Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47386 * 2 1 4 4 C 1.52990 * 109.47424 * 120.00425 * 2 1 3 5 5 H 1.08997 * 109.47426 * 299.99478 * 4 2 1 6 6 N 1.46904 * 109.47658 * 179.97438 * 4 2 1 7 7 C 1.46890 * 111.00329 * 134.41568 * 6 4 2 8 8 H 1.09002 * 109.47077 * 36.89216 * 7 6 4 9 9 C 1.52997 * 109.47508 * 276.89642 * 7 6 4 10 10 C 1.52998 * 109.47261 * 156.89055 * 7 6 4 11 11 C 1.50701 * 109.47365 * 295.00308 * 10 7 6 12 12 H 1.07999 * 119.99366 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00051 * 180.02562 * 11 10 7 14 14 N 1.31512 * 119.99919 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99872 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47013 * 90.00742 * 15 13 11 17 17 H 1.48504 * 109.47090 * 209.99998 * 15 13 11 18 18 H 1.48497 * 109.47547 * 330.00117 * 15 13 11 19 19 C 1.53003 * 109.47168 * 59.99784 * 4 2 1 20 20 C 1.53005 * 117.49793 * 254.07331 * 19 4 2 21 21 C 1.53001 * 60.00019 * 252.50841 * 20 19 4 22 22 H 1.09006 * 109.46493 * 299.99699 * 1 2 3 23 23 H 1.09004 * 109.47082 * 59.99431 * 1 2 3 24 24 H 1.08997 * 109.47375 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46493 * 240.00301 * 2 1 3 26 26 H 1.09004 * 109.47474 * 300.00328 * 3 2 1 27 27 H 1.09002 * 109.47021 * 60.00131 * 3 2 1 28 28 H 1.08996 * 109.47295 * 180.02562 * 3 2 1 29 29 H 1.00897 * 110.99432 * 10.46708 * 6 4 2 30 30 H 1.09001 * 109.47520 * 59.99766 * 9 7 6 31 31 H 1.08999 * 109.47658 * 180.02562 * 9 7 6 32 32 H 1.08999 * 109.47097 * 299.99942 * 9 7 6 33 33 H 1.09000 * 109.46839 * 55.00474 * 10 7 6 34 34 H 1.09001 * 109.47366 * 175.00242 * 10 7 6 35 35 H 0.97004 * 120.00322 * 180.02562 * 14 13 11 36 36 H 1.09002 * 115.54990 * 39.77944 * 19 4 2 37 37 H 1.08996 * 117.49700 * 0.02562 * 20 19 4 38 38 H 1.08993 * 117.49899 * 145.01653 * 20 19 4 39 39 H 1.08996 * 117.49861 * 252.50704 * 21 20 19 40 40 H 1.09005 * 117.49455 * 107.49182 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6769 -0.2075 2.1391 6 7 3.5091 -0.7218 1.2488 7 6 4.0360 -0.3535 2.5696 8 1 3.3988 -0.7772 3.3460 9 6 4.0577 1.1704 2.7033 10 6 5.4571 -0.8993 2.7221 11 6 5.4205 -2.4058 2.7134 12 1 4.4776 -2.9223 2.6099 13 6 6.5903 -3.1246 2.8386 14 7 6.5583 -4.4393 2.8306 15 14 8.2208 -2.2311 3.0183 16 1 8.5017 -1.9982 4.4578 17 1 9.3055 -3.0572 2.4298 18 1 8.1517 -0.9276 2.3102 19 6 1.5300 -2.1638 1.2490 20 6 0.4046 -2.5152 2.2242 21 6 1.8262 -3.0179 2.4835 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9564 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 3.8707 -0.1107 0.5321 30 1 3.0452 1.5592 2.5947 31 1 4.4491 1.4438 3.6831 32 1 4.6948 1.5942 1.9269 33 1 6.0726 -0.5460 1.8948 34 1 5.8807 -0.5516 3.6643 35 1 7.3813 -4.9451 2.9190 36 1 1.5308 -2.6627 0.2799 37 1 0.0273 -1.7187 2.8654 38 1 -0.3355 -3.2453 1.8966 39 1 2.0214 -4.0787 2.3265 40 1 2.3844 -2.5521 3.2957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695792678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = 4.980997 kcal Electronic energy + Delta-G solvation = -16621.012974 eV Core-core repulsion = 14242.804333 eV Total energy + Delta-G solvation = -2378.208641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.81726 -35.56177 -34.56780 -32.25457 -29.86089 -27.77535 -27.09715 -24.97164 -22.50713 -21.76626 -20.67162 -20.00598 -19.11507 -16.48359 -15.45906 -15.18332 -14.78154 -14.13969 -13.92645 -13.62640 -12.94057 -12.69923 -12.65207 -12.26948 -12.17043 -11.98921 -11.65934 -11.59748 -11.21242 -11.01740 -10.85245 -10.71129 -10.53626 -10.45317 -10.20707 -9.72384 -9.60702 -9.43547 -9.32587 -8.86095 -8.34700 -7.48566 -5.82866 -3.75576 3.40113 3.48057 3.51276 4.30340 4.61469 4.76733 5.02708 5.05849 5.15837 5.46066 5.51355 5.60744 5.61428 5.65807 5.70231 5.72631 5.82652 5.88383 5.90093 5.92709 6.02426 6.06417 6.17160 6.26482 6.33533 6.39560 6.51622 6.52607 6.65554 6.70818 6.87201 6.95433 7.22565 7.42023 7.92405 8.02204 8.22441 8.82387 9.33137 9.81162 11.31018 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.008423 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.412120 B = 3323.424998 C = 3936.942578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.151 4.151 4 C 0.125 3.875 5 H 0.047 0.953 6 N -0.656 5.656 7 C 0.101 3.899 8 H 0.068 0.932 9 C -0.185 4.185 10 C -0.005 4.005 11 C -0.487 4.487 12 H 0.088 0.912 13 C 0.059 3.941 14 N -0.910 5.910 15 Si 0.871 3.129 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.269 1.269 19 C -0.125 4.125 20 C -0.199 4.199 21 C -0.149 4.149 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.331 0.669 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.014 0.986 34 H 0.009 0.991 35 H 0.258 0.742 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.162 10.073 -3.905 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.209 4.209 4 C 0.015 3.985 5 H 0.065 0.935 6 N -0.287 5.287 7 C -0.009 4.009 8 H 0.087 0.913 9 C -0.244 4.244 10 C -0.043 4.043 11 C -0.525 4.525 12 H 0.106 0.894 13 C -0.139 4.139 14 N -0.551 5.551 15 Si 0.699 3.301 16 H -0.208 1.208 17 H -0.218 1.218 18 H -0.194 1.194 19 C -0.144 4.144 20 C -0.237 4.237 21 C -0.187 4.187 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.151 0.849 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.972 9.251 -3.784 14.842 hybrid contribution 0.890 1.302 0.120 1.582 sum -10.082 10.553 -3.664 15.048 Atomic orbital electron populations 1.21766 0.95115 1.02051 1.00857 1.21432 0.96024 0.95661 0.99288 1.21958 1.01257 0.96304 1.01337 1.21094 0.88985 0.92675 0.95787 0.93544 1.60407 1.04515 1.58002 1.05780 1.21628 0.99023 0.90142 0.90114 0.91348 1.22690 1.00209 0.99800 1.01736 1.19614 0.91185 0.98001 0.95482 1.21194 0.95583 0.88887 1.46854 0.89435 1.25006 0.98511 0.94649 0.95766 1.69910 1.27237 1.05291 1.52670 0.86931 0.84795 0.80149 0.78177 1.20828 1.21801 1.19424 1.22108 1.00842 0.96515 0.94934 1.23006 0.92524 1.03611 1.04522 1.22786 0.95627 0.99954 1.00288 0.93172 0.93359 0.92031 0.90645 0.92864 0.92962 0.92383 0.84911 0.93868 0.92752 0.93179 0.96802 0.97277 0.93264 0.88651 0.89903 0.89798 0.89227 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.94 37.16 0.33 -1.20 16 2 C -0.10 -1.32 2.48 -90.63 -0.23 -1.54 16 3 C -0.15 -1.72 8.57 37.16 0.32 -1.41 16 4 C 0.12 1.90 1.59 -67.71 -0.11 1.80 16 5 H 0.05 0.73 6.89 -51.93 -0.36 0.37 16 6 N -0.66 -11.89 5.75 -99.75 -0.57 -12.46 16 7 C 0.10 1.94 2.31 -67.72 -0.16 1.78 16 8 H 0.07 1.39 6.41 -51.93 -0.33 1.06 16 9 C -0.19 -2.93 8.94 37.16 0.33 -2.59 16 10 C -0.01 -0.12 3.72 -27.88 -0.10 -0.23 16 11 C -0.49 -13.72 9.39 -34.44 -0.32 -14.05 16 12 H 0.09 2.62 6.62 -52.49 -0.35 2.27 16 13 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 14 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 15 Si 0.87 22.24 27.47 -169.99 -4.67 17.57 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 18 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 19 C -0.12 -2.01 4.13 -90.61 -0.37 -2.38 16 20 C -0.20 -2.86 9.87 -26.73 -0.26 -3.12 16 21 C -0.15 -2.70 9.31 -26.73 -0.25 -2.95 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.69 6.96 -51.93 -0.36 0.33 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 28 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 29 H 0.33 5.61 6.08 -39.29 -0.24 5.37 16 30 H 0.04 0.60 6.71 -51.93 -0.35 0.26 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 34 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 40 H 0.10 1.98 6.41 -51.93 -0.33 1.65 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -29.99 307.03 -7.96 -37.94 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.20 Total: 4.30 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -0.92 Total: -24.23 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.20 Total: -40.21 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.99 -7.96 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.925 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds