Wall clock time and date at job start Mon Mar 30 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47243 * 2 1 4 4 C 1.53001 * 109.47002 * 120.00004 * 2 1 3 5 5 H 1.09002 * 109.46949 * 295.66391 * 4 2 1 6 6 N 1.46895 * 109.47250 * 175.66063 * 4 2 1 7 7 C 1.46901 * 110.99881 * 101.10094 * 6 4 2 8 8 H 1.09003 * 109.46932 * 316.44102 * 7 6 4 9 9 C 1.53003 * 109.47005 * 76.44231 * 7 6 4 10 10 C 1.53006 * 109.47367 * 196.43795 * 7 6 4 11 11 C 1.50703 * 109.46653 * 65.22061 * 10 7 6 12 12 H 1.08000 * 119.99931 * 359.70614 * 11 10 7 13 13 C 1.37878 * 119.99998 * 179.70780 * 11 10 7 14 14 N 1.31512 * 120.00062 * 179.72434 * 13 11 10 15 15 Si 1.86803 * 119.99673 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.46882 * 90.00090 * 15 13 11 17 17 H 1.48501 * 109.47186 * 210.00003 * 15 13 11 18 18 H 1.48495 * 109.47406 * 330.00188 * 15 13 11 19 19 C 1.53002 * 109.47187 * 55.66275 * 4 2 1 20 20 C 1.53003 * 117.49922 * 253.32936 * 19 4 2 21 21 C 1.52999 * 117.49900 * 184.67266 * 19 4 2 22 22 H 1.08993 * 109.46875 * 299.99985 * 1 2 3 23 23 H 1.08996 * 109.46785 * 60.00145 * 1 2 3 24 24 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47134 * 239.99651 * 2 1 3 26 26 H 1.09002 * 109.47384 * 185.99502 * 3 2 1 27 27 H 1.08995 * 109.47197 * 305.99381 * 3 2 1 28 28 H 1.09005 * 109.47078 * 65.99591 * 3 2 1 29 29 H 1.00902 * 111.00041 * 337.14836 * 6 4 2 30 30 H 1.08996 * 109.47551 * 54.80800 * 9 7 6 31 31 H 1.09000 * 109.47079 * 174.81236 * 9 7 6 32 32 H 1.08999 * 109.47035 * 294.80774 * 9 7 6 33 33 H 1.08996 * 109.46780 * 305.22208 * 10 7 6 34 34 H 1.08997 * 109.47274 * 185.22064 * 10 7 6 35 35 H 0.97001 * 119.99720 * 180.02562 * 14 13 11 36 36 H 1.08999 * 115.55288 * 38.99738 * 19 4 2 37 37 H 1.09004 * 117.49618 * 0.02562 * 20 19 4 38 38 H 1.08999 * 117.49729 * 145.01976 * 20 19 4 39 39 H 1.09006 * 117.50011 * 214.98107 * 21 19 4 40 40 H 1.08998 * 117.49834 * 359.97270 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7415 -0.1645 2.1375 6 7 3.5052 -0.8127 1.1981 7 6 4.1265 0.2074 2.0532 8 1 3.6145 1.1595 1.9135 9 6 4.0177 -0.2201 3.5183 10 6 5.6011 0.3609 1.6750 11 6 5.7061 0.9045 0.2734 12 1 4.8108 1.1146 -0.2929 13 6 6.9453 1.1337 -0.2862 14 7 7.0370 1.6030 -1.5113 15 14 8.4939 0.7710 0.6935 16 1 8.9177 -0.6310 0.4482 17 1 9.5755 1.6964 0.2703 18 1 8.2196 0.9591 2.1407 19 6 1.4429 -2.1288 1.3050 20 6 0.3464 -2.3906 2.3395 21 6 1.7459 -2.9763 2.5423 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1248 1.4443 -0.1073 27 1 1.5918 1.9863 -0.8314 28 1 1.7670 1.9244 0.9388 29 1 3.8391 -0.7408 0.2486 30 1 4.4485 -1.2139 3.6398 31 1 4.5583 0.4893 4.1449 32 1 2.9688 -0.2401 3.8140 33 1 6.0922 -0.6108 1.7256 34 1 6.0845 1.0488 2.3687 35 1 7.9088 1.7638 -1.9050 36 1 1.3655 -2.6450 0.3481 37 1 0.0501 -1.5599 2.9800 38 1 -0.4521 -3.0792 2.0632 39 1 1.8677 -4.0501 2.3994 40 1 2.3711 -2.5313 3.3163 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695792677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:29 Heat of formation + Delta-G solvation = -16.960384 kcal Electronic energy + Delta-G solvation = -16605.752471 eV Core-core repulsion = 14226.592380 eV Total energy + Delta-G solvation = -2379.160091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.07427 -37.16194 -35.60733 -34.40549 -31.40577 -29.59558 -28.11978 -26.29373 -24.40881 -23.02012 -21.83737 -21.06379 -20.58455 -18.95933 -16.83767 -16.47980 -16.24957 -16.06121 -15.50177 -14.74260 -14.57452 -14.09405 -13.90483 -13.75316 -13.46134 -13.26392 -12.97909 -12.79274 -12.59356 -12.42357 -12.25659 -12.20249 -11.87430 -11.85077 -11.74008 -11.46923 -11.24280 -11.02783 -10.82681 -10.71291 -10.66799 -8.99806 -8.23312 -6.24689 1.36747 1.37977 1.48912 2.39070 2.98688 3.13722 3.60706 3.78202 4.02591 4.12616 4.29065 4.33003 4.37655 4.43178 4.56451 4.57170 4.73884 4.75784 4.83692 4.92169 4.93707 4.99970 5.01850 5.10428 5.15845 5.20966 5.27155 5.31534 5.37018 5.38873 5.42012 5.46524 5.58028 5.60143 5.73532 6.34526 6.54547 6.72093 6.84872 7.39223 8.91746 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.008033 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.946190 B = 3484.733886 C = 4017.985111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.112 4.112 3 C -0.154 4.154 4 C 0.126 3.874 5 H 0.065 0.935 6 N -0.676 5.676 7 C 0.099 3.901 8 H 0.026 0.974 9 C -0.132 4.132 10 C -0.011 4.011 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.009 3.991 14 N -0.949 5.949 15 Si 0.941 3.059 16 H -0.273 1.273 17 H -0.289 1.289 18 H -0.251 1.251 19 C -0.140 4.140 20 C -0.165 4.165 21 C -0.170 4.170 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.339 0.661 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.262 0.738 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 -6.127 8.238 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.132 4.132 3 C -0.212 4.212 4 C 0.016 3.984 5 H 0.084 0.916 6 N -0.307 5.307 7 C -0.011 4.011 8 H 0.044 0.956 9 C -0.189 4.189 10 C -0.049 4.049 11 C -0.557 4.557 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.590 5.590 15 Si 0.766 3.234 16 H -0.198 1.198 17 H -0.215 1.215 18 H -0.175 1.175 19 C -0.159 4.159 20 C -0.202 4.202 21 C -0.208 4.208 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.650 -6.561 8.606 16.647 hybrid contribution 1.043 0.992 -0.813 1.653 sum -11.607 -5.569 7.793 15.049 Atomic orbital electron populations 1.21708 0.93119 1.02453 1.01607 1.21684 0.97697 0.95390 0.98430 1.22004 1.01202 0.96795 1.01150 1.21174 0.87352 0.93449 0.96423 0.91639 1.60635 1.04939 1.50045 1.15096 1.21360 0.94395 0.92100 0.93251 0.95631 1.21803 1.01141 1.01371 0.94614 1.19670 0.94344 0.95941 0.94911 1.21541 0.93251 1.41528 0.99332 0.92783 1.25851 1.02540 0.94803 0.95615 1.70054 1.25207 1.47767 1.15991 0.85790 0.79125 0.78108 0.80358 1.19844 1.21519 1.17509 1.22091 1.02921 0.96428 0.94460 1.23035 0.91941 1.03320 1.01921 1.22793 0.98664 0.99014 1.00293 0.92426 0.92871 0.91299 0.92624 0.93771 0.92784 0.92889 0.84099 0.92486 0.92579 0.92485 0.96506 0.96437 0.92872 0.88796 0.88889 0.87653 0.88949 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.86 71.98 0.64 -2.37 16 2 C -0.11 -3.32 2.34 -10.79 -0.03 -3.35 16 3 C -0.15 -5.24 7.85 71.98 0.56 -4.68 16 4 C 0.13 3.74 1.70 44.92 0.08 3.82 16 5 H 0.07 1.94 6.46 -2.39 -0.02 1.93 16 6 N -0.68 -24.78 5.83 -469.45 -2.74 -27.51 16 7 C 0.10 3.81 1.87 44.92 0.08 3.90 16 8 H 0.03 1.04 6.06 -2.39 -0.01 1.03 16 9 C -0.13 -4.16 9.01 71.98 0.65 -3.51 16 10 C -0.01 -0.51 3.69 29.85 0.11 -0.40 16 11 C -0.52 -28.72 8.75 25.60 0.22 -28.50 16 12 H 0.05 3.20 5.07 -2.91 -0.01 3.18 16 13 C 0.01 0.50 5.47 84.66 0.46 0.96 16 14 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 15 Si 0.94 44.92 27.47 68.60 1.88 46.80 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 18 H -0.25 -11.26 6.53 99.48 0.65 -10.61 16 19 C -0.14 -3.56 3.91 -10.79 -0.04 -3.60 16 20 C -0.16 -3.30 9.94 30.62 0.30 -3.00 16 21 C -0.17 -4.06 10.21 30.62 0.31 -3.75 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.42 6.91 -2.39 -0.02 1.40 16 25 H 0.06 1.81 8.05 -2.39 -0.02 1.79 16 26 H 0.04 1.86 4.32 -2.39 -0.01 1.85 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.68 7.90 -2.38 -0.02 1.66 16 29 H 0.34 14.48 6.46 -89.69 -0.58 13.90 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.58 7.17 -2.39 -0.02 1.57 16 33 H 0.02 0.79 7.59 -2.39 -0.02 0.77 16 34 H 0.02 0.81 7.18 -2.39 -0.02 0.80 16 35 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.09 1.79 8.08 -2.38 -0.02 1.77 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.08 2.21 7.90 -2.39 -0.02 2.19 16 Total: -1.00 -60.45 304.18 3.16 -57.28 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.36 Total: 26.51 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 3.36 Total: -44.49 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.44 Total: -86.11 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -60.45 3.16 -57.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.324 kcal (2) G-P(sol) polarization free energy of solvation -60.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds