Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.53004 * 109.46795 * 120.00065 * 2 1 3 5 5 H 1.08998 * 109.50027 * 299.91925 * 4 2 1 6 6 C 1.53119 * 109.49618 * 179.80480 * 4 2 1 7 7 C 1.53122 * 109.15760 * 182.40425 * 6 4 2 8 8 C 1.53037 * 109.28012 * 57.65312 * 7 6 4 9 9 N 1.46848 * 109.52220 * 300.82217 * 8 7 6 10 10 C 1.46903 * 110.99947 * 185.83812 * 9 8 7 11 11 H 1.09007 * 109.47052 * 290.78672 * 10 9 8 12 12 C 1.53000 * 109.47096 * 170.79222 * 10 9 8 13 13 C 1.50694 * 109.47066 * 50.78987 * 10 9 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.46851 * 111.19859 * 61.74381 * 9 8 7 22 22 H 1.08999 * 109.47579 * 300.00115 * 1 2 3 23 23 H 1.08997 * 109.47503 * 60.00284 * 1 2 3 24 24 H 1.09009 * 109.47180 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46919 * 240.00119 * 2 1 3 26 26 H 1.09003 * 109.47036 * 60.00044 * 3 2 1 27 27 H 1.08992 * 109.47123 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46720 * 300.00195 * 3 2 1 29 29 H 1.08999 * 109.52385 * 302.30276 * 6 4 2 30 30 H 1.08992 * 109.52832 * 62.43734 * 6 4 2 31 31 H 1.08997 * 109.50173 * 177.59414 * 7 6 4 32 32 H 1.09001 * 109.50482 * 297.67379 * 7 6 4 33 33 H 1.08995 * 109.46694 * 180.80412 * 8 7 6 34 34 H 1.09004 * 109.46173 * 60.83295 * 8 7 6 35 35 H 1.08995 * 109.47131 * 180.02562 * 12 10 9 36 36 H 1.09002 * 109.47106 * 299.99893 * 12 10 9 37 37 H 1.08998 * 109.47089 * 59.99840 * 12 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.46468 * 58.26844 * 21 9 8 40 40 H 1.09001 * 109.46119 * 178.25318 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6780 -0.2070 2.1396 6 6 3.5711 -0.7259 1.2475 7 6 4.0727 -1.5012 2.4690 8 6 3.5041 -2.9216 2.4344 9 7 2.0368 -2.8630 2.4381 10 6 1.4565 -4.2083 2.5449 11 1 1.6426 -4.7587 1.6226 12 6 -0.0518 -4.0963 2.7763 13 6 2.0893 -4.9379 3.7017 14 1 2.8471 -4.4512 4.2977 15 6 1.7016 -6.2274 3.9987 16 7 0.7791 -6.8203 3.2726 17 14 2.4866 -7.1320 5.4321 18 1 1.8999 -8.4919 5.5402 19 1 3.9504 -7.2403 5.2072 20 1 2.2330 -6.3827 6.6889 21 6 1.5302 -2.1643 1.2499 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 3.9329 -1.2055 0.3380 30 1 3.9386 0.2993 1.2896 31 1 5.1617 -1.5446 2.4504 32 1 3.7440 -0.9991 3.3789 33 1 3.8478 -3.4719 3.3102 34 1 3.8450 -3.4274 1.5310 35 1 -0.4823 -5.0944 2.8560 36 1 -0.2380 -3.5459 3.6986 37 1 -0.5094 -3.5685 1.9396 38 1 0.5067 -7.7276 3.4813 39 1 1.8805 -2.6736 0.3522 40 1 0.4403 -2.1643 1.2657 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694405419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = -22.216073 kcal Electronic energy + Delta-G solvation = -16653.041123 eV Core-core repulsion = 14273.653128 eV Total energy + Delta-G solvation = -2379.387995 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.90786 -35.76970 -33.47335 -31.74856 -29.26612 -28.45187 -27.04129 -25.24258 -23.20641 -22.58401 -20.22150 -19.36079 -19.09943 -16.20715 -15.69894 -14.61559 -14.39279 -13.85470 -13.79506 -13.52909 -13.14910 -12.90061 -12.58810 -12.25517 -12.17107 -11.76814 -11.60894 -11.15414 -10.91356 -10.89462 -10.80441 -10.59053 -10.45277 -10.26640 -10.20718 -9.98143 -9.91115 -9.67431 -9.27390 -8.71612 -8.38343 -7.05478 -5.98168 -4.02696 3.33646 3.37882 3.40773 4.42814 4.82944 5.01450 5.10877 5.22844 5.33801 5.46390 5.57531 5.59680 5.73922 5.82816 5.90306 5.95851 6.00167 6.12517 6.18123 6.23952 6.33064 6.36615 6.39061 6.44103 6.46080 6.64265 6.74056 6.88705 6.88894 6.97416 7.12950 7.26367 7.60155 7.82373 7.86799 8.28069 8.40021 8.69746 9.04383 9.62238 11.08668 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042553 B = 0.007122 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.845328 B = 3930.354945 C = 4437.828699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.078 4.078 5 H 0.073 0.927 6 C -0.113 4.113 7 C -0.118 4.118 8 C 0.063 3.937 9 N -0.534 5.534 10 C 0.212 3.788 11 H -0.004 1.004 12 C -0.129 4.129 13 C -0.506 4.506 14 H 0.064 0.936 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.288 1.288 19 H -0.278 1.278 20 H -0.277 1.277 21 C 0.058 3.942 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.015 0.985 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.006 0.994 38 H 0.260 0.740 39 H 0.016 0.984 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 12.012 -5.293 13.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.097 4.097 5 H 0.092 0.908 6 C -0.150 4.150 7 C -0.156 4.156 8 C -0.066 4.066 9 N -0.259 5.259 10 C 0.106 3.894 11 H 0.013 0.987 12 C -0.188 4.188 13 C -0.544 4.544 14 H 0.082 0.918 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.214 1.214 19 H -0.204 1.204 20 H -0.202 1.202 21 C -0.070 4.070 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.034 0.966 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.119 12.078 -4.887 13.201 hybrid contribution 0.598 -1.066 -0.005 1.223 sum 2.717 11.012 -4.892 12.352 Atomic orbital electron populations 1.21880 0.95448 1.02105 1.01105 1.21126 0.95687 0.95778 0.98464 1.21866 1.00994 0.96240 1.01177 1.21227 0.94971 0.96227 0.97243 0.90809 1.21647 0.95651 0.99378 0.98346 1.21641 0.98681 0.97088 0.98172 1.21970 0.89130 0.94557 1.00904 1.62010 1.05563 1.21624 1.36664 1.19198 0.91963 0.82395 0.95795 0.98663 1.21797 0.97685 1.02038 0.97241 1.21186 1.21606 0.97813 1.13837 0.91817 1.24940 0.95179 0.97463 0.96635 1.69891 1.30363 1.13511 1.39497 0.86599 0.79422 0.78703 0.82906 1.21371 1.20369 1.20224 1.22130 0.99986 0.92924 0.91960 0.92725 0.93377 0.92165 0.91732 0.92844 0.92616 0.93313 0.92925 0.92587 0.92759 0.91724 0.89554 0.96635 0.89819 0.94766 0.97464 0.92980 0.96612 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.84 37.16 0.33 -1.50 16 2 C -0.09 -1.17 2.51 -90.62 -0.23 -1.40 16 3 C -0.15 -1.58 8.85 37.16 0.33 -1.25 16 4 C -0.08 -1.19 1.94 -90.54 -0.18 -1.37 16 5 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 6 C -0.11 -1.64 4.86 -26.61 -0.13 -1.77 16 7 C -0.12 -1.92 6.09 -26.65 -0.16 -2.08 16 8 C 0.06 1.28 5.15 -3.83 -0.02 1.26 16 9 N -0.53 -11.79 4.52 -228.08 -1.03 -12.82 16 10 C 0.21 5.50 2.07 -68.87 -0.14 5.35 16 11 H 0.00 -0.12 8.13 -51.92 -0.42 -0.54 16 12 C -0.13 -3.24 8.88 37.16 0.33 -2.91 16 13 C -0.51 -13.99 7.87 -34.44 -0.27 -14.27 16 14 H 0.06 1.74 6.04 -52.49 -0.32 1.43 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -25.77 11.32 55.43 0.63 -25.14 16 17 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.06 1.10 4.19 -3.83 -0.02 1.09 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.81 6.45 -51.92 -0.34 0.47 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.58 6.49 -51.93 -0.34 0.25 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.90 5.74 -51.93 -0.30 1.61 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.01 0.15 6.40 -51.93 -0.33 -0.19 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 1.39 4.52 -51.93 -0.23 1.16 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -28.17 295.68 -8.36 -36.53 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.14 Total: -2.17 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.25 Total: -17.30 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.40 Total: -37.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.17 -8.36 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694405419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.314 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds