Wall clock time and date at job start Mon Mar 30 2020 02:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46903 * 111.00036 * 275.00445 * 13 2 1 15 15 C 1.52996 * 109.46960 * 179.97438 * 14 13 2 16 16 C 1.53001 * 110.02072 * 58.60625 * 15 14 13 17 17 C 1.54267 * 110.03069 * 297.16320 * 15 14 13 18 18 C 1.54897 * 104.19490 * 217.10835 * 17 15 14 19 19 C 1.54892 * 102.74691 * 37.94047 * 18 17 15 20 20 C 1.53874 * 110.02945 * 179.97438 * 15 14 13 21 21 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 23 23 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 24 24 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 25 25 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99341 * 38.95202 * 13 2 1 28 28 H 1.08996 * 109.46688 * 299.99657 * 14 13 2 29 29 H 1.08999 * 109.47182 * 59.99343 * 14 13 2 30 30 H 1.08998 * 109.46649 * 60.69867 * 16 15 14 31 31 H 1.08997 * 109.47142 * 180.70246 * 16 15 14 32 32 H 1.08998 * 109.46849 * 300.69832 * 16 15 14 33 33 H 1.09003 * 110.48950 * 335.78501 * 17 15 14 34 34 H 1.08999 * 110.48617 * 98.42711 * 17 15 14 35 35 H 1.08994 * 110.75100 * 279.62595 * 18 17 15 36 36 H 1.09001 * 110.75522 * 156.25551 * 18 17 15 37 37 H 1.09003 * 110.48166 * 203.37808 * 19 18 17 38 38 H 1.09005 * 110.59714 * 80.79337 * 19 18 17 39 39 H 1.09003 * 110.03179 * 238.56358 * 20 15 14 40 40 H 1.08995 * 110.03607 * 359.95253 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.5825 -0.2803 -1.2728 11 1 6.6894 -2.4085 -2.4309 12 1 6.4800 -0.3493 -3.6943 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5952 -0.5332 3.5744 16 6 3.9782 -1.1214 3.2875 17 6 1.6094 -1.6581 3.9521 18 6 1.6253 -1.6729 5.5009 19 6 1.7209 -0.1683 5.8561 20 6 2.6666 0.4142 4.7848 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6052 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 4.0598 -2.2352 -4.0406 27 1 1.4496 -1.4979 1.4099 28 1 2.7588 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 4.6753 -0.3154 3.0585 31 1 4.3292 -1.6680 4.1627 32 1 3.9150 -1.7999 2.4367 33 1 0.6096 -1.4291 3.5831 34 1 1.9527 -2.6146 3.5579 35 1 2.4954 -2.2137 5.8730 36 1 0.7042 -2.1045 5.8926 37 1 2.1457 -0.0376 6.8514 38 1 0.7399 0.3030 5.7960 39 1 3.6862 0.4538 5.1682 40 1 2.3368 1.4125 4.4975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695778910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:59 Heat of formation + Delta-G solvation = -52.433593 kcal Electronic energy + Delta-G solvation = -16294.976762 eV Core-core repulsion = 13914.278437 eV Total energy + Delta-G solvation = -2380.698325 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17111 -37.69520 -34.79242 -33.05705 -30.57438 -29.57011 -29.03376 -26.76840 -25.15440 -24.21426 -21.78341 -21.04144 -19.42816 -18.35783 -16.85007 -16.52145 -16.09028 -15.72418 -15.63410 -14.66053 -14.52220 -14.23946 -13.88136 -13.71803 -13.51931 -13.20859 -13.06908 -12.94485 -12.61491 -12.38949 -12.35255 -11.91835 -11.89775 -11.82702 -11.51131 -11.42888 -11.28588 -11.25479 -11.06322 -10.91010 -10.48020 -8.90974 -8.08563 -6.12816 1.40424 1.41319 1.54370 2.47890 3.23502 3.43782 3.74233 3.80843 3.97438 4.24437 4.38935 4.42434 4.52167 4.57764 4.58904 4.60785 4.72055 4.84369 4.86852 4.88981 5.00592 5.05087 5.07289 5.16976 5.22779 5.24516 5.28004 5.34412 5.46556 5.52021 5.53044 5.56807 5.65217 5.73507 5.91943 6.37322 6.54946 6.79946 7.01447 7.52560 9.03936 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030312 B = 0.006941 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.505475 B = 4032.837995 C = 4590.798766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 H 0.054 0.946 4 C 0.038 3.962 5 C -0.493 4.493 6 H 0.055 0.945 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.675 5.675 14 C 0.077 3.923 15 C -0.059 4.059 16 C -0.124 4.124 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.115 4.115 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.054 0.946 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.258 0.742 27 H 0.334 0.666 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 2.982 18.074 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.531 4.531 6 H 0.073 0.927 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.306 5.306 14 C -0.052 4.052 15 C -0.059 4.059 16 C -0.181 4.181 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.153 4.153 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.780 2.992 17.761 18.404 hybrid contribution 0.032 -0.017 -0.626 0.627 sum -3.748 2.975 17.135 17.791 Atomic orbital electron populations 1.22401 0.96929 1.01647 1.01753 1.21449 0.91930 0.96717 0.91101 0.92742 1.18999 0.95151 0.94127 0.91676 1.21486 0.93369 1.32080 1.06189 0.92713 1.25856 1.02825 0.95801 0.95832 1.70101 1.36964 1.38373 1.13009 0.85534 0.80777 0.77664 0.77850 1.19088 1.20875 1.20768 1.60373 1.57889 1.09358 1.02964 1.22057 0.98250 0.94768 0.90104 1.21180 0.95623 0.95449 0.93696 1.21703 0.95479 1.00259 1.00688 1.22439 0.98306 0.97863 0.96677 1.22469 1.01958 0.96700 0.94557 1.22336 0.99426 0.95416 0.98417 1.22250 1.00338 0.98275 0.94414 0.92917 0.91843 0.92655 0.99175 0.99179 0.93332 0.84738 0.93125 0.95244 0.94254 0.92408 0.93514 0.92090 0.92237 0.91437 0.90820 0.90712 0.91495 0.91469 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.62 9.16 71.98 0.66 -4.96 16 2 C 0.10 4.03 2.53 44.92 0.11 4.14 16 3 H 0.05 2.31 7.80 -2.38 -0.02 2.29 16 4 C 0.04 2.03 4.65 29.85 0.14 2.16 16 5 C -0.49 -28.65 8.84 25.60 0.23 -28.43 16 6 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 7 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 8 N -0.94 -59.00 13.29 21.45 0.28 -58.72 16 9 Si 0.96 46.46 29.54 68.60 2.03 48.49 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 N -0.68 -25.10 5.17 -491.57 -2.54 -27.64 16 14 C 0.08 2.36 4.08 86.30 0.35 2.71 16 15 C -0.06 -1.52 0.74 -51.46 -0.04 -1.56 16 16 C -0.12 -3.63 7.98 71.98 0.57 -3.05 16 17 C -0.12 -2.65 4.91 31.67 0.16 -2.49 16 18 C -0.12 -2.16 6.91 31.89 0.22 -1.94 16 19 C -0.12 -2.03 6.83 31.69 0.22 -1.81 16 20 C -0.11 -2.40 6.11 31.34 0.19 -2.21 16 21 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 22 H 0.06 1.78 7.45 -2.38 -0.02 1.76 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 25 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 26 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.33 11.74 7.46 -89.69 -0.67 11.07 16 28 H 0.05 1.68 8.05 -2.39 -0.02 1.66 16 29 H 0.03 0.82 7.41 -2.39 -0.02 0.80 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.63 7.58 -2.39 -0.02 1.61 16 33 H 0.06 1.39 7.79 -2.39 -0.02 1.37 16 34 H 0.06 1.48 7.84 -2.39 -0.02 1.46 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.07 1.36 7.67 -2.39 -0.02 1.35 16 40 H 0.06 1.30 7.67 -2.39 -0.02 1.28 16 Total: -1.00 -64.17 311.71 3.34 -60.83 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.30 Total: 14.46 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.27 Total: -37.42 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -2.25 Total: -86.36 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -64.17 3.34 -60.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695778910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.393 kcal (2) G-P(sol) polarization free energy of solvation -64.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds