Wall clock time and date at job start Mon Mar 30 2020 02:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46903 * 111.00036 * 275.00445 * 13 2 1 15 15 C 1.52996 * 109.46960 * 179.97438 * 14 13 2 16 16 C 1.53001 * 110.02072 * 58.60625 * 15 14 13 17 17 C 1.54267 * 110.03069 * 297.16320 * 15 14 13 18 18 C 1.54897 * 104.19490 * 217.10835 * 17 15 14 19 19 C 1.54892 * 102.74691 * 37.94047 * 18 17 15 20 20 C 1.53874 * 110.02945 * 179.97438 * 15 14 13 21 21 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 23 23 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 24 24 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 25 25 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99341 * 38.95202 * 13 2 1 28 28 H 1.08996 * 109.46688 * 299.99657 * 14 13 2 29 29 H 1.08999 * 109.47182 * 59.99343 * 14 13 2 30 30 H 1.08998 * 109.46649 * 60.69867 * 16 15 14 31 31 H 1.08997 * 109.47142 * 180.70246 * 16 15 14 32 32 H 1.08998 * 109.46849 * 300.69832 * 16 15 14 33 33 H 1.09003 * 110.48950 * 335.78501 * 17 15 14 34 34 H 1.08999 * 110.48617 * 98.42711 * 17 15 14 35 35 H 1.08994 * 110.75100 * 279.62595 * 18 17 15 36 36 H 1.09001 * 110.75522 * 156.25551 * 18 17 15 37 37 H 1.09003 * 110.48166 * 203.37808 * 19 18 17 38 38 H 1.09005 * 110.59714 * 80.79337 * 19 18 17 39 39 H 1.09003 * 110.03179 * 238.56358 * 20 15 14 40 40 H 1.08995 * 110.03607 * 359.95253 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.5825 -0.2803 -1.2728 11 1 6.6894 -2.4085 -2.4309 12 1 6.4800 -0.3493 -3.6943 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5952 -0.5332 3.5744 16 6 3.9782 -1.1214 3.2875 17 6 1.6094 -1.6581 3.9521 18 6 1.6253 -1.6729 5.5009 19 6 1.7209 -0.1683 5.8561 20 6 2.6666 0.4142 4.7848 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6052 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 4.0598 -2.2352 -4.0406 27 1 1.4496 -1.4979 1.4099 28 1 2.7588 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 4.6753 -0.3154 3.0585 31 1 4.3292 -1.6680 4.1627 32 1 3.9150 -1.7999 2.4367 33 1 0.6096 -1.4291 3.5831 34 1 1.9527 -2.6146 3.5579 35 1 2.4954 -2.2137 5.8730 36 1 0.7042 -2.1045 5.8926 37 1 2.1457 -0.0376 6.8514 38 1 0.7399 0.3030 5.7960 39 1 3.6862 0.4538 5.1682 40 1 2.3368 1.4125 4.4975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695778910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:59 Heat of formation + Delta-G solvation = -35.569577 kcal Electronic energy + Delta-G solvation = -16294.245483 eV Core-core repulsion = 13914.278437 eV Total energy + Delta-G solvation = -2379.967046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.07793 -36.17056 -32.79423 -31.64783 -29.11759 -28.61590 -27.17220 -25.54058 -23.52560 -22.62732 -20.71733 -19.53589 -18.31653 -16.17243 -15.64631 -15.08226 -14.51812 -14.32376 -14.18970 -13.53575 -13.17509 -12.72146 -12.53632 -12.29415 -11.89119 -11.74201 -11.47275 -11.30490 -11.07417 -11.02856 -10.93737 -10.68943 -10.50528 -10.43065 -10.30591 -10.19125 -10.03178 -9.95642 -9.17562 -8.89435 -8.20469 -7.42791 -5.82523 -3.79434 3.41379 3.48636 3.54057 4.60227 4.61460 4.71936 4.80135 5.06987 5.47101 5.48539 5.51145 5.55062 5.60508 5.70088 5.73000 5.80647 5.90282 5.93467 5.96127 6.05481 6.08568 6.12988 6.18298 6.20419 6.35220 6.36740 6.53077 6.57628 6.64102 6.69957 6.90264 7.10756 7.65404 7.77213 8.11845 8.14476 8.27686 8.67332 9.26379 9.81550 11.29807 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030312 B = 0.006941 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.505475 B = 4032.837995 C = 4590.798766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.483 4.483 6 H 0.059 0.941 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.660 5.660 14 C 0.073 3.927 15 C -0.061 4.061 16 C -0.128 4.128 17 C -0.115 4.115 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.117 4.117 21 H 0.049 0.951 22 H 0.036 0.964 23 H 0.055 0.945 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.256 0.744 27 H 0.329 0.671 28 H 0.065 0.935 29 H 0.015 0.985 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 2.457 15.991 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.521 4.521 6 H 0.077 0.923 7 C -0.151 4.151 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.290 5.290 14 C -0.057 4.057 15 C -0.061 4.061 16 C -0.185 4.185 17 C -0.153 4.153 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.155 4.155 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.147 0.853 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.802 2.459 15.661 16.302 hybrid contribution 0.043 0.156 0.034 0.165 sum -3.759 2.615 15.694 16.348 Atomic orbital electron populations 1.22554 0.99767 1.01057 1.00458 1.21783 0.89703 0.98110 0.92504 0.91989 1.19115 0.96228 0.95343 0.89765 1.21188 0.91931 1.32559 1.06468 0.92313 1.25005 0.97878 0.96061 0.96112 1.69975 1.35011 1.37380 1.12316 0.86600 0.86664 0.77521 0.77558 1.19868 1.21352 1.21499 1.60540 1.57463 1.08550 1.02461 1.22054 0.97760 0.95473 0.90420 1.21187 0.96360 0.94733 0.93829 1.21762 0.94543 1.01064 1.01166 1.22466 0.98859 0.99000 0.94976 1.22479 1.01090 0.96194 0.96371 1.22346 0.99466 0.95994 0.98288 1.22277 0.99519 0.98712 0.94965 0.93143 0.94524 0.92626 0.96635 0.96584 0.93484 0.85322 0.91667 0.96666 0.93194 0.94187 0.90530 0.92156 0.91186 0.91699 0.92161 0.92253 0.92085 0.91820 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.16 37.16 0.34 -2.75 16 2 C 0.09 1.81 2.53 -67.71 -0.17 1.64 16 3 H 0.06 1.31 7.80 -51.92 -0.40 0.91 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.48 -13.76 8.84 -34.44 -0.30 -14.06 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.81 13.29 55.43 0.74 -27.07 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 N -0.66 -12.30 5.17 -106.73 -0.55 -12.85 16 14 C 0.07 1.14 4.08 -3.82 -0.02 1.13 16 15 C -0.06 -0.82 0.74 -153.39 -0.11 -0.94 16 16 C -0.13 -1.91 7.98 37.16 0.30 -1.61 16 17 C -0.12 -1.43 4.91 -25.07 -0.12 -1.55 16 18 C -0.12 -1.30 6.91 -24.73 -0.17 -1.48 16 19 C -0.12 -1.26 6.83 -25.05 -0.17 -1.44 16 20 C -0.12 -1.36 6.11 -25.59 -0.16 -1.52 16 21 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 22 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.33 5.81 7.46 -39.29 -0.29 5.52 16 28 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 29 H 0.02 0.23 7.41 -51.93 -0.38 -0.15 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.33 7.58 -51.93 -0.39 0.93 16 33 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 34 H 0.07 0.90 7.84 -51.93 -0.41 0.50 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.72 7.67 -51.93 -0.40 0.33 16 40 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -29.75 311.71 -8.61 -38.36 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.66 Total: 0.02 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -0.82 Total: -20.54 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.19 Total: -39.93 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.75 -8.61 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695778910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.794 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds