Wall clock time and date at job start Mon Mar 30 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.50698 * 109.47216 * 184.99588 * 4 2 1 6 6 H 1.07999 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47261 * 60.00176 * 9 7 5 11 11 H 1.48499 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47160 * 300.00320 * 9 7 5 13 13 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 14 14 C 1.46905 * 110.99870 * 84.99904 * 13 2 1 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 2 16 16 C 1.52999 * 110.02091 * 58.60850 * 15 14 13 17 17 C 1.54266 * 110.03224 * 297.16676 * 15 14 13 18 18 C 1.54893 * 104.19784 * 217.10661 * 17 15 14 19 19 C 1.54889 * 102.74926 * 37.94256 * 18 17 15 20 20 C 1.53876 * 110.03463 * 180.02562 * 15 14 13 21 21 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 23 23 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 24 24 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 25 25 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 26 26 H 0.96998 * 119.99857 * 179.97438 * 8 7 5 27 27 H 1.00901 * 111.00067 * 208.95080 * 13 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 14 13 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 14 13 2 30 30 H 1.09005 * 109.46725 * 60.69804 * 16 15 14 31 31 H 1.09000 * 109.47572 * 180.70200 * 16 15 14 32 32 H 1.08996 * 109.47123 * 300.70297 * 16 15 14 33 33 H 1.09002 * 110.49013 * 335.78384 * 17 15 14 34 34 H 1.09000 * 110.48812 * 98.43187 * 17 15 14 35 35 H 1.08997 * 110.75741 * 279.62886 * 18 17 15 36 36 H 1.09001 * 110.75842 * 156.26012 * 18 17 15 37 37 H 1.09002 * 110.48997 * 203.38353 * 19 18 17 38 38 H 1.08994 * 110.60246 * 80.78990 * 19 18 17 39 39 H 1.09002 * 110.03316 * 238.57186 * 20 15 14 40 40 H 1.09005 * 110.02682 * 359.94590 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1927 2.3582 8 7 3.5763 -1.8370 3.3000 9 14 6.0919 -1.0604 2.4372 10 1 6.4844 0.3706 2.4965 11 1 6.5870 -1.7605 3.6497 12 1 6.6845 -1.6865 1.2280 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 6 1.6725 -1.7132 -3.8859 17 6 4.0317 -1.0358 -3.3236 18 6 4.7355 -0.8738 -4.6939 19 6 4.1433 0.4541 -5.2275 20 6 2.6665 0.4144 -4.7848 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2618 2.1369 25 1 1.7516 -1.7715 1.2055 26 1 4.0607 -2.2437 4.0354 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 0.6692 -1.3439 -4.0983 31 1 2.0525 -2.2523 -4.7537 32 1 1.6386 -2.3842 -3.0276 33 1 4.5235 -0.4238 -2.5675 34 1 4.0221 -2.0829 -3.0212 35 1 4.4856 -1.7022 -5.3568 36 1 5.8149 -0.7918 -4.5664 37 1 4.2149 0.4943 -6.3144 38 1 4.6524 1.3081 -4.7807 39 1 2.0444 0.0333 -5.5947 40 1 2.3351 1.4124 -4.4978 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695778911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:01 Heat of formation + Delta-G solvation = -40.567472 kcal Electronic energy + Delta-G solvation = -16353.555137 eV Core-core repulsion = 13973.371366 eV Total energy + Delta-G solvation = -2380.183771 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.02164 -36.09092 -32.86078 -31.65218 -29.14293 -28.55651 -27.34536 -25.54274 -23.60283 -22.51946 -20.61894 -19.25711 -18.27565 -16.32253 -15.61013 -15.12633 -14.77290 -14.44312 -14.05414 -13.52180 -13.13413 -12.75213 -12.64726 -12.04190 -11.81463 -11.63358 -11.41089 -11.19707 -11.18386 -11.00254 -10.84987 -10.71114 -10.59093 -10.39667 -10.34103 -10.22692 -10.11697 -9.95199 -9.15642 -9.03879 -8.37599 -7.53126 -6.00985 -4.03934 3.31419 3.36462 3.38300 4.44243 4.65977 4.78621 4.85566 5.14498 5.36375 5.51213 5.52954 5.59636 5.63713 5.77087 5.79607 5.94831 5.98482 5.99546 6.09409 6.12088 6.15533 6.25561 6.31471 6.34943 6.38750 6.45894 6.56471 6.60145 6.64438 6.78467 6.98124 7.00586 7.58592 7.66616 7.99332 8.13847 8.35785 8.42417 9.02093 9.59969 11.09923 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.008031 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.451669 B = 3485.839346 C = 4326.846578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.026 0.974 4 C 0.021 3.979 5 C -0.523 4.523 6 H 0.050 0.950 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.072 3.928 15 C -0.062 4.062 16 C -0.126 4.126 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.115 4.115 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.020 0.980 25 H 0.025 0.975 26 H 0.261 0.739 27 H 0.354 0.646 28 H 0.059 0.941 29 H 0.020 0.980 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 2.839 -14.762 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.044 0.956 4 C -0.016 4.016 5 C -0.561 4.561 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.315 5.315 14 C -0.058 4.058 15 C -0.062 4.062 16 C -0.183 4.183 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.154 4.154 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.175 0.825 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.840 2.486 -14.742 15.063 hybrid contribution 1.833 0.681 0.409 1.998 sum -0.008 3.167 -14.333 14.679 Atomic orbital electron populations 1.21781 0.96870 1.01213 0.99309 1.21596 0.93269 0.95795 0.91632 0.95567 1.19269 0.95331 0.96170 0.90876 1.21135 0.92273 1.34450 1.08251 0.93141 1.24980 0.98145 0.95226 0.95710 1.69952 1.35546 1.35597 1.11937 0.86720 0.86034 0.78146 0.77481 1.20396 1.21269 1.20167 1.60567 1.34681 1.32030 1.04186 1.22036 0.99089 0.93670 0.91013 1.21187 0.95360 0.95515 0.94131 1.21744 0.97901 0.97531 1.01112 1.22486 0.94590 1.01742 0.96704 1.22480 0.99328 0.97194 0.97140 1.22330 0.96059 0.97967 0.99775 1.22247 0.96400 0.99397 0.97309 0.92709 0.93501 0.94607 0.96185 0.95635 0.92919 0.82512 0.92222 0.96158 0.93486 0.93988 0.91058 0.91542 0.91145 0.91837 0.92039 0.92292 0.91956 0.91973 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.41 37.15 0.35 -2.12 16 2 C 0.09 1.83 2.59 -67.72 -0.18 1.66 16 3 H 0.03 0.58 7.80 -51.93 -0.40 0.17 16 4 C 0.02 0.54 4.57 -27.88 -0.13 0.41 16 5 C -0.52 -14.46 8.12 -34.44 -0.28 -14.74 16 6 H 0.05 1.36 7.49 -52.49 -0.39 0.97 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -13.13 5.51 -106.73 -0.59 -13.72 16 14 C 0.07 1.17 4.08 -3.82 -0.02 1.16 16 15 C -0.06 -0.86 0.74 -153.39 -0.11 -0.97 16 16 C -0.13 -1.71 7.98 37.16 0.30 -1.41 16 17 C -0.12 -1.69 4.91 -25.07 -0.12 -1.81 16 18 C -0.12 -1.48 6.91 -24.74 -0.17 -1.65 16 19 C -0.12 -1.39 6.83 -25.10 -0.17 -1.56 16 20 C -0.12 -1.38 6.11 -25.64 -0.16 -1.54 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.03 0.59 7.45 -51.93 -0.39 0.20 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.35 7.44 6.20 -39.29 -0.24 7.20 16 28 H 0.06 0.95 7.44 -51.93 -0.39 0.56 16 29 H 0.02 0.35 8.03 -51.93 -0.42 -0.07 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.09 7.58 -51.93 -0.39 0.70 16 33 H 0.07 1.06 7.79 -51.93 -0.40 0.65 16 34 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 40 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 LS Contribution 310.06 15.07 4.67 4.67 Total: -1.00 -28.33 310.06 -8.58 -36.91 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.60 Total: 2.46 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.78 Total: -20.92 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.15 Total: -39.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.33 -8.58 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695778911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.659 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds