Wall clock time and date at job start Mon Mar 30 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46999 * 2 1 4 4 N 1.46898 * 109.46954 * 119.99869 * 2 1 3 5 5 C 1.46895 * 110.99930 * 188.03296 * 4 2 1 6 6 C 1.46899 * 111.00230 * 311.99114 * 4 2 1 7 7 H 1.08996 * 109.46960 * 44.95614 * 6 4 2 8 8 C 1.53001 * 109.47394 * 164.95469 * 6 4 2 9 9 C 1.52998 * 109.46833 * 284.95417 * 6 4 2 10 10 C 1.50702 * 109.47161 * 66.93306 * 9 6 4 11 11 H 1.07997 * 119.99943 * 4.92985 * 10 9 6 12 12 C 1.37883 * 119.99540 * 184.92801 * 10 9 6 13 13 N 1.31515 * 119.99519 * 179.97438 * 12 10 9 14 14 Si 1.86787 * 120.00363 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47620 * 90.00124 * 14 12 10 16 16 H 1.48506 * 109.47266 * 210.00024 * 14 12 10 17 17 H 1.48500 * 109.47448 * 330.00028 * 14 12 10 18 18 C 1.53002 * 109.47120 * 240.00051 * 2 1 3 19 19 C 1.53006 * 115.55883 * 281.94104 * 18 2 1 20 20 C 1.52996 * 117.49938 * 67.63120 * 18 2 1 21 21 C 1.52994 * 60.02956 * 107.50175 * 20 18 2 22 22 H 1.09007 * 109.46944 * 67.60928 * 1 2 3 23 23 H 1.08996 * 109.46906 * 187.60936 * 1 2 3 24 24 H 1.09004 * 109.47132 * 307.61067 * 1 2 3 25 25 H 1.09003 * 109.47064 * 61.30804 * 5 4 2 26 26 H 1.09007 * 109.47388 * 181.30679 * 5 4 2 27 27 H 1.08994 * 109.47430 * 301.30826 * 5 4 2 28 28 H 1.08994 * 109.47226 * 185.29719 * 8 6 4 29 29 H 1.09006 * 109.46939 * 305.29861 * 8 6 4 30 30 H 1.09001 * 109.46967 * 65.29438 * 8 6 4 31 31 H 1.09004 * 109.46984 * 186.93421 * 9 6 4 32 32 H 1.09003 * 109.47449 * 306.92762 * 9 6 4 33 33 H 0.96996 * 120.00279 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.46795 * 200.17131 * 19 18 2 35 35 H 1.08998 * 109.47309 * 320.17597 * 19 18 2 36 36 H 1.09002 * 109.46732 * 80.17591 * 19 18 2 37 37 H 1.08997 * 117.49790 * 359.97438 * 20 18 2 38 38 H 1.09004 * 117.49427 * 215.00381 * 20 18 2 39 39 H 1.09004 * 117.49603 * 107.48290 * 21 20 18 40 40 H 1.09000 * 117.49532 * 252.46667 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4754 -0.5483 1.3331 6 6 1.3301 -0.2108 2.4038 7 1 0.2601 -0.1436 2.2074 8 6 1.5767 -1.1856 3.5570 9 6 1.8674 1.1713 2.7806 10 6 1.4752 2.1687 1.7212 11 1 0.8338 1.8669 0.9064 12 6 1.9352 3.4666 1.7922 13 7 1.5933 4.3369 0.8674 14 14 3.0439 3.9887 3.2019 15 1 4.4630 3.7695 2.8231 16 1 2.8267 5.4282 3.4955 17 1 2.7236 3.1837 4.4080 18 6 2.0401 -0.7212 -1.2493 19 6 1.9908 -2.2496 -1.1955 20 6 1.7886 -0.0535 -2.6027 21 6 3.2001 -0.0780 -2.0130 22 1 -0.3633 0.3915 -0.9503 23 1 -0.3633 -1.0186 0.1361 24 1 -0.3633 0.6272 0.8141 25 1 3.7282 0.5071 1.4346 26 1 3.8146 -1.0897 2.2164 27 1 3.9637 -0.9554 0.4477 28 1 0.9901 -0.8796 4.4231 29 1 1.2801 -2.1898 3.2536 30 1 2.6356 -1.1821 3.8156 31 1 1.4473 1.4754 3.7394 32 1 2.9540 1.1304 2.8568 33 1 1.9172 5.2498 0.9171 34 1 2.6773 -2.6614 -1.9353 35 1 2.2824 -2.5877 -0.2012 36 1 0.9776 -2.5882 -1.4118 37 1 1.2595 0.8994 -2.6031 38 1 1.5877 -0.7030 -3.4547 39 1 3.9279 -0.7439 -2.4770 40 1 3.6002 0.8591 -1.6260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695787567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:52 Heat of formation + Delta-G solvation = 32.614165 kcal Electronic energy + Delta-G solvation = -17226.179311 eV Core-core repulsion = 14849.168933 eV Total energy + Delta-G solvation = -2377.010377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.10163 -36.50106 -32.56730 -31.23598 -29.72306 -28.01582 -27.76190 -24.48796 -23.16690 -22.07095 -21.80438 -18.64479 -18.04764 -16.64296 -15.65292 -14.95379 -14.43081 -14.22313 -13.62508 -13.05834 -12.72574 -12.69130 -12.28347 -12.00183 -11.82997 -11.66983 -11.59587 -11.36806 -11.19274 -10.99098 -10.82937 -10.54115 -10.49164 -10.18692 -10.16661 -9.67224 -9.57714 -9.42407 -9.09386 -8.84786 -8.53291 -7.18051 -6.05613 -4.02243 3.26972 3.35997 3.40241 4.25560 4.43542 4.79373 5.25102 5.29998 5.42956 5.52514 5.67212 5.79827 5.97040 6.07803 6.08768 6.16006 6.21442 6.23239 6.32258 6.37222 6.39687 6.40933 6.50051 6.57645 6.65002 6.65938 6.71793 6.78238 6.84566 6.94339 6.99271 7.19918 7.33191 7.34164 7.76757 8.06224 8.10311 8.50943 8.99044 9.56911 11.04907 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.011237 C = 0.009263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.484472 B = 2491.249564 C = 3022.044456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.102 3.898 3 H 0.099 0.901 4 N -0.519 5.519 5 C 0.022 3.978 6 C 0.079 3.921 7 H 0.080 0.920 8 C -0.139 4.139 9 C -0.045 4.045 10 C -0.532 4.532 11 H 0.099 0.901 12 C 0.070 3.930 13 N -0.900 5.900 14 Si 0.871 3.129 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.267 1.267 18 C -0.106 4.106 19 C -0.104 4.104 20 C -0.179 4.179 21 C -0.181 4.181 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.013 0.987 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 -10.270 -1.895 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.006 4.006 3 H 0.117 0.883 4 N -0.243 5.243 5 C -0.127 4.127 6 C -0.029 4.029 7 H 0.098 0.902 8 C -0.197 4.197 9 C -0.084 4.084 10 C -0.569 4.569 11 H 0.117 0.883 12 C -0.131 4.131 13 N -0.539 5.539 14 Si 0.699 3.301 15 H -0.205 1.205 16 H -0.216 1.216 17 H -0.192 1.192 18 C -0.106 4.106 19 C -0.162 4.162 20 C -0.217 4.217 21 C -0.218 4.218 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.246 -10.587 -1.992 10.844 hybrid contribution 0.921 1.425 0.768 1.863 sum 2.166 -9.161 -1.223 9.493 Atomic orbital electron populations 1.21931 0.95479 1.00762 1.01796 1.21578 0.94453 0.97951 0.86573 0.88341 1.62349 1.04002 1.55565 1.02351 1.22338 0.89568 1.00551 1.00247 1.21713 0.99018 0.93271 0.88918 0.90187 1.21828 1.00707 0.99297 0.97835 1.20277 0.96501 0.93985 0.97609 1.21637 1.31310 0.93717 1.10214 0.88312 1.25010 0.95966 0.96684 0.95442 1.69899 1.45576 1.04344 1.34089 0.86904 0.81423 0.77652 0.84099 1.20550 1.21586 1.19207 1.21571 1.01576 0.94855 0.92631 1.21213 1.00213 0.92519 1.02222 1.22943 0.99638 1.02595 0.96476 1.23098 0.91251 1.02800 1.04661 0.93309 0.93521 0.90913 0.94054 0.93043 0.92636 0.93306 0.93096 0.93631 0.96849 0.96402 0.92842 0.94374 0.90509 0.93326 0.88844 0.89737 0.89875 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 7.53 37.16 0.28 -2.38 16 2 C 0.10 1.97 1.31 -67.71 -0.09 1.88 16 3 H 0.10 2.33 4.97 -51.93 -0.26 2.07 16 4 N -0.52 -9.65 3.34 -226.91 -0.76 -10.40 16 5 C 0.02 0.39 8.26 60.06 0.50 0.89 16 6 C 0.08 1.54 2.35 -67.71 -0.16 1.38 16 7 H 0.08 1.61 5.46 -51.93 -0.28 1.33 16 8 C -0.14 -2.31 9.11 37.16 0.34 -1.97 16 9 C -0.05 -1.05 3.04 -27.88 -0.08 -1.13 16 10 C -0.53 -14.04 7.37 -34.44 -0.25 -14.30 16 11 H 0.10 2.68 3.55 -52.49 -0.19 2.49 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 14 Si 0.87 21.56 27.37 -169.99 -4.65 16.91 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.27 -6.46 6.69 56.52 0.38 -6.09 16 18 C -0.11 -1.76 0.90 -154.47 -0.14 -1.89 16 19 C -0.10 -1.54 9.62 37.16 0.36 -1.18 16 20 C -0.18 -2.83 9.48 -26.74 -0.25 -3.08 16 21 C -0.18 -2.92 9.29 -26.70 -0.25 -3.17 16 22 H 0.05 0.88 7.63 -51.93 -0.40 0.48 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.50 4.98 -51.93 -0.26 1.24 16 25 H 0.04 0.87 6.15 -51.93 -0.32 0.55 16 26 H 0.05 0.86 6.68 -51.92 -0.35 0.52 16 27 H 0.05 0.94 6.80 -51.93 -0.35 0.59 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.74 6.90 -51.93 -0.36 0.38 16 31 H 0.01 0.32 7.54 -51.93 -0.39 -0.07 16 32 H 0.02 0.42 5.10 -51.93 -0.26 0.15 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.04 0.50 7.95 -51.93 -0.41 0.09 16 35 H 0.08 1.19 6.91 -51.93 -0.36 0.83 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.59 8.07 -51.93 -0.42 1.17 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 LS Contribution 293.20 15.07 4.42 4.42 Total: -1.00 -27.66 293.20 -6.79 -34.45 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.72 Total: 3.66 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 0.15 Total: -23.09 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.02 Total: -36.35 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.65 Total: 16.91 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.66 -6.79 -34.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.067 kcal (2) G-P(sol) polarization free energy of solvation -27.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds