Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.53004 * 109.46795 * 120.00065 * 2 1 3 5 5 H 1.08998 * 109.50027 * 299.91925 * 4 2 1 6 6 C 1.53119 * 109.49618 * 179.80480 * 4 2 1 7 7 C 1.53122 * 109.15760 * 182.40425 * 6 4 2 8 8 C 1.53037 * 109.28012 * 57.65312 * 7 6 4 9 9 N 1.46848 * 109.52220 * 300.82217 * 8 7 6 10 10 C 1.46903 * 110.99947 * 185.83812 * 9 8 7 11 11 H 1.09007 * 109.47052 * 290.78672 * 10 9 8 12 12 C 1.53000 * 109.47096 * 170.79222 * 10 9 8 13 13 C 1.50694 * 109.47066 * 50.78987 * 10 9 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.46851 * 111.19859 * 61.74381 * 9 8 7 22 22 H 1.08999 * 109.47579 * 300.00115 * 1 2 3 23 23 H 1.08997 * 109.47503 * 60.00284 * 1 2 3 24 24 H 1.09009 * 109.47180 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46919 * 240.00119 * 2 1 3 26 26 H 1.09003 * 109.47036 * 60.00044 * 3 2 1 27 27 H 1.08992 * 109.47123 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46720 * 300.00195 * 3 2 1 29 29 H 1.08999 * 109.52385 * 302.30276 * 6 4 2 30 30 H 1.08992 * 109.52832 * 62.43734 * 6 4 2 31 31 H 1.08997 * 109.50173 * 177.59414 * 7 6 4 32 32 H 1.09001 * 109.50482 * 297.67379 * 7 6 4 33 33 H 1.08995 * 109.46694 * 180.80412 * 8 7 6 34 34 H 1.09004 * 109.46173 * 60.83295 * 8 7 6 35 35 H 1.08995 * 109.47131 * 180.02562 * 12 10 9 36 36 H 1.09002 * 109.47106 * 299.99893 * 12 10 9 37 37 H 1.08998 * 109.47089 * 59.99840 * 12 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.46468 * 58.26844 * 21 9 8 40 40 H 1.09001 * 109.46119 * 178.25318 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6780 -0.2070 2.1396 6 6 3.5711 -0.7259 1.2475 7 6 4.0727 -1.5012 2.4690 8 6 3.5041 -2.9216 2.4344 9 7 2.0368 -2.8630 2.4381 10 6 1.4565 -4.2083 2.5449 11 1 1.6426 -4.7587 1.6226 12 6 -0.0518 -4.0963 2.7763 13 6 2.0893 -4.9379 3.7017 14 1 2.8471 -4.4512 4.2977 15 6 1.7016 -6.2274 3.9987 16 7 0.7791 -6.8203 3.2726 17 14 2.4866 -7.1320 5.4321 18 1 1.8999 -8.4919 5.5402 19 1 3.9504 -7.2403 5.2072 20 1 2.2330 -6.3827 6.6889 21 6 1.5302 -2.1643 1.2499 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 3.9329 -1.2055 0.3380 30 1 3.9386 0.2993 1.2896 31 1 5.1617 -1.5446 2.4504 32 1 3.7440 -0.9991 3.3789 33 1 3.8478 -3.4719 3.3102 34 1 3.8450 -3.4274 1.5310 35 1 -0.4823 -5.0944 2.8560 36 1 -0.2380 -3.5459 3.6986 37 1 -0.5094 -3.5685 1.9396 38 1 0.5067 -7.7276 3.4813 39 1 1.8805 -2.6736 0.3522 40 1 0.4403 -2.1643 1.2657 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694405419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = -38.255801 kcal Electronic energy + Delta-G solvation = -16653.736658 eV Core-core repulsion = 14273.653128 eV Total energy + Delta-G solvation = -2380.083530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.36284 -37.26958 -35.15746 -33.53120 -30.69668 -30.21401 -28.06701 -27.28666 -24.74971 -24.01282 -21.83977 -20.82526 -20.49239 -18.30754 -17.37284 -16.22366 -15.91740 -15.36970 -15.15511 -14.82941 -14.64586 -14.44427 -14.18325 -13.75968 -13.42781 -13.20039 -12.89313 -12.82544 -12.67179 -12.41836 -12.32348 -12.17519 -12.12353 -11.85374 -11.65489 -11.61642 -11.36661 -11.17345 -10.71309 -10.66698 -10.48034 -8.89820 -8.12180 -6.24500 1.41396 1.43671 1.51146 2.41555 3.15267 3.34196 3.84259 3.97226 4.01828 4.25076 4.32542 4.42797 4.55861 4.62044 4.71200 4.75255 4.79487 4.86296 4.92381 5.00994 5.03705 5.04234 5.09009 5.11570 5.19569 5.24936 5.26883 5.31351 5.37970 5.44315 5.53555 5.58707 5.66704 5.73791 5.82180 6.24450 6.43719 6.80511 6.91951 7.44885 8.94060 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042553 B = 0.007122 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.845328 B = 3930.354945 C = 4437.828699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.071 4.071 5 H 0.069 0.931 6 C -0.109 4.109 7 C -0.110 4.110 8 C 0.061 3.939 9 N -0.539 5.539 10 C 0.215 3.785 11 H -0.045 1.045 12 C -0.117 4.117 13 C -0.523 4.523 14 H 0.062 0.938 15 C 0.010 3.990 16 N -0.922 5.922 17 Si 0.962 3.038 18 H -0.284 1.284 19 H -0.271 1.271 20 H -0.270 1.270 21 C 0.059 3.941 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.001 0.999 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.003 0.997 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 13.934 -5.191 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.198 4.198 4 C -0.089 4.089 5 H 0.088 0.912 6 C -0.146 4.146 7 C -0.148 4.148 8 C -0.067 4.067 9 N -0.263 5.263 10 C 0.108 3.892 11 H -0.028 1.028 12 C -0.175 4.175 13 C -0.561 4.561 14 H 0.080 0.920 15 C -0.189 4.189 16 N -0.561 5.561 17 Si 0.787 3.213 18 H -0.209 1.209 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.069 4.069 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.020 0.980 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.021 0.979 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.052 14.022 -4.792 15.129 hybrid contribution 0.291 -1.671 -0.084 1.698 sum 3.343 12.351 -4.876 13.693 Atomic orbital electron populations 1.21878 0.95294 1.01226 1.02139 1.21096 0.95847 0.96983 0.96767 1.21825 1.01412 0.94432 1.02109 1.21185 0.95720 0.93465 0.98570 0.91225 1.21649 0.94786 1.00827 0.97333 1.21592 0.99922 0.94079 0.99161 1.22001 0.88200 0.97364 0.99115 1.62005 1.06623 1.19266 1.38416 1.19023 0.92629 0.84059 0.93467 1.02773 1.21602 0.97308 1.00736 0.97835 1.21471 1.21831 0.98495 1.14339 0.91966 1.25764 0.95631 0.98263 0.99216 1.70028 1.31404 1.13771 1.40944 0.85554 0.78687 0.77421 0.79636 1.20899 1.19631 1.19552 1.22218 0.99677 0.94972 0.90036 0.92565 0.91500 0.93999 0.91930 0.92529 0.91894 0.91837 0.92910 0.89460 0.90416 0.91699 0.91788 0.98033 0.92215 0.95014 0.95506 0.92926 0.97895 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.84 71.98 0.64 -2.76 16 2 C -0.09 -2.04 2.51 -10.79 -0.03 -2.07 16 3 C -0.14 -2.53 8.85 71.98 0.64 -1.89 16 4 C -0.07 -2.04 1.94 -10.74 -0.02 -2.06 16 5 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 6 C -0.11 -2.87 4.86 30.67 0.15 -2.72 16 7 C -0.11 -3.37 6.09 30.65 0.19 -3.18 16 8 C 0.06 2.53 5.15 86.33 0.44 2.97 16 9 N -0.54 -24.20 4.52 -875.50 -3.95 -28.15 16 10 C 0.22 11.54 2.07 44.17 0.09 11.63 16 11 H -0.05 -2.73 8.13 -2.38 -0.02 -2.75 16 12 C -0.12 -6.00 8.88 71.98 0.64 -5.36 16 13 C -0.52 -29.65 7.87 25.60 0.20 -29.45 16 14 H 0.06 3.47 6.04 -2.91 -0.02 3.46 16 15 C 0.01 0.55 5.30 84.66 0.45 1.00 16 16 N -0.92 -54.44 11.32 21.45 0.24 -54.20 16 17 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 C 0.06 2.24 4.19 86.32 0.36 2.60 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.04 1.10 6.45 -2.38 -0.02 1.08 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.05 6.49 -2.39 -0.02 1.03 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.84 6.57 -2.39 -0.02 1.82 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.88 5.74 -2.39 -0.01 2.87 16 34 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 36 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.03 1.22 6.40 -2.39 -0.02 1.20 16 38 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 40 H 0.07 2.57 4.52 -2.39 -0.01 2.56 16 Total: -1.00 -61.60 295.68 3.04 -58.56 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.98 Total: 8.67 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.75 Total: -31.29 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.71 Total: -82.35 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.60 3.04 -58.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694405419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.305 kcal (2) G-P(sol) polarization free energy of solvation -61.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds