Wall clock time and date at job start Mon Mar 30 2020 02:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46745 * 2 1 4 4 C 1.52996 * 109.47239 * 239.99936 * 2 1 3 5 5 C 1.50694 * 109.47245 * 175.00063 * 4 2 1 6 6 H 1.08002 * 120.00192 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00107 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00062 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 119.99819 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47389 * 90.00172 * 9 7 5 11 11 H 1.48499 * 109.46998 * 209.99988 * 9 7 5 12 12 H 1.48504 * 109.47454 * 330.00017 * 9 7 5 13 13 N 1.46901 * 109.47121 * 119.99420 * 2 1 3 14 14 C 1.46900 * 111.00304 * 275.00198 * 13 2 1 15 15 H 1.09006 * 110.43411 * 323.91411 * 14 13 2 16 16 C 1.54887 * 110.48553 * 86.45238 * 14 13 2 17 17 C 1.54890 * 102.91108 * 156.66086 * 16 14 13 18 18 C 1.54463 * 104.10368 * 322.30112 * 17 16 14 19 19 C 1.52997 * 109.86085 * 264.10318 * 18 17 16 20 20 C 1.53000 * 110.16183 * 142.74946 * 18 17 16 21 21 C 1.53877 * 106.68421 * 23.34437 * 18 17 16 22 22 H 1.08995 * 109.47104 * 300.00122 * 1 2 3 23 23 H 1.08992 * 109.46897 * 60.00148 * 1 2 3 24 24 H 1.08994 * 109.46758 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46972 * 295.00109 * 4 2 1 26 26 H 1.09003 * 109.47057 * 54.99400 * 4 2 1 27 27 H 0.96998 * 119.99498 * 179.97438 * 8 7 5 28 28 H 1.00902 * 110.99748 * 151.04629 * 13 2 1 29 29 H 1.09002 * 110.75856 * 275.06996 * 16 14 13 30 30 H 1.09006 * 110.75640 * 38.25982 * 16 14 13 31 31 H 1.09003 * 110.48855 * 80.83451 * 17 16 14 32 32 H 1.09003 * 110.48748 * 203.47148 * 17 16 14 33 33 H 1.08997 * 109.47535 * 177.16748 * 19 18 17 34 34 H 1.08999 * 109.47015 * 297.16864 * 19 18 17 35 35 H 1.09005 * 109.47102 * 57.16591 * 19 18 17 36 36 H 1.09001 * 109.47282 * 302.64857 * 20 18 17 37 37 H 1.08999 * 109.47360 * 62.65247 * 20 18 17 38 38 H 1.09000 * 109.46796 * 182.65255 * 20 18 17 39 39 H 1.08995 * 110.02951 * 240.87549 * 21 18 17 40 40 H 1.08998 * 110.07557 * 119.46051 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2304 -1.1927 -2.3583 8 7 5.5411 -1.0994 -2.4139 9 14 3.3015 -2.1078 -3.6958 10 1 2.9398 -1.1626 -4.7826 11 1 4.1604 -3.1878 -4.2446 12 1 2.0659 -2.7004 -3.1236 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2228 2.3469 15 1 2.3827 1.2193 2.0229 16 6 0.7150 0.2775 3.0721 17 6 1.0985 0.7402 4.4996 18 6 2.4335 0.0170 4.7837 19 6 2.1705 -1.2718 5.5651 20 6 3.3689 0.9299 5.5790 21 6 3.0566 -0.3135 3.4162 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0276 0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 6.0254 -1.5062 -3.1494 28 1 2.9174 -1.1204 1.0288 29 1 0.0539 1.0015 2.5958 30 1 0.2513 -0.7087 3.0972 31 1 1.2386 1.8208 4.5257 32 1 0.3362 0.4360 5.2169 33 1 3.1104 -1.8021 5.7184 34 1 1.7295 -1.0273 6.5314 35 1 1.4841 -1.9044 5.0021 36 1 3.5306 1.8552 5.0259 37 1 2.9191 1.1581 6.5453 38 1 4.3236 0.4269 5.7324 39 1 3.1716 -1.3921 3.3092 40 1 4.0253 0.1766 3.3181 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695775911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:16 Heat of formation + Delta-G solvation = -51.619762 kcal Electronic energy + Delta-G solvation = -16268.272341 eV Core-core repulsion = 13887.609307 eV Total energy + Delta-G solvation = -2380.663034 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25769 -37.66002 -34.78802 -33.08017 -30.95455 -29.79637 -28.22849 -28.06218 -25.19675 -24.16368 -21.19354 -21.11143 -19.58503 -18.96123 -16.79501 -16.61315 -16.05316 -16.01457 -15.10007 -14.70972 -14.58153 -14.40675 -14.13030 -13.68707 -13.49438 -13.45043 -12.97188 -12.93453 -12.53581 -12.49512 -12.32437 -12.13326 -11.81962 -11.75956 -11.55847 -11.42706 -11.38077 -11.30291 -11.14569 -10.97238 -10.77293 -9.21774 -8.29856 -6.33148 1.35237 1.37569 1.49862 2.35955 3.03890 3.40954 3.63425 3.77527 3.98202 4.24951 4.36911 4.45591 4.50238 4.53094 4.56302 4.65986 4.71062 4.85624 4.87063 4.93191 4.98357 5.03122 5.07679 5.10040 5.14901 5.16461 5.20800 5.32413 5.36984 5.42464 5.42944 5.49076 5.56124 5.63347 5.68242 6.23096 6.45860 6.61547 6.73429 7.31311 8.86387 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036133 B = 0.006462 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.737075 B = 4331.706154 C = 4782.768271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.098 3.902 3 H 0.015 0.985 4 C -0.013 4.013 5 C -0.524 4.524 6 H 0.031 0.969 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.249 1.249 13 N -0.676 5.676 14 C 0.078 3.922 15 H 0.023 0.977 16 C -0.103 4.103 17 C -0.109 4.109 18 C -0.064 4.064 19 C -0.133 4.133 20 C -0.137 4.137 21 C -0.116 4.116 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.024 0.976 26 H 0.021 0.979 27 H 0.265 0.735 28 H 0.339 0.661 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 2.093 14.301 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.012 4.012 3 H 0.033 0.967 4 C -0.051 4.051 5 C -0.562 4.562 6 H 0.049 0.951 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.172 1.172 13 N -0.308 5.308 14 C -0.032 4.032 15 H 0.041 0.959 16 C -0.141 4.141 17 C -0.147 4.147 18 C -0.065 4.065 19 C -0.190 4.190 20 C -0.194 4.194 21 C -0.154 4.154 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.890 1.795 14.367 18.117 hybrid contribution 1.321 0.233 -1.284 1.857 sum -9.569 2.028 13.083 16.335 Atomic orbital electron populations 1.21853 0.93694 1.01953 1.01528 1.21377 0.95587 0.94288 0.89898 0.96727 1.19722 0.94077 0.96617 0.94653 1.21340 0.92146 1.34087 1.08639 0.95104 1.25957 0.95518 0.96844 1.00656 1.70069 1.08499 1.46921 1.33512 0.85656 0.79306 0.78624 0.79003 1.19367 1.21125 1.17214 1.60804 1.33397 1.32186 1.04396 1.22481 0.96839 0.93060 0.90826 0.95948 1.22529 0.95325 1.01373 0.94905 1.22503 0.96227 0.99748 0.96197 1.21129 0.95449 0.96301 0.93604 1.21863 1.01386 0.95969 0.99810 1.21899 0.98825 0.98625 1.00047 1.22428 0.97512 1.00921 0.94576 0.91583 0.92479 0.92548 0.95780 0.96092 0.92594 0.84186 0.91799 0.91118 0.91448 0.89931 0.93045 0.91253 0.93016 0.93293 0.91142 0.92948 0.91822 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.21 71.98 0.66 -3.64 16 2 C 0.10 4.00 2.59 44.92 0.12 4.12 16 3 H 0.01 0.65 7.47 -2.39 -0.02 0.63 16 4 C -0.01 -0.62 3.64 29.84 0.11 -0.51 16 5 C -0.52 -30.11 8.67 25.60 0.22 -29.89 16 6 H 0.03 1.95 7.73 -2.91 -0.02 1.93 16 7 C 0.01 0.42 5.47 84.66 0.46 0.89 16 8 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 9 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 13 N -0.68 -26.26 6.15 -463.97 -2.85 -29.12 16 14 C 0.08 2.56 3.17 45.99 0.15 2.70 16 15 H 0.02 0.82 7.51 -2.38 -0.02 0.80 16 16 C -0.10 -2.69 5.41 31.88 0.17 -2.52 16 17 C -0.11 -2.29 5.92 31.74 0.19 -2.11 16 18 C -0.06 -1.45 0.94 -51.39 -0.05 -1.50 16 19 C -0.13 -2.65 8.13 71.98 0.59 -2.07 16 20 C -0.14 -2.72 8.17 71.98 0.59 -2.14 16 21 C -0.12 -3.45 5.60 31.32 0.18 -3.27 16 22 H 0.07 1.88 5.48 -2.39 -0.01 1.87 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 26 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.34 15.12 6.91 -89.69 -0.62 14.50 16 29 H 0.06 1.60 6.56 -2.39 -0.02 1.59 16 30 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.07 1.36 7.84 -2.39 -0.02 1.34 16 32 H 0.08 1.45 7.84 -2.39 -0.02 1.43 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 2.00 7.52 -2.39 -0.02 1.98 16 40 H 0.05 1.54 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -62.91 304.14 3.01 -59.90 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.30 Total: 21.78 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 3.38 Total: -39.93 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.55 Total: -88.53 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -62.91 3.01 -59.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695775911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.276 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds