Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47323 * 119.99461 * 2 1 3 5 5 C 1.50706 * 109.46931 * 184.99880 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 12 12 H 1.48498 * 109.47295 * 60.00420 * 9 7 5 13 13 N 1.46904 * 109.47246 * 240.00103 * 2 1 3 14 14 C 1.46894 * 110.99974 * 84.99886 * 13 2 1 15 15 H 1.08994 * 110.44111 * 36.08927 * 14 13 2 16 16 C 1.54893 * 110.48471 * 273.54395 * 14 13 2 17 17 C 1.54893 * 102.74961 * 203.38412 * 16 14 13 18 18 C 1.54262 * 104.19542 * 37.94037 * 17 16 14 19 19 C 1.53007 * 110.03237 * 95.67578 * 18 17 16 20 20 C 1.53000 * 110.03101 * 217.05688 * 18 17 16 21 21 C 1.53879 * 106.60099 * 336.39325 * 18 17 16 22 22 H 1.09001 * 109.47351 * 60.00508 * 1 2 3 23 23 H 1.09002 * 109.46700 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47237 * 299.99869 * 1 2 3 25 25 H 1.09000 * 109.46986 * 65.00438 * 4 2 1 26 26 H 1.08992 * 109.46974 * 305.00502 * 4 2 1 27 27 H 0.97000 * 119.99706 * 359.97438 * 8 7 5 28 28 H 1.00901 * 110.99902 * 208.95386 * 13 2 1 29 29 H 1.08997 * 110.75543 * 321.69461 * 16 14 13 30 30 H 1.08997 * 110.75278 * 84.88101 * 16 14 13 31 31 H 1.08999 * 110.48351 * 156.62051 * 17 16 14 32 32 H 1.08997 * 110.48111 * 279.13204 * 17 16 14 33 33 H 1.09002 * 109.46894 * 61.45156 * 19 18 17 34 34 H 1.08998 * 109.47179 * 181.44789 * 19 18 17 35 35 H 1.09000 * 109.47042 * 301.45643 * 19 18 17 36 36 H 1.08994 * 109.46988 * 58.55439 * 20 18 17 37 37 H 1.09004 * 109.46907 * 178.54657 * 20 18 17 38 38 H 1.08991 * 109.47415 * 298.54374 * 20 18 17 39 39 H 1.09004 * 110.02993 * 240.71549 * 21 18 17 40 40 H 1.09000 * 110.02836 * 119.28367 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1933 2.3578 8 7 3.5766 -1.8384 3.2991 9 14 6.0921 -1.0608 2.4367 10 1 6.5872 -1.7619 3.6486 11 1 6.6846 -1.6860 1.2270 12 1 6.4844 0.3701 2.4972 13 7 2.0197 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 1 2.3826 1.2191 -2.0230 16 6 0.7149 0.2772 -3.0721 17 6 1.1027 0.7389 -4.4988 18 6 2.4329 0.0113 -4.7833 19 6 2.1684 -1.2790 -5.5619 20 6 3.3682 0.9221 -5.5812 21 6 3.0558 -0.3170 -3.4151 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.7517 -1.7714 1.2057 26 1 1.6053 -0.2616 2.1369 27 1 2.6099 -1.9068 3.2582 28 1 2.9173 -1.1205 -1.0287 29 1 0.2517 -0.7091 -3.0979 30 1 0.0535 1.0006 -2.5953 31 1 0.3412 0.4367 -5.2177 32 1 1.2434 1.8194 -4.5250 33 1 1.7051 -1.0376 -6.5186 34 1 3.1109 -1.7983 -5.7355 35 1 1.5008 -1.9203 -4.9865 36 1 3.5497 1.8382 -5.0193 37 1 4.3141 0.4089 -5.7548 38 1 2.9073 1.1677 -6.5379 39 1 4.0248 0.1728 -3.3188 40 1 3.1696 -1.3956 -3.3059 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695775913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = -41.638444 kcal Electronic energy + Delta-G solvation = -16286.385114 eV Core-core repulsion = 13906.154902 eV Total energy + Delta-G solvation = -2380.230212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.14287 -36.16738 -33.11400 -31.43972 -29.70809 -27.31212 -27.00081 -26.88561 -23.82764 -22.74462 -19.95123 -19.69642 -18.59243 -16.75563 -15.49688 -15.06982 -14.67383 -13.96518 -13.71750 -13.65893 -13.43839 -13.13734 -12.71123 -12.40738 -12.04281 -11.74657 -11.49327 -11.35580 -11.11626 -10.97159 -10.95748 -10.66903 -10.62178 -10.43550 -10.30071 -10.22867 -10.13036 -10.08322 -9.36584 -8.52721 -8.33499 -7.66776 -6.35946 -4.05286 3.42898 3.44418 3.63123 4.54119 4.62878 4.71878 4.79090 5.06520 5.36763 5.43313 5.45105 5.50984 5.59021 5.68569 5.71215 5.82097 5.84825 5.94145 5.98354 6.01347 6.09592 6.13883 6.17465 6.23573 6.29732 6.38905 6.45089 6.53909 6.55914 6.62390 6.84990 6.89643 7.34437 7.45764 8.02784 8.17781 8.30437 8.44571 8.88432 9.67083 11.04651 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.006873 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.226402 B = 4072.852166 C = 4739.156940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.095 3.905 3 H 0.028 0.972 4 C 0.006 3.994 5 C -0.603 4.603 6 H 0.045 0.955 7 C 0.017 3.983 8 N -0.911 5.911 9 Si 1.066 2.934 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.676 5.676 14 C 0.084 3.916 15 H 0.040 0.960 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.067 4.067 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.118 4.118 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.016 0.984 26 H 0.010 0.990 27 H 0.270 0.730 28 H 0.355 0.645 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 4.296 -15.921 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.014 4.014 3 H 0.046 0.954 4 C -0.031 4.031 5 C -0.641 4.641 6 H 0.063 0.937 7 C -0.187 4.187 8 N -0.547 5.547 9 Si 0.894 3.106 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.310 5.310 14 C -0.027 4.027 15 H 0.057 0.943 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.067 4.067 19 C -0.193 4.193 20 C -0.196 4.196 21 C -0.155 4.155 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.034 0.966 26 H 0.028 0.972 27 H 0.080 0.920 28 H 0.176 0.824 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.522 3.606 -15.169 15.794 hybrid contribution -0.540 1.061 -0.650 1.356 sum -3.062 4.667 -15.819 16.775 Atomic orbital electron populations 1.21929 0.96848 1.01256 0.99780 1.21480 0.93230 0.95607 0.91109 0.95363 1.19410 0.96482 0.95556 0.91660 1.21988 0.91954 1.38620 1.11549 0.93693 1.25788 1.06745 0.93468 0.92702 1.70771 1.10478 1.39507 1.33897 0.83586 0.74595 0.76178 0.76197 1.20751 1.21433 1.21610 1.60651 1.34496 1.31720 1.04124 1.22360 0.94494 0.94506 0.91346 0.94257 1.22605 0.97140 1.01340 0.93825 1.22477 0.96128 0.99408 0.97351 1.21096 0.95238 0.95328 0.95080 1.21888 1.01385 0.96776 0.99255 1.21918 0.98944 0.99227 0.99469 1.22442 0.98068 1.01878 0.93158 0.93650 0.92847 0.93700 0.96562 0.97156 0.92000 0.82360 0.90830 0.92240 0.92026 0.92048 0.93208 0.92919 0.92291 0.92749 0.92868 0.93053 0.92144 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.21 37.15 0.34 -2.25 16 2 C 0.10 2.04 2.59 -67.71 -0.18 1.86 16 3 H 0.03 0.63 7.47 -51.93 -0.39 0.25 16 4 C 0.01 0.16 3.88 -27.88 -0.11 0.05 16 5 C -0.60 -16.93 8.12 -34.44 -0.28 -17.21 16 6 H 0.04 1.24 7.49 -52.49 -0.39 0.85 16 7 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 8 N -0.91 -28.01 13.65 55.43 0.76 -27.25 16 9 Si 1.07 25.35 29.90 -169.99 -5.08 20.27 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -13.30 6.15 -98.01 -0.60 -13.90 16 14 C 0.08 1.37 3.17 -66.05 -0.21 1.16 16 15 H 0.04 0.70 7.51 -51.93 -0.39 0.31 16 16 C -0.11 -1.58 5.43 -24.73 -0.13 -1.71 16 17 C -0.12 -1.37 5.90 -25.07 -0.15 -1.52 16 18 C -0.07 -0.80 0.94 -153.39 -0.14 -0.94 16 19 C -0.14 -1.49 8.14 37.16 0.30 -1.18 16 20 C -0.14 -1.46 8.16 37.16 0.30 -1.15 16 21 C -0.12 -1.69 5.60 -25.61 -0.14 -1.84 16 22 H 0.04 0.74 5.48 -51.93 -0.28 0.46 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 26 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 27 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 28 H 0.35 7.66 6.90 -39.29 -0.27 7.39 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 31 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 32 H 0.06 0.70 7.86 -51.93 -0.41 0.29 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.87 7.67 -51.93 -0.40 0.47 16 40 H 0.07 1.12 7.52 -51.93 -0.39 0.73 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -29.24 306.41 -8.20 -37.45 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.40 Total: 3.14 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -0.49 Total: -24.32 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.15 Total: -41.15 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.24 -8.20 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695775913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.193 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds