Wall clock time and date at job start Mon Mar 30 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47036 * 2 1 4 4 C 1.52998 * 109.47670 * 120.00115 * 2 1 3 5 5 C 1.53008 * 115.54663 * 305.97389 * 4 2 1 6 6 N 1.46902 * 109.46694 * 294.01292 * 5 4 2 7 7 C 1.46900 * 110.99543 * 177.94666 * 6 5 4 8 8 H 1.08992 * 109.47206 * 325.00140 * 7 6 5 9 9 C 1.53003 * 109.46814 * 85.00362 * 7 6 5 10 10 C 1.52998 * 109.46757 * 205.00082 * 7 6 5 11 11 C 1.50697 * 109.47614 * 65.00506 * 10 7 6 12 12 H 1.08005 * 119.99200 * 359.97438 * 11 10 7 13 13 C 1.37873 * 120.00687 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00262 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99637 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47082 * 89.99940 * 15 13 11 17 17 H 1.48503 * 109.46931 * 209.99656 * 15 13 11 18 18 H 1.48498 * 109.47051 * 329.99755 * 15 13 11 19 19 C 1.53000 * 117.49832 * 91.63528 * 4 2 1 20 20 C 1.52991 * 117.50180 * 160.29646 * 4 2 1 21 21 H 1.08997 * 109.47343 * 66.13207 * 1 2 3 22 22 H 1.08994 * 109.47092 * 186.13206 * 1 2 3 23 23 H 1.09001 * 109.47017 * 306.13228 * 1 2 3 24 24 H 1.09007 * 109.46969 * 240.00246 * 2 1 3 25 25 H 1.09004 * 109.47174 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46928 * 299.99930 * 3 2 1 27 27 H 1.08991 * 109.47384 * 60.00146 * 3 2 1 28 28 H 1.08997 * 109.46894 * 174.01510 * 5 4 2 29 29 H 1.09000 * 109.46884 * 54.01544 * 5 4 2 30 30 H 1.00897 * 110.99869 * 301.90459 * 6 5 4 31 31 H 1.08999 * 109.46666 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.46811 * 299.99684 * 9 7 6 33 33 H 1.09000 * 109.47114 * 60.00044 * 9 7 6 34 34 H 1.09006 * 109.47391 * 304.99966 * 10 7 6 35 35 H 1.09007 * 109.46847 * 185.00550 * 10 7 6 36 36 H 0.97005 * 119.99852 * 180.02562 * 14 13 11 37 37 H 1.08997 * 117.49681 * 215.00683 * 19 4 2 38 38 H 1.08997 * 117.49873 * 0.02807 * 19 4 2 39 39 H 1.09000 * 117.50212 * 359.97438 * 20 4 2 40 40 H 1.09004 * 117.49790 * 145.00018 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.4956 -0.2000 2.5807 6 7 1.9825 1.1674 2.8071 7 6 1.4396 1.7195 4.0554 8 1 0.4243 1.3520 4.2039 9 6 2.3171 1.2828 5.2303 10 6 1.4220 3.2471 3.9722 11 6 0.4624 3.6806 2.8941 12 1 -0.0804 2.9403 2.3249 13 6 0.2772 5.0219 2.6344 14 7 -0.5599 5.4000 1.6932 15 14 1.2165 6.3021 3.6184 16 1 2.5026 6.6025 2.9395 17 1 0.4069 7.5431 3.7164 18 1 1.4867 5.7783 4.9814 19 6 2.3122 -2.2226 1.1364 20 6 3.4801 -1.2375 1.2283 21 1 -0.3634 0.4158 -0.9397 22 1 -0.3633 -1.0217 0.1098 23 1 -0.3633 0.6060 0.8300 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.8361 -0.8456 3.3901 29 1 0.4060 -0.1976 2.5516 30 1 2.9910 1.1967 2.8071 31 1 1.9145 1.6929 6.1565 32 1 2.3296 0.1946 5.2895 33 1 3.3324 1.6504 5.0817 34 1 2.4223 3.6097 3.7354 35 1 1.1033 3.6595 4.9296 36 1 -0.6899 6.3438 1.5102 37 1 2.1033 -2.8390 2.0108 38 1 2.1282 -2.6964 0.1722 39 1 4.0641 -1.0638 0.3245 40 1 4.0397 -1.2058 2.1632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695779147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:41 Heat of formation + Delta-G solvation = 5.140619 kcal Electronic energy + Delta-G solvation = -16590.300769 eV Core-core repulsion = 14212.099049 eV Total energy + Delta-G solvation = -2378.201720 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.91115 -36.11564 -32.84096 -32.47668 -30.40090 -27.72375 -26.54286 -24.97634 -22.62399 -22.12889 -21.77925 -19.73083 -18.03970 -16.55396 -15.59178 -15.03401 -14.58522 -14.28367 -13.76906 -13.18898 -13.08872 -12.64986 -12.35243 -12.21962 -12.17783 -11.75213 -11.63652 -11.38615 -11.34983 -11.19519 -10.75685 -10.66914 -10.50163 -10.20573 -9.98332 -9.82368 -9.59831 -9.51376 -9.36268 -8.96995 -8.37542 -7.43314 -5.86395 -3.79660 3.39426 3.46846 3.49250 3.93778 4.58651 4.71470 4.91818 5.06591 5.27346 5.32851 5.49863 5.63509 5.72516 5.74018 5.80900 5.85656 5.89569 5.95196 5.97508 6.04479 6.23844 6.28435 6.37520 6.38451 6.43422 6.53334 6.57303 6.70474 6.85041 6.85811 6.94437 7.23018 7.36330 7.66600 7.88787 7.96448 8.16058 8.77095 9.25250 9.77260 11.27338 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.008484 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.120681 B = 3299.444876 C = 3884.916425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 C -0.158 4.158 4 C -0.101 4.101 5 C 0.098 3.902 6 N -0.652 5.652 7 C 0.096 3.904 8 H 0.069 0.931 9 C -0.182 4.182 10 C -0.004 4.004 11 C -0.486 4.486 12 H 0.078 0.922 13 C 0.061 3.939 14 N -0.908 5.908 15 Si 0.872 3.128 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.270 1.270 19 C -0.181 4.181 20 C -0.178 4.178 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.122 0.878 28 H 0.015 0.985 29 H 0.076 0.924 30 H 0.330 0.670 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.011 0.989 35 H 0.014 0.986 36 H 0.258 0.742 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -12.595 0.648 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.215 4.215 4 C -0.101 4.101 5 C -0.032 4.032 6 N -0.281 5.281 7 C -0.013 4.013 8 H 0.087 0.913 9 C -0.241 4.241 10 C -0.042 4.042 11 C -0.524 4.524 12 H 0.097 0.903 13 C -0.138 4.138 14 N -0.548 5.548 15 Si 0.701 3.299 16 H -0.207 1.207 17 H -0.218 1.218 18 H -0.195 1.195 19 C -0.218 4.218 20 C -0.215 4.215 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.140 0.860 28 H 0.033 0.967 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.620 -12.135 0.174 13.374 hybrid contribution 1.127 0.212 1.062 1.563 sum 6.746 -11.922 1.236 13.754 Atomic orbital electron populations 1.21788 0.95238 1.00552 1.02424 1.20461 0.95526 0.96903 0.93202 1.22104 0.99361 0.94964 1.05104 1.21575 0.97352 0.93892 0.97288 1.21456 1.00212 0.89511 0.91997 1.60524 1.12867 1.18380 1.36338 1.21589 0.96698 0.97840 0.85215 0.91277 1.22592 1.00904 0.99716 1.00935 1.19609 0.97192 0.90228 0.97142 1.21022 1.22371 0.92352 1.16662 0.90348 1.24998 0.95263 0.98424 0.95128 1.69914 1.36986 1.15743 1.32182 0.86908 0.80140 0.81548 0.81319 1.20670 1.21831 1.19450 1.23006 1.03828 0.92590 1.02421 1.22928 0.91454 1.04546 1.02546 0.93291 0.93973 0.91160 0.93306 0.94615 0.94492 0.86012 0.96653 0.90576 0.85197 0.92612 0.94146 0.93138 0.97105 0.96745 0.93193 0.89421 0.89176 0.89161 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.61 37.16 0.32 -1.93 16 2 C -0.04 -0.65 2.76 -90.62 -0.25 -0.90 16 3 C -0.16 -2.84 8.69 37.16 0.32 -2.52 16 4 C -0.10 -1.41 1.36 -154.51 -0.21 -1.62 16 5 C 0.10 1.50 4.96 -3.82 -0.02 1.48 16 6 N -0.65 -11.39 3.16 -106.72 -0.34 -11.73 16 7 C 0.10 1.81 2.53 -67.71 -0.17 1.64 16 8 H 0.07 1.36 7.77 -51.93 -0.40 0.96 16 9 C -0.18 -2.84 9.16 37.16 0.34 -2.50 16 10 C 0.00 -0.09 3.72 -27.89 -0.10 -0.20 16 11 C -0.49 -13.41 9.39 -34.44 -0.32 -13.73 16 12 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 13 C 0.06 1.77 5.47 -17.82 -0.10 1.68 16 14 N -0.91 -27.99 13.96 55.43 0.77 -27.22 16 15 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 18 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 19 C -0.18 -2.15 9.90 -26.69 -0.26 -2.42 16 20 C -0.18 -2.20 9.97 -26.70 -0.27 -2.46 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.28 7.09 -51.93 -0.37 0.91 16 24 H 0.05 0.70 8.09 -51.92 -0.42 0.28 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.12 2.59 5.80 -51.93 -0.30 2.29 16 28 H 0.02 0.22 7.43 -51.93 -0.39 -0.16 16 29 H 0.08 1.26 6.67 -51.93 -0.35 0.91 16 30 H 0.33 5.48 8.50 -39.29 -0.33 5.14 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.56 7.49 -51.93 -0.39 0.17 16 33 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 35 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 313.18 15.07 4.72 4.72 Total: -1.00 -28.83 313.18 -7.76 -36.59 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.53 Total: 3.86 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -0.72 Total: -23.49 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.44 Total: -38.95 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.83 -7.76 -36.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.736 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds