Wall clock time and date at job start Mon Mar 30 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46999 * 2 1 4 4 N 1.46898 * 109.46954 * 119.99869 * 2 1 3 5 5 C 1.46895 * 110.99930 * 188.03296 * 4 2 1 6 6 C 1.46899 * 111.00230 * 311.99114 * 4 2 1 7 7 H 1.08996 * 109.46960 * 44.95614 * 6 4 2 8 8 C 1.53001 * 109.47394 * 164.95469 * 6 4 2 9 9 C 1.52998 * 109.46833 * 284.95417 * 6 4 2 10 10 C 1.50702 * 109.47161 * 66.93306 * 9 6 4 11 11 H 1.07997 * 119.99943 * 4.92985 * 10 9 6 12 12 C 1.37883 * 119.99540 * 184.92801 * 10 9 6 13 13 N 1.31515 * 119.99519 * 179.97438 * 12 10 9 14 14 Si 1.86787 * 120.00363 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47620 * 90.00124 * 14 12 10 16 16 H 1.48506 * 109.47266 * 210.00024 * 14 12 10 17 17 H 1.48500 * 109.47448 * 330.00028 * 14 12 10 18 18 C 1.53002 * 109.47120 * 240.00051 * 2 1 3 19 19 C 1.53006 * 115.55883 * 281.94104 * 18 2 1 20 20 C 1.52996 * 117.49938 * 67.63120 * 18 2 1 21 21 C 1.52994 * 60.02956 * 107.50175 * 20 18 2 22 22 H 1.09007 * 109.46944 * 67.60928 * 1 2 3 23 23 H 1.08996 * 109.46906 * 187.60936 * 1 2 3 24 24 H 1.09004 * 109.47132 * 307.61067 * 1 2 3 25 25 H 1.09003 * 109.47064 * 61.30804 * 5 4 2 26 26 H 1.09007 * 109.47388 * 181.30679 * 5 4 2 27 27 H 1.08994 * 109.47430 * 301.30826 * 5 4 2 28 28 H 1.08994 * 109.47226 * 185.29719 * 8 6 4 29 29 H 1.09006 * 109.46939 * 305.29861 * 8 6 4 30 30 H 1.09001 * 109.46967 * 65.29438 * 8 6 4 31 31 H 1.09004 * 109.46984 * 186.93421 * 9 6 4 32 32 H 1.09003 * 109.47449 * 306.92762 * 9 6 4 33 33 H 0.96996 * 120.00279 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.46795 * 200.17131 * 19 18 2 35 35 H 1.08998 * 109.47309 * 320.17597 * 19 18 2 36 36 H 1.09002 * 109.46732 * 80.17591 * 19 18 2 37 37 H 1.08997 * 117.49790 * 359.97438 * 20 18 2 38 38 H 1.09004 * 117.49427 * 215.00381 * 20 18 2 39 39 H 1.09004 * 117.49603 * 107.48290 * 21 20 18 40 40 H 1.09000 * 117.49532 * 252.46667 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4754 -0.5483 1.3331 6 6 1.3301 -0.2108 2.4038 7 1 0.2601 -0.1436 2.2074 8 6 1.5767 -1.1856 3.5570 9 6 1.8674 1.1713 2.7806 10 6 1.4752 2.1687 1.7212 11 1 0.8338 1.8669 0.9064 12 6 1.9352 3.4666 1.7922 13 7 1.5933 4.3369 0.8674 14 14 3.0439 3.9887 3.2019 15 1 4.4630 3.7695 2.8231 16 1 2.8267 5.4282 3.4955 17 1 2.7236 3.1837 4.4080 18 6 2.0401 -0.7212 -1.2493 19 6 1.9908 -2.2496 -1.1955 20 6 1.7886 -0.0535 -2.6027 21 6 3.2001 -0.0780 -2.0130 22 1 -0.3633 0.3915 -0.9503 23 1 -0.3633 -1.0186 0.1361 24 1 -0.3633 0.6272 0.8141 25 1 3.7282 0.5071 1.4346 26 1 3.8146 -1.0897 2.2164 27 1 3.9637 -0.9554 0.4477 28 1 0.9901 -0.8796 4.4231 29 1 1.2801 -2.1898 3.2536 30 1 2.6356 -1.1821 3.8156 31 1 1.4473 1.4754 3.7394 32 1 2.9540 1.1304 2.8568 33 1 1.9172 5.2498 0.9171 34 1 2.6773 -2.6614 -1.9353 35 1 2.2824 -2.5877 -0.2012 36 1 0.9776 -2.5882 -1.4118 37 1 1.2595 0.8994 -2.6031 38 1 1.5877 -0.7030 -3.4547 39 1 3.9279 -0.7439 -2.4770 40 1 3.6002 0.8591 -1.6260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695787567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:52 Heat of formation + Delta-G solvation = 17.033846 kcal Electronic energy + Delta-G solvation = -17226.854924 eV Core-core repulsion = 14849.168933 eV Total energy + Delta-G solvation = -2377.685991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60399 -37.95142 -34.63940 -32.78347 -31.35097 -29.70491 -29.06182 -25.99237 -24.80105 -23.83016 -23.13397 -20.19000 -19.73255 -18.48108 -17.19191 -16.48595 -16.32586 -15.83459 -15.08886 -14.62278 -14.51151 -13.97797 -13.91290 -13.70419 -13.28317 -13.21741 -13.01492 -12.88185 -12.76526 -12.46462 -12.30485 -12.14825 -12.12573 -11.85321 -11.69191 -11.56764 -11.20023 -10.93436 -10.76478 -10.65315 -10.32166 -8.83206 -8.21032 -6.19826 1.27942 1.31885 1.41168 2.35978 2.92148 3.09904 3.34032 3.94885 4.10480 4.17169 4.30702 4.32015 4.57556 4.62643 4.72560 4.74952 4.80630 4.81423 4.89404 4.99935 5.03325 5.04668 5.10859 5.14208 5.18684 5.21182 5.25636 5.33571 5.37395 5.44331 5.51484 5.57736 5.64549 5.71715 5.75835 6.37793 6.50981 6.51386 6.88013 7.40874 8.91296 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.011237 C = 0.009263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.484472 B = 2491.249564 C = 3022.044456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.106 3.894 3 H 0.047 0.953 4 N -0.504 5.504 5 C 0.026 3.974 6 C 0.078 3.922 7 H 0.073 0.927 8 C -0.130 4.130 9 C -0.043 4.043 10 C -0.521 4.521 11 H 0.084 0.916 12 C 0.011 3.989 13 N -0.947 5.947 14 Si 0.926 3.074 15 H -0.276 1.276 16 H -0.291 1.291 17 H -0.255 1.255 18 C -0.110 4.110 19 C -0.096 4.096 20 C -0.174 4.174 21 C -0.181 4.181 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.007 0.993 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.008 0.992 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -12.920 -1.470 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.002 4.002 3 H 0.065 0.935 4 N -0.227 5.227 5 C -0.122 4.122 6 C -0.030 4.030 7 H 0.091 0.909 8 C -0.188 4.188 9 C -0.081 4.081 10 C -0.559 4.559 11 H 0.101 0.899 12 C -0.185 4.185 13 N -0.588 5.588 14 Si 0.752 3.248 15 H -0.202 1.202 16 H -0.217 1.217 17 H -0.178 1.178 18 C -0.110 4.110 19 C -0.153 4.153 20 C -0.211 4.211 21 C -0.218 4.218 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.025 0.975 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.850 -13.257 -1.550 13.475 hybrid contribution 0.694 2.240 0.580 2.416 sum 2.543 -11.017 -0.970 11.348 Atomic orbital electron populations 1.21815 0.95225 1.01300 1.00722 1.21343 0.94649 0.95746 0.88451 0.93534 1.62464 1.04182 1.54388 1.01714 1.22333 0.89291 0.98684 1.01908 1.21721 0.98533 0.92219 0.90525 0.90935 1.21744 1.01287 0.99184 0.96591 1.20272 0.96428 0.95413 0.96035 1.22020 1.29502 0.94184 1.10168 0.89860 1.25755 0.97846 0.97156 0.97756 1.70034 1.47842 1.04664 1.36303 0.86014 0.79763 0.77219 0.81798 1.20213 1.21717 1.17845 1.21536 1.01801 0.96230 0.91457 1.21161 1.01320 0.90202 1.02611 1.22973 0.99001 1.02033 0.97104 1.23082 0.91885 1.02032 1.04765 0.93381 0.91428 0.93510 0.97470 0.91039 0.91222 0.92401 0.91206 0.93131 0.97336 0.96470 0.93123 0.92335 0.91018 0.92511 0.91105 0.86840 0.87166 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 7.53 71.98 0.54 -4.45 16 2 C 0.11 4.10 1.31 44.92 0.06 4.15 16 3 H 0.05 2.31 4.97 -2.39 -0.01 2.30 16 4 N -0.50 -18.06 3.34 -871.81 -2.91 -20.98 16 5 C 0.03 0.92 8.26 127.69 1.05 1.98 16 6 C 0.08 2.97 2.35 44.92 0.11 3.08 16 7 H 0.07 2.87 5.46 -2.39 -0.01 2.86 16 8 C -0.13 -3.94 9.11 71.98 0.66 -3.28 16 9 C -0.04 -1.97 3.04 29.85 0.09 -1.88 16 10 C -0.52 -28.32 7.37 25.60 0.19 -28.13 16 11 H 0.08 4.73 3.55 -2.91 -0.01 4.72 16 12 C 0.01 0.65 5.47 84.66 0.46 1.11 16 13 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 14 Si 0.93 45.08 27.37 68.60 1.88 46.96 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 16 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 17 H -0.25 -11.73 6.69 99.48 0.67 -11.07 16 18 C -0.11 -3.48 0.90 -52.16 -0.05 -3.52 16 19 C -0.10 -2.48 9.62 71.98 0.69 -1.79 16 20 C -0.17 -5.29 9.48 30.59 0.29 -5.00 16 21 C -0.18 -5.65 9.29 30.61 0.28 -5.37 16 22 H 0.05 1.75 7.63 -2.38 -0.02 1.74 16 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.05 1.98 4.98 -2.38 -0.01 1.96 16 25 H 0.01 0.29 6.15 -2.39 -0.01 0.27 16 26 H 0.07 2.21 6.68 -2.38 -0.02 2.19 16 27 H 0.07 2.23 6.80 -2.39 -0.02 2.21 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.05 1.47 6.90 -2.39 -0.02 1.46 16 31 H 0.01 0.39 7.54 -2.39 -0.02 0.37 16 32 H 0.02 0.79 5.10 -2.39 -0.01 0.78 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.06 1.29 7.95 -2.39 -0.02 1.27 16 35 H 0.07 1.94 6.91 -2.39 -0.02 1.93 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 38 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 39 H 0.11 2.84 8.08 -2.39 -0.02 2.82 16 40 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 Total: -1.00 -60.88 293.20 4.60 -56.27 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.96 Total: 19.06 kcal Atomic # 6 Polarization: -47.47 SS G_CDS: 4.38 Total: -43.09 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.61 Total: -79.20 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -60.88 4.60 -56.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.308 kcal (2) G-P(sol) polarization free energy of solvation -60.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds