Wall clock time and date at job start Mon Mar 30 2020 02:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 C 1.52994 * 109.46957 * 119.99631 * 2 1 3 5 5 H 1.09003 * 109.46962 * 60.00263 * 4 2 1 6 6 N 1.46901 * 109.47285 * 180.02562 * 4 2 1 7 7 C 1.46893 * 111.00282 * 226.45049 * 6 4 2 8 8 H 1.09000 * 109.47585 * 321.08083 * 7 6 4 9 9 C 1.53002 * 109.47132 * 81.08047 * 7 6 4 10 10 C 1.53001 * 109.47218 * 201.07822 * 7 6 4 11 11 C 1.50701 * 109.46834 * 65.00118 * 10 7 6 12 12 H 1.08001 * 120.00141 * 0.02562 * 11 10 7 13 13 C 1.37879 * 120.00141 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99818 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00262 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47341 * 59.99444 * 15 13 11 17 17 H 1.48497 * 109.47319 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46725 * 299.99625 * 15 13 11 19 19 C 1.53003 * 109.47564 * 300.00468 * 4 2 1 20 20 C 1.52997 * 117.50134 * 177.61808 * 19 4 2 21 21 C 1.53003 * 60.02986 * 252.49780 * 20 19 4 22 22 H 1.08995 * 109.47453 * 299.99929 * 1 2 3 23 23 H 1.09000 * 109.47073 * 60.00333 * 1 2 3 24 24 H 1.08996 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47044 * 240.00284 * 2 1 3 26 26 H 1.09004 * 109.47285 * 300.00139 * 3 2 1 27 27 H 1.09002 * 109.47227 * 59.99532 * 3 2 1 28 28 H 1.08991 * 109.47310 * 179.97438 * 3 2 1 29 29 H 1.00902 * 110.99669 * 102.49645 * 6 4 2 30 30 H 1.09000 * 109.47157 * 179.97438 * 9 7 6 31 31 H 1.08993 * 109.47154 * 300.00235 * 9 7 6 32 32 H 1.09000 * 109.47233 * 59.99976 * 9 7 6 33 33 H 1.08996 * 109.47215 * 185.00202 * 10 7 6 34 34 H 1.09003 * 109.47210 * 305.00186 * 10 7 6 35 35 H 0.96998 * 120.00153 * 179.97438 * 14 13 11 36 36 H 1.08999 * 115.55794 * 323.30416 * 19 4 2 37 37 H 1.09002 * 117.49655 * 359.97438 * 20 19 4 38 38 H 1.08997 * 117.50084 * 144.99704 * 20 19 4 39 39 H 1.09001 * 117.50156 * 107.50296 * 21 20 19 40 40 H 1.08997 * 117.49797 * 252.52386 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.6767 -1.7488 1.2493 6 7 3.5091 -0.7207 1.2496 7 6 4.0359 -2.0537 1.5709 8 1 3.4197 -2.5111 2.3450 9 6 4.0105 -2.9283 0.3158 10 6 5.4751 -1.9256 2.0742 11 6 5.4861 -1.1679 3.3769 12 1 4.5593 -0.8136 3.8033 13 6 6.6794 -0.9270 4.0242 14 7 7.8080 -1.3589 3.5051 15 14 6.6930 0.0115 5.6393 16 1 5.8811 -0.7207 6.6442 17 1 8.0898 0.1359 6.1277 18 1 6.1188 1.3650 5.4300 19 6 1.5300 0.0001 2.4985 20 6 1.8876 -0.6034 3.8582 21 6 0.4547 -0.7025 3.3311 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 3.8702 -0.0260 1.8862 30 1 4.4019 -3.9173 0.5541 31 1 2.9853 -3.0195 -0.0428 32 1 4.6268 -2.4709 -0.4583 33 1 5.8959 -2.9192 2.2282 34 1 6.0715 -1.3887 1.3365 35 1 8.6475 -1.1892 3.9604 36 1 1.4813 1.0866 2.4273 37 1 2.4859 -1.5145 3.8627 38 1 2.0745 0.0861 4.6814 39 1 0.1106 -1.6785 2.9889 40 1 -0.3010 -0.0778 3.8073 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695792676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:27 Heat of formation + Delta-G solvation = -3.879532 kcal Electronic energy + Delta-G solvation = -16628.184524 eV Core-core repulsion = 14249.591662 eV Total energy + Delta-G solvation = -2378.592863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.86115 -35.35421 -34.48515 -32.42065 -29.61599 -27.37836 -26.81950 -24.82290 -22.87761 -21.98201 -21.55304 -19.40254 -18.54259 -16.31866 -15.57358 -15.38249 -14.68382 -14.44611 -13.75296 -13.42162 -13.11943 -12.82448 -12.37906 -11.92653 -11.77847 -11.62979 -11.48871 -11.21599 -11.17411 -11.13910 -10.83560 -10.63340 -10.55815 -10.43190 -10.31955 -9.97849 -9.89239 -9.65569 -9.08216 -8.99939 -8.35251 -7.49524 -5.98540 -4.00611 3.32313 3.37565 3.39064 4.10909 4.46067 4.84449 4.95011 5.19222 5.34943 5.38609 5.39777 5.47071 5.63378 5.68656 5.86104 5.89361 5.94161 5.99294 6.06751 6.15858 6.23212 6.26363 6.28646 6.36839 6.42099 6.48583 6.59503 6.63159 6.73498 6.76845 6.97670 7.02051 7.61474 7.70954 8.02370 8.15135 8.38709 8.45388 9.06097 9.63135 11.12676 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.008538 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.737557 B = 3278.501748 C = 3729.215996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.142 4.142 4 C 0.122 3.878 5 H 0.060 0.940 6 N -0.673 5.673 7 C 0.089 3.911 8 H 0.026 0.974 9 C -0.136 4.136 10 C 0.022 3.978 11 C -0.521 4.521 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.886 3.114 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.170 4.170 20 C -0.173 4.173 21 C -0.184 4.184 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.357 0.643 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.018 0.982 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.183 2.193 -4.180 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 C -0.199 4.199 4 C 0.011 3.989 5 H 0.078 0.922 6 N -0.306 5.306 7 C -0.021 4.021 8 H 0.044 0.956 9 C -0.194 4.194 10 C -0.015 4.015 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.714 3.286 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.189 4.189 20 C -0.210 4.210 21 C -0.222 4.222 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.179 0.821 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.899 2.092 -4.828 13.931 hybrid contribution -0.092 0.476 1.989 2.047 sum -12.991 2.568 -2.839 13.543 Atomic orbital electron populations 1.21842 0.96229 1.01052 1.01158 1.21039 0.93845 0.96673 0.98186 1.21790 1.02482 0.95547 1.00122 1.21173 0.89617 0.97038 0.91065 0.92151 1.60634 1.03992 1.07875 1.58104 1.21658 0.98780 0.88033 0.93600 0.95616 1.21826 0.99768 0.98812 0.99028 1.19246 0.89307 0.97221 0.95764 1.21241 0.92774 1.35476 1.06462 0.92358 1.24978 0.95785 0.95882 0.97459 1.69954 0.97787 1.46273 1.39204 0.86753 0.76937 0.80570 0.84304 1.20413 1.21398 1.20243 1.23062 1.03243 0.99566 0.93041 1.23002 0.97276 1.03887 0.96875 1.22939 0.92354 1.01801 1.05091 0.92626 0.93410 0.93382 0.91244 0.94020 0.93350 0.91293 0.82134 0.93507 0.94615 0.92665 0.96344 0.95706 0.93017 0.87832 0.87896 0.89260 0.89398 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.95 37.16 0.33 -1.35 16 2 C -0.08 -1.07 2.94 -90.62 -0.27 -1.34 16 3 C -0.14 -1.92 8.79 37.16 0.33 -1.59 16 4 C 0.12 1.89 1.82 -67.71 -0.12 1.77 16 5 H 0.06 0.98 6.77 -51.93 -0.35 0.63 16 6 N -0.67 -12.58 5.33 -99.74 -0.53 -13.11 16 7 C 0.09 1.82 2.35 -67.71 -0.16 1.66 16 8 H 0.03 0.54 6.46 -51.93 -0.34 0.21 16 9 C -0.14 -2.47 9.35 37.16 0.35 -2.12 16 10 C 0.02 0.55 4.60 -27.88 -0.13 0.43 16 11 C -0.52 -14.02 8.14 -34.44 -0.28 -14.30 16 12 H 0.06 1.49 6.04 -52.49 -0.32 1.18 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 15 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.17 -2.51 3.44 -90.58 -0.31 -2.82 16 20 C -0.17 -2.78 9.40 -26.73 -0.25 -3.03 16 21 C -0.18 -2.47 10.07 -26.69 -0.27 -2.73 16 22 H 0.05 0.64 7.12 -51.93 -0.37 0.27 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.63 6.17 -51.93 -0.32 0.31 16 28 H 0.07 1.05 7.60 -51.93 -0.39 0.66 16 29 H 0.36 7.37 6.64 -39.29 -0.26 7.11 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.58 7.53 -51.93 -0.39 0.19 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.10 1.50 6.11 -51.93 -0.32 1.18 16 37 H 0.10 1.89 6.20 -51.93 -0.32 1.57 16 38 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 309.22 15.07 4.66 4.66 Total: -1.00 -27.70 309.22 -8.20 -35.90 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.16 Total: 5.86 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -0.88 Total: -23.85 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.20 Total: -38.94 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.70 -8.20 -35.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.017 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds