Wall clock time and date at job start Mon Mar 30 2020 02:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46745 * 2 1 4 4 C 1.52996 * 109.47239 * 239.99936 * 2 1 3 5 5 C 1.50694 * 109.47245 * 175.00063 * 4 2 1 6 6 H 1.08002 * 120.00192 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00107 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00062 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 119.99819 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47389 * 90.00172 * 9 7 5 11 11 H 1.48499 * 109.46998 * 209.99988 * 9 7 5 12 12 H 1.48504 * 109.47454 * 330.00017 * 9 7 5 13 13 N 1.46901 * 109.47121 * 119.99420 * 2 1 3 14 14 C 1.46900 * 111.00304 * 275.00198 * 13 2 1 15 15 H 1.09006 * 110.43411 * 323.91411 * 14 13 2 16 16 C 1.54887 * 110.48553 * 86.45238 * 14 13 2 17 17 C 1.54890 * 102.91108 * 156.66086 * 16 14 13 18 18 C 1.54463 * 104.10368 * 322.30112 * 17 16 14 19 19 C 1.52997 * 109.86085 * 264.10318 * 18 17 16 20 20 C 1.53000 * 110.16183 * 142.74946 * 18 17 16 21 21 C 1.53877 * 106.68421 * 23.34437 * 18 17 16 22 22 H 1.08995 * 109.47104 * 300.00122 * 1 2 3 23 23 H 1.08992 * 109.46897 * 60.00148 * 1 2 3 24 24 H 1.08994 * 109.46758 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46972 * 295.00109 * 4 2 1 26 26 H 1.09003 * 109.47057 * 54.99400 * 4 2 1 27 27 H 0.96998 * 119.99498 * 179.97438 * 8 7 5 28 28 H 1.00902 * 110.99748 * 151.04629 * 13 2 1 29 29 H 1.09002 * 110.75856 * 275.06996 * 16 14 13 30 30 H 1.09006 * 110.75640 * 38.25982 * 16 14 13 31 31 H 1.09003 * 110.48855 * 80.83451 * 17 16 14 32 32 H 1.09003 * 110.48748 * 203.47148 * 17 16 14 33 33 H 1.08997 * 109.47535 * 177.16748 * 19 18 17 34 34 H 1.08999 * 109.47015 * 297.16864 * 19 18 17 35 35 H 1.09005 * 109.47102 * 57.16591 * 19 18 17 36 36 H 1.09001 * 109.47282 * 302.64857 * 20 18 17 37 37 H 1.08999 * 109.47360 * 62.65247 * 20 18 17 38 38 H 1.09000 * 109.46796 * 182.65255 * 20 18 17 39 39 H 1.08995 * 110.02951 * 240.87549 * 21 18 17 40 40 H 1.08998 * 110.07557 * 119.46051 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2304 -1.1927 -2.3583 8 7 5.5411 -1.0994 -2.4139 9 14 3.3015 -2.1078 -3.6958 10 1 2.9398 -1.1626 -4.7826 11 1 4.1604 -3.1878 -4.2446 12 1 2.0659 -2.7004 -3.1236 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2228 2.3469 15 1 2.3827 1.2193 2.0229 16 6 0.7150 0.2775 3.0721 17 6 1.0985 0.7402 4.4996 18 6 2.4335 0.0170 4.7837 19 6 2.1705 -1.2718 5.5651 20 6 3.3689 0.9299 5.5790 21 6 3.0566 -0.3135 3.4162 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0276 0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 6.0254 -1.5062 -3.1494 28 1 2.9174 -1.1204 1.0288 29 1 0.0539 1.0015 2.5958 30 1 0.2513 -0.7087 3.0972 31 1 1.2386 1.8208 4.5257 32 1 0.3362 0.4360 5.2169 33 1 3.1104 -1.8021 5.7184 34 1 1.7295 -1.0273 6.5314 35 1 1.4841 -1.9044 5.0021 36 1 3.5306 1.8552 5.0259 37 1 2.9191 1.1581 6.5453 38 1 4.3236 0.4269 5.7324 39 1 3.1716 -1.3921 3.3092 40 1 4.0253 0.1766 3.3181 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695775911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:16 Heat of formation + Delta-G solvation = -34.424897 kcal Electronic energy + Delta-G solvation = -16267.526716 eV Core-core repulsion = 13887.609307 eV Total energy + Delta-G solvation = -2379.917409 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.08862 -36.13430 -32.81010 -31.56442 -29.72425 -27.92417 -27.26644 -26.87974 -23.87803 -22.41684 -19.87531 -19.48472 -18.52619 -16.78329 -15.49495 -15.11202 -14.49639 -14.21807 -13.93305 -13.61323 -13.34536 -13.00620 -12.65417 -12.10950 -12.03381 -11.82909 -11.76279 -11.52626 -11.41346 -11.10160 -10.85569 -10.61380 -10.53168 -10.39136 -10.26727 -10.22053 -10.07068 -9.70505 -9.34846 -9.17563 -8.55018 -7.65445 -6.06096 -4.04234 3.31320 3.39021 3.44271 4.45278 4.67089 4.75764 4.83667 5.08340 5.32488 5.41377 5.49273 5.54904 5.63870 5.72958 5.76355 5.85912 5.86969 5.93611 6.03061 6.05744 6.13232 6.14661 6.18401 6.26195 6.33400 6.40696 6.49204 6.56990 6.59910 6.64296 6.78474 6.86736 7.20681 7.35866 7.77672 8.01924 8.30881 8.50035 8.96175 9.56918 11.06944 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036133 B = 0.006462 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.737075 B = 4331.706154 C = 4782.768271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.097 3.903 3 H 0.033 0.967 4 C -0.018 4.018 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.677 5.677 14 C 0.084 3.916 15 H 0.041 0.959 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.067 4.067 19 C -0.136 4.136 20 C -0.139 4.139 21 C -0.117 4.117 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.025 0.975 26 H 0.015 0.985 27 H 0.263 0.737 28 H 0.357 0.643 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 2.315 13.474 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.013 4.013 3 H 0.051 0.949 4 C -0.055 4.055 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.311 5.311 14 C -0.026 4.026 15 H 0.059 0.941 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.067 4.067 19 C -0.193 4.193 20 C -0.196 4.196 21 C -0.155 4.155 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.179 0.821 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.556 2.001 13.521 16.125 hybrid contribution 0.519 0.112 -1.076 1.200 sum -8.036 2.114 12.444 14.963 Atomic orbital electron populations 1.21948 0.96801 1.01299 0.99941 1.21418 0.93222 0.95843 0.90803 0.94899 1.19775 0.96915 0.96247 0.92589 1.21092 0.89947 1.35144 1.09836 0.91306 1.25015 0.94692 0.95708 0.97896 1.69922 1.06602 1.45313 1.32290 0.86756 0.80304 0.79885 0.82204 1.20432 1.21476 1.18863 1.60657 1.34727 1.31699 1.04042 1.22343 0.94392 0.94581 0.91299 0.94127 1.22606 0.97178 1.01276 0.93853 1.22516 0.96090 0.99438 0.97341 1.21131 0.95179 0.95291 0.95140 1.21889 1.01408 0.96826 0.99185 1.21920 0.98978 0.99267 0.99422 1.22429 0.98144 1.01910 0.93028 0.93498 0.93637 0.92818 0.95690 0.96655 0.92765 0.82064 0.92277 0.90852 0.92063 0.92037 0.92917 0.93267 0.92326 0.92714 0.93118 0.92829 0.90761 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.21 37.16 0.34 -2.11 16 2 C 0.10 1.97 2.59 -67.71 -0.18 1.80 16 3 H 0.03 0.71 7.47 -51.93 -0.39 0.32 16 4 C -0.02 -0.42 3.64 -27.89 -0.10 -0.52 16 5 C -0.52 -14.60 8.67 -34.44 -0.30 -14.89 16 6 H 0.07 2.06 7.73 -52.49 -0.41 1.66 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.68 -12.96 6.15 -98.00 -0.60 -13.57 16 14 C 0.08 1.37 3.17 -66.06 -0.21 1.16 16 15 H 0.04 0.72 7.51 -51.93 -0.39 0.33 16 16 C -0.11 -1.54 5.41 -24.74 -0.13 -1.68 16 17 C -0.12 -1.37 5.92 -24.97 -0.15 -1.52 16 18 C -0.07 -0.80 0.94 -153.29 -0.14 -0.95 16 19 C -0.14 -1.50 8.13 37.16 0.30 -1.20 16 20 C -0.14 -1.50 8.17 37.16 0.30 -1.20 16 21 C -0.12 -1.71 5.60 -25.61 -0.14 -1.86 16 22 H 0.05 0.73 5.48 -51.93 -0.28 0.44 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 26 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.36 7.62 6.91 -39.29 -0.27 7.35 16 29 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 32 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.14 7.52 -51.93 -0.39 0.75 16 40 H 0.06 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 304.14 15.07 4.58 4.58 Total: -1.00 -28.87 304.14 -7.84 -36.71 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.42 Total: 3.03 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -0.50 Total: -21.09 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.17 Total: -40.42 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.87 -7.84 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695775911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.288 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds