Wall clock time and date at job start Mon Mar 30 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.50698 * 109.47216 * 184.99588 * 4 2 1 6 6 H 1.07999 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47261 * 60.00176 * 9 7 5 11 11 H 1.48499 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47160 * 300.00320 * 9 7 5 13 13 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 14 14 C 1.46905 * 110.99870 * 84.99904 * 13 2 1 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 2 16 16 C 1.52999 * 110.02091 * 58.60850 * 15 14 13 17 17 C 1.54266 * 110.03224 * 297.16676 * 15 14 13 18 18 C 1.54893 * 104.19784 * 217.10661 * 17 15 14 19 19 C 1.54889 * 102.74926 * 37.94256 * 18 17 15 20 20 C 1.53876 * 110.03463 * 180.02562 * 15 14 13 21 21 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 23 23 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 24 24 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 25 25 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 26 26 H 0.96998 * 119.99857 * 179.97438 * 8 7 5 27 27 H 1.00901 * 111.00067 * 208.95080 * 13 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 14 13 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 14 13 2 30 30 H 1.09005 * 109.46725 * 60.69804 * 16 15 14 31 31 H 1.09000 * 109.47572 * 180.70200 * 16 15 14 32 32 H 1.08996 * 109.47123 * 300.70297 * 16 15 14 33 33 H 1.09002 * 110.49013 * 335.78384 * 17 15 14 34 34 H 1.09000 * 110.48812 * 98.43187 * 17 15 14 35 35 H 1.08997 * 110.75741 * 279.62886 * 18 17 15 36 36 H 1.09001 * 110.75842 * 156.26012 * 18 17 15 37 37 H 1.09002 * 110.48997 * 203.38353 * 19 18 17 38 38 H 1.08994 * 110.60246 * 80.78990 * 19 18 17 39 39 H 1.09002 * 110.03316 * 238.57186 * 20 15 14 40 40 H 1.09005 * 110.02682 * 359.94590 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1927 2.3582 8 7 3.5763 -1.8370 3.3000 9 14 6.0919 -1.0604 2.4372 10 1 6.4844 0.3706 2.4965 11 1 6.5870 -1.7605 3.6497 12 1 6.6845 -1.6865 1.2280 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 6 1.6725 -1.7132 -3.8859 17 6 4.0317 -1.0358 -3.3236 18 6 4.7355 -0.8738 -4.6939 19 6 4.1433 0.4541 -5.2275 20 6 2.6665 0.4144 -4.7848 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2618 2.1369 25 1 1.7516 -1.7715 1.2055 26 1 4.0607 -2.2437 4.0354 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 0.6692 -1.3439 -4.0983 31 1 2.0525 -2.2523 -4.7537 32 1 1.6386 -2.3842 -3.0276 33 1 4.5235 -0.4238 -2.5675 34 1 4.0221 -2.0829 -3.0212 35 1 4.4856 -1.7022 -5.3568 36 1 5.8149 -0.7918 -4.5664 37 1 4.2149 0.4943 -6.3144 38 1 4.6524 1.3081 -4.7807 39 1 2.0444 0.0333 -5.5947 40 1 2.3351 1.4124 -4.4978 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695778911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:01 Heat of formation + Delta-G solvation = -56.136446 kcal Electronic energy + Delta-G solvation = -16354.230258 eV Core-core repulsion = 13973.371366 eV Total energy + Delta-G solvation = -2380.858893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.17055 -37.70606 -34.82918 -33.08756 -30.55029 -29.62451 -29.24062 -26.76150 -25.27501 -24.13300 -21.66798 -20.89958 -19.42244 -18.51557 -16.93827 -16.55357 -16.31187 -15.97038 -15.51044 -14.78527 -14.50838 -14.06892 -14.01950 -13.57084 -13.46579 -13.24841 -13.00273 -12.76009 -12.63736 -12.55899 -12.38770 -12.03122 -11.93365 -11.86152 -11.52982 -11.48768 -11.30225 -11.22419 -11.06759 -10.92122 -10.57933 -9.11888 -8.20313 -6.30912 1.37769 1.39791 1.47607 2.38842 3.11064 3.43989 3.72623 3.79278 3.95708 4.29486 4.41772 4.43762 4.55888 4.57911 4.60322 4.69097 4.74870 4.84596 4.87357 4.90664 5.01605 5.04024 5.06969 5.15581 5.21766 5.24755 5.28332 5.33160 5.44231 5.46801 5.51159 5.53407 5.58382 5.67667 5.83612 6.20475 6.46710 6.69763 6.83839 7.37649 8.91160 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.008031 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.451669 B = 3485.839346 C = 4326.846578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.094 3.906 3 H 0.019 0.981 4 C 0.028 3.972 5 C -0.534 4.534 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.266 1.266 13 N -0.679 5.679 14 C 0.073 3.927 15 C -0.059 4.059 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.112 4.112 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.060 0.940 24 H -0.006 1.006 25 H -0.003 1.003 26 H 0.263 0.737 27 H 0.341 0.659 28 H 0.069 0.931 29 H 0.010 0.990 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 3.488 -16.939 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 H 0.037 0.963 4 C -0.009 4.009 5 C -0.572 4.572 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.190 1.190 13 N -0.311 5.311 14 C -0.056 4.056 15 C -0.060 4.060 16 C -0.178 4.178 17 C -0.160 4.160 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.150 4.150 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.012 0.988 25 H 0.016 0.984 26 H 0.072 0.928 27 H 0.161 0.839 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.276 3.148 -16.939 17.276 hybrid contribution 1.620 0.472 1.102 2.015 sum 0.344 3.621 -15.837 16.250 Atomic orbital electron populations 1.21685 0.94484 1.01385 1.00769 1.21429 0.95156 0.94574 0.90469 0.96327 1.19126 0.94805 0.94708 0.92268 1.21460 0.93292 1.34197 1.08291 0.92784 1.25874 1.03296 0.94786 0.95298 1.70086 1.37601 1.36606 1.12660 0.85612 0.79862 0.78454 0.77811 1.19588 1.20868 1.19048 1.60623 1.33816 1.32504 1.04200 1.22130 0.99523 0.93137 0.90814 1.21189 0.94911 0.95957 0.93911 1.21685 0.98322 0.96997 1.00786 1.22474 0.95269 1.00481 0.97746 1.22470 0.99369 0.98213 0.95606 1.22330 0.95228 0.97204 1.01062 1.22224 0.97341 0.98845 0.96552 0.93164 0.93067 0.92100 0.98809 0.98434 0.92792 0.83934 0.91252 0.97185 0.92744 0.92293 0.93404 0.93837 0.92355 0.90611 0.91667 0.90136 0.92337 0.90361 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.41 71.98 0.68 -3.86 16 2 C 0.09 4.00 2.59 44.91 0.12 4.12 16 3 H 0.02 0.83 7.80 -2.39 -0.02 0.81 16 4 C 0.03 1.51 4.57 29.85 0.14 1.65 16 5 C -0.53 -30.17 8.12 25.60 0.21 -29.96 16 6 H 0.05 2.95 7.49 -2.91 -0.02 2.93 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 9 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 13 N -0.68 -26.35 5.51 -491.58 -2.71 -29.06 16 14 C 0.07 2.33 4.08 86.30 0.35 2.68 16 15 C -0.06 -1.56 0.74 -51.46 -0.04 -1.60 16 16 C -0.12 -3.06 7.98 71.98 0.57 -2.49 16 17 C -0.12 -3.41 4.91 31.67 0.16 -3.25 16 18 C -0.12 -2.58 6.91 31.89 0.22 -2.36 16 19 C -0.12 -2.35 6.83 31.65 0.22 -2.13 16 20 C -0.11 -2.34 6.11 31.30 0.19 -2.15 16 21 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.05 1.78 8.14 -2.38 -0.02 1.77 16 23 H 0.06 1.89 7.45 -2.39 -0.02 1.87 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.34 14.71 6.20 -89.69 -0.56 14.15 16 28 H 0.07 2.07 7.44 -2.39 -0.02 2.05 16 29 H 0.01 0.34 8.03 -2.39 -0.02 0.32 16 30 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.43 7.58 -2.39 -0.02 1.42 16 33 H 0.04 1.39 7.79 -2.39 -0.02 1.37 16 34 H 0.06 1.73 7.84 -2.39 -0.02 1.71 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.42 7.67 -2.39 -0.02 1.40 16 40 H 0.06 1.31 7.67 -2.38 -0.02 1.29 16 Total: -1.00 -61.21 310.06 3.29 -57.92 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.41 Total: 19.75 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 3.27 Total: -38.56 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.42 Total: -85.54 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.21 3.29 -57.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695778911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.783 kcal (2) G-P(sol) polarization free energy of solvation -61.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds