Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47323 * 119.99461 * 2 1 3 5 5 C 1.50706 * 109.46931 * 184.99880 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 12 12 H 1.48498 * 109.47295 * 60.00420 * 9 7 5 13 13 N 1.46904 * 109.47246 * 240.00103 * 2 1 3 14 14 C 1.46894 * 110.99974 * 84.99886 * 13 2 1 15 15 H 1.08994 * 110.44111 * 36.08927 * 14 13 2 16 16 C 1.54893 * 110.48471 * 273.54395 * 14 13 2 17 17 C 1.54893 * 102.74961 * 203.38412 * 16 14 13 18 18 C 1.54262 * 104.19542 * 37.94037 * 17 16 14 19 19 C 1.53007 * 110.03237 * 95.67578 * 18 17 16 20 20 C 1.53000 * 110.03101 * 217.05688 * 18 17 16 21 21 C 1.53879 * 106.60099 * 336.39325 * 18 17 16 22 22 H 1.09001 * 109.47351 * 60.00508 * 1 2 3 23 23 H 1.09002 * 109.46700 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47237 * 299.99869 * 1 2 3 25 25 H 1.09000 * 109.46986 * 65.00438 * 4 2 1 26 26 H 1.08992 * 109.46974 * 305.00502 * 4 2 1 27 27 H 0.97000 * 119.99706 * 359.97438 * 8 7 5 28 28 H 1.00901 * 110.99902 * 208.95386 * 13 2 1 29 29 H 1.08997 * 110.75543 * 321.69461 * 16 14 13 30 30 H 1.08997 * 110.75278 * 84.88101 * 16 14 13 31 31 H 1.08999 * 110.48351 * 156.62051 * 17 16 14 32 32 H 1.08997 * 110.48111 * 279.13204 * 17 16 14 33 33 H 1.09002 * 109.46894 * 61.45156 * 19 18 17 34 34 H 1.08998 * 109.47179 * 181.44789 * 19 18 17 35 35 H 1.09000 * 109.47042 * 301.45643 * 19 18 17 36 36 H 1.08994 * 109.46988 * 58.55439 * 20 18 17 37 37 H 1.09004 * 109.46907 * 178.54657 * 20 18 17 38 38 H 1.08991 * 109.47415 * 298.54374 * 20 18 17 39 39 H 1.09004 * 110.02993 * 240.71549 * 21 18 17 40 40 H 1.09000 * 110.02836 * 119.28367 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1933 2.3578 8 7 3.5766 -1.8384 3.2991 9 14 6.0921 -1.0608 2.4367 10 1 6.5872 -1.7619 3.6486 11 1 6.6846 -1.6860 1.2270 12 1 6.4844 0.3701 2.4972 13 7 2.0197 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 1 2.3826 1.2191 -2.0230 16 6 0.7149 0.2772 -3.0721 17 6 1.1027 0.7389 -4.4988 18 6 2.4329 0.0113 -4.7833 19 6 2.1684 -1.2790 -5.5619 20 6 3.3682 0.9221 -5.5812 21 6 3.0558 -0.3170 -3.4151 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.7517 -1.7714 1.2057 26 1 1.6053 -0.2616 2.1369 27 1 2.6099 -1.9068 3.2582 28 1 2.9173 -1.1205 -1.0287 29 1 0.2517 -0.7091 -3.0979 30 1 0.0535 1.0006 -2.5953 31 1 0.3412 0.4367 -5.2177 32 1 1.2434 1.8194 -4.5250 33 1 1.7051 -1.0376 -6.5186 34 1 3.1109 -1.7983 -5.7355 35 1 1.5008 -1.9203 -4.9865 36 1 3.5497 1.8382 -5.0193 37 1 4.3141 0.4089 -5.7548 38 1 2.9073 1.1677 -6.5379 39 1 4.0248 0.1728 -3.3188 40 1 3.1696 -1.3956 -3.3059 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695775913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = -58.506961 kcal Electronic energy + Delta-G solvation = -16287.116588 eV Core-core repulsion = 13906.154902 eV Total energy + Delta-G solvation = -2380.961686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30886 -37.78315 -35.09174 -32.90427 -30.96632 -28.96537 -28.25716 -28.07993 -25.30749 -24.50167 -21.49354 -21.17146 -19.60978 -18.92754 -16.80330 -16.46666 -16.24768 -15.64535 -15.15211 -14.87559 -14.62966 -14.53795 -14.13688 -13.75013 -13.40037 -13.11284 -13.00328 -12.83725 -12.61080 -12.52533 -12.34479 -12.28908 -11.97795 -11.81563 -11.61051 -11.48338 -11.36031 -11.28094 -11.05795 -10.64912 -10.56586 -9.27165 -8.69190 -6.39368 1.50031 1.58099 1.77133 2.54694 3.11952 3.36004 3.60694 3.74713 3.95446 4.17902 4.33891 4.41790 4.46653 4.47689 4.52301 4.58572 4.67433 4.82170 4.85306 4.86133 4.93905 4.98589 5.02903 5.05720 5.09442 5.15209 5.17541 5.26480 5.31350 5.36374 5.40956 5.46614 5.50627 5.61321 5.95377 6.15999 6.38964 6.53013 6.62488 7.42153 8.71446 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.006873 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.226402 B = 4072.852166 C = 4739.156940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.103 3.897 3 H 0.017 0.983 4 C 0.011 3.989 5 C -0.609 4.609 6 H 0.047 0.953 7 C -0.036 4.036 8 N -0.936 5.936 9 Si 1.115 2.885 10 H -0.284 1.284 11 H -0.267 1.267 12 H -0.272 1.272 13 N -0.677 5.677 14 C 0.077 3.923 15 H 0.027 0.973 16 C -0.106 4.106 17 C -0.109 4.109 18 C -0.064 4.064 19 C -0.134 4.134 20 C -0.136 4.136 21 C -0.116 4.116 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.049 0.951 25 H -0.007 1.007 26 H -0.011 1.011 27 H 0.255 0.745 28 H 0.340 0.660 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 5.162 -18.162 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.007 4.007 3 H 0.035 0.965 4 C -0.027 4.027 5 C -0.647 4.647 6 H 0.065 0.935 7 C -0.234 4.234 8 N -0.574 5.574 9 Si 0.936 3.064 10 H -0.209 1.209 11 H -0.192 1.192 12 H -0.197 1.197 13 N -0.309 5.309 14 C -0.033 4.033 15 H 0.045 0.955 16 C -0.144 4.144 17 C -0.146 4.146 18 C -0.065 4.065 19 C -0.191 4.191 20 C -0.193 4.193 21 C -0.154 4.154 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.012 0.988 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.160 0.840 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.214 4.489 -17.439 18.143 hybrid contribution -0.679 0.795 0.045 1.046 sum -2.893 5.283 -17.394 18.407 Atomic orbital electron populations 1.21838 0.94351 1.01481 1.01258 1.21327 0.95200 0.94214 0.89945 0.96455 1.19322 0.95698 0.94478 0.93178 1.22315 0.93140 1.37931 1.11327 0.93467 1.27350 1.11192 0.92614 0.92261 1.70910 1.09711 1.41506 1.35243 0.82963 0.69318 0.77250 0.76849 1.20944 1.19243 1.19745 1.60746 1.33494 1.32377 1.04259 1.22512 0.96870 0.93175 0.90695 0.95467 1.22544 0.95545 1.01144 0.95204 1.22460 0.96428 0.99852 0.95893 1.21094 0.95407 0.96239 0.93736 1.21867 1.01446 0.96006 0.99765 1.21890 0.98826 0.98644 0.99933 1.22440 0.97689 1.00988 0.94257 0.91168 0.93223 0.93237 0.98825 0.99259 0.93563 0.84042 0.91531 0.92051 0.90191 0.91240 0.91339 0.92758 0.93356 0.93098 0.92656 0.91311 0.92418 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.21 71.98 0.66 -4.11 16 2 C 0.10 4.46 2.59 44.91 0.12 4.58 16 3 H 0.02 0.79 7.47 -2.38 -0.02 0.77 16 4 C 0.01 0.56 3.88 29.85 0.12 0.68 16 5 C -0.61 -34.79 8.12 25.60 0.21 -34.58 16 6 H 0.05 2.62 7.49 -2.91 -0.02 2.60 16 7 C -0.04 -2.13 5.46 84.66 0.46 -1.67 16 8 N -0.94 -58.91 13.65 21.45 0.29 -58.62 16 9 Si 1.11 50.72 29.90 68.60 2.05 52.78 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 13 N -0.68 -26.78 6.15 -463.99 -2.85 -29.63 16 14 C 0.08 2.49 3.17 45.99 0.15 2.63 16 15 H 0.03 0.95 7.51 -2.39 -0.02 0.93 16 16 C -0.11 -2.82 5.43 31.89 0.17 -2.65 16 17 C -0.11 -2.26 5.90 31.67 0.19 -2.07 16 18 C -0.06 -1.37 0.94 -51.46 -0.05 -1.42 16 19 C -0.13 -2.58 8.14 71.98 0.59 -2.00 16 20 C -0.14 -2.47 8.16 71.98 0.59 -1.88 16 21 C -0.12 -3.22 5.60 31.32 0.18 -3.05 16 22 H 0.07 2.19 5.48 -2.39 -0.01 2.17 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H -0.01 -0.38 8.01 -2.39 -0.02 -0.40 16 26 H -0.01 -0.62 8.01 -2.39 -0.02 -0.64 16 27 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 28 H 0.34 14.98 6.90 -89.69 -0.62 14.36 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.60 6.55 -2.39 -0.02 1.58 16 31 H 0.08 1.41 7.84 -2.39 -0.02 1.40 16 32 H 0.07 1.36 7.86 -2.39 -0.02 1.34 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.61 7.67 -2.39 -0.02 1.59 16 40 H 0.06 1.90 7.52 -2.39 -0.02 1.88 16 Total: -1.00 -63.33 306.41 3.32 -60.01 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.46 Total: 21.01 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 3.37 Total: -45.55 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -2.56 Total: -88.25 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.78 kcal Total: -63.33 3.32 -60.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695775913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.504 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds