Wall clock time and date at job start Mon Mar 30 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47036 * 2 1 4 4 C 1.52998 * 109.47670 * 120.00115 * 2 1 3 5 5 C 1.53008 * 115.54663 * 305.97389 * 4 2 1 6 6 N 1.46902 * 109.46694 * 294.01292 * 5 4 2 7 7 C 1.46900 * 110.99543 * 177.94666 * 6 5 4 8 8 H 1.08992 * 109.47206 * 325.00140 * 7 6 5 9 9 C 1.53003 * 109.46814 * 85.00362 * 7 6 5 10 10 C 1.52998 * 109.46757 * 205.00082 * 7 6 5 11 11 C 1.50697 * 109.47614 * 65.00506 * 10 7 6 12 12 H 1.08005 * 119.99200 * 359.97438 * 11 10 7 13 13 C 1.37873 * 120.00687 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00262 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99637 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47082 * 89.99940 * 15 13 11 17 17 H 1.48503 * 109.46931 * 209.99656 * 15 13 11 18 18 H 1.48498 * 109.47051 * 329.99755 * 15 13 11 19 19 C 1.53000 * 117.49832 * 91.63528 * 4 2 1 20 20 C 1.52991 * 117.50180 * 160.29646 * 4 2 1 21 21 H 1.08997 * 109.47343 * 66.13207 * 1 2 3 22 22 H 1.08994 * 109.47092 * 186.13206 * 1 2 3 23 23 H 1.09001 * 109.47017 * 306.13228 * 1 2 3 24 24 H 1.09007 * 109.46969 * 240.00246 * 2 1 3 25 25 H 1.09004 * 109.47174 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46928 * 299.99930 * 3 2 1 27 27 H 1.08991 * 109.47384 * 60.00146 * 3 2 1 28 28 H 1.08997 * 109.46894 * 174.01510 * 5 4 2 29 29 H 1.09000 * 109.46884 * 54.01544 * 5 4 2 30 30 H 1.00897 * 110.99869 * 301.90459 * 6 5 4 31 31 H 1.08999 * 109.46666 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.46811 * 299.99684 * 9 7 6 33 33 H 1.09000 * 109.47114 * 60.00044 * 9 7 6 34 34 H 1.09006 * 109.47391 * 304.99966 * 10 7 6 35 35 H 1.09007 * 109.46847 * 185.00550 * 10 7 6 36 36 H 0.97005 * 119.99852 * 180.02562 * 14 13 11 37 37 H 1.08997 * 117.49681 * 215.00683 * 19 4 2 38 38 H 1.08997 * 117.49873 * 0.02807 * 19 4 2 39 39 H 1.09000 * 117.50212 * 359.97438 * 20 4 2 40 40 H 1.09004 * 117.49790 * 145.00018 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.4956 -0.2000 2.5807 6 7 1.9825 1.1674 2.8071 7 6 1.4396 1.7195 4.0554 8 1 0.4243 1.3520 4.2039 9 6 2.3171 1.2828 5.2303 10 6 1.4220 3.2471 3.9722 11 6 0.4624 3.6806 2.8941 12 1 -0.0804 2.9403 2.3249 13 6 0.2772 5.0219 2.6344 14 7 -0.5599 5.4000 1.6932 15 14 1.2165 6.3021 3.6184 16 1 2.5026 6.6025 2.9395 17 1 0.4069 7.5431 3.7164 18 1 1.4867 5.7783 4.9814 19 6 2.3122 -2.2226 1.1364 20 6 3.4801 -1.2375 1.2283 21 1 -0.3634 0.4158 -0.9397 22 1 -0.3633 -1.0217 0.1098 23 1 -0.3633 0.6060 0.8300 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.8361 -0.8456 3.3901 29 1 0.4060 -0.1976 2.5516 30 1 2.9910 1.1967 2.8071 31 1 1.9145 1.6929 6.1565 32 1 2.3296 0.1946 5.2895 33 1 3.3324 1.6504 5.0817 34 1 2.4223 3.6097 3.7354 35 1 1.1033 3.6595 4.9296 36 1 -0.6899 6.3438 1.5102 37 1 2.1033 -2.8390 2.0108 38 1 2.1282 -2.6964 0.1722 39 1 4.0641 -1.0638 0.3245 40 1 4.0397 -1.2058 2.1632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695779147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:40 Heat of formation + Delta-G solvation = -10.818314 kcal Electronic energy + Delta-G solvation = -16590.992800 eV Core-core repulsion = 14212.099049 eV Total energy + Delta-G solvation = -2378.893751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07683 -37.56827 -34.58352 -34.05864 -31.99361 -29.45127 -27.93586 -26.25566 -24.44976 -23.13208 -23.05417 -21.32871 -19.26489 -18.71306 -16.85015 -16.40431 -16.02020 -15.95493 -15.16482 -14.81987 -14.41243 -14.10404 -13.95812 -13.77513 -13.53187 -13.30909 -13.20724 -12.74598 -12.64784 -12.52352 -12.28259 -12.03457 -11.86761 -11.83599 -11.65420 -11.49455 -11.13918 -11.08679 -10.76315 -10.61530 -10.47463 -8.76811 -8.10854 -6.07946 1.39703 1.40632 1.51160 2.46346 2.89983 3.23535 3.54017 3.82976 3.97745 4.10983 4.20474 4.25620 4.46695 4.52162 4.59974 4.61407 4.66675 4.79490 4.84915 4.97224 5.01663 5.04496 5.10877 5.17552 5.19387 5.24483 5.27014 5.29530 5.35202 5.36928 5.50868 5.59614 5.60066 5.82382 6.11677 6.44471 6.59194 6.83819 7.00480 7.51916 9.06115 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.008484 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.120681 B = 3299.444876 C = 3884.916425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.037 4.037 3 C -0.153 4.153 4 C -0.122 4.122 5 C 0.105 3.895 6 N -0.667 5.667 7 C 0.101 3.899 8 H 0.052 0.948 9 C -0.170 4.170 10 C -0.002 4.002 11 C -0.478 4.478 12 H 0.038 0.962 13 C -0.004 4.004 14 N -0.958 5.958 15 Si 0.940 3.060 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.249 1.249 19 C -0.161 4.161 20 C -0.168 4.168 21 H 0.043 0.957 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.020 0.980 27 H 0.087 0.913 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.337 0.663 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.258 0.742 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.309 -14.239 1.829 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 C -0.210 4.210 4 C -0.122 4.122 5 C -0.024 4.024 6 N -0.297 5.297 7 C -0.009 4.009 8 H 0.070 0.930 9 C -0.229 4.229 10 C -0.040 4.040 11 C -0.516 4.516 12 H 0.057 0.943 13 C -0.198 4.198 14 N -0.601 5.601 15 Si 0.766 3.234 16 H -0.201 1.201 17 H -0.219 1.219 18 H -0.173 1.173 19 C -0.199 4.199 20 C -0.205 4.205 21 H 0.062 0.938 22 H 0.082 0.918 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.754 -13.804 1.373 15.892 hybrid contribution 0.410 0.666 0.626 1.002 sum 8.164 -13.138 1.999 15.597 Atomic orbital electron populations 1.21721 0.96077 1.01038 1.00644 1.20387 0.94770 0.95406 0.94995 1.21988 0.99879 0.96576 1.02546 1.21400 0.99412 0.95862 0.95546 1.21355 0.98963 0.88532 0.93528 1.60377 1.13255 1.20204 1.35889 1.21345 0.97025 0.94979 0.87553 0.92981 1.22429 1.00330 1.01069 0.99081 1.19572 0.95644 0.93642 0.95143 1.21266 1.22103 0.91509 1.16752 0.94320 1.25886 0.96508 1.00992 0.96437 1.70088 1.39350 1.16087 1.34546 0.85814 0.78577 0.78443 0.80605 1.20062 1.21935 1.17287 1.23089 1.02244 0.90949 1.03611 1.22992 0.90616 1.03654 1.03280 0.93752 0.91826 0.94666 0.91507 0.93566 0.96103 0.89455 0.94885 0.92769 0.84487 0.92205 0.92075 0.92215 0.96828 0.96650 0.93366 0.88195 0.88032 0.88657 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 8.61 71.98 0.62 -3.81 16 2 C -0.04 -1.12 2.76 -10.79 -0.03 -1.15 16 3 C -0.15 -5.59 8.69 71.98 0.63 -4.96 16 4 C -0.12 -3.17 1.36 -52.18 -0.07 -3.24 16 5 C 0.11 3.12 4.96 86.31 0.43 3.55 16 6 N -0.67 -23.06 3.16 -491.56 -1.55 -24.61 16 7 C 0.10 3.74 2.53 44.92 0.11 3.85 16 8 H 0.05 2.08 7.77 -2.39 -0.02 2.07 16 9 C -0.17 -4.82 9.16 71.98 0.66 -4.16 16 10 C 0.00 -0.10 3.72 29.85 0.11 0.01 16 11 C -0.48 -27.23 9.39 25.60 0.24 -26.99 16 12 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 13 C 0.00 -0.22 5.47 84.65 0.46 0.24 16 14 N -0.96 -61.38 13.96 21.45 0.30 -61.09 16 15 Si 0.94 45.54 27.47 68.60 1.88 47.42 16 16 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 17 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 18 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 19 C -0.16 -3.25 9.90 30.62 0.30 -2.95 16 20 C -0.17 -3.59 9.97 30.61 0.31 -3.29 16 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.03 1.36 7.09 -2.39 -0.02 1.34 16 24 H 0.07 1.78 8.09 -2.38 -0.02 1.76 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 3.88 5.80 -2.39 -0.01 3.86 16 28 H 0.03 0.86 7.43 -2.39 -0.02 0.85 16 29 H 0.05 1.83 6.67 -2.39 -0.02 1.81 16 30 H 0.34 10.69 8.50 -89.70 -0.76 9.93 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.49 7.49 -2.39 -0.02 1.47 16 33 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 34 H 0.01 0.61 7.57 -2.38 -0.02 0.60 16 35 H 0.02 0.70 7.20 -2.38 -0.02 0.69 16 36 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -64.27 313.18 4.56 -59.72 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.16 Total: 21.47 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 3.77 Total: -42.90 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.25 Total: -85.70 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -64.27 4.56 -59.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.898 kcal (2) G-P(sol) polarization free energy of solvation -64.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds