Wall clock time and date at job start Mon Mar 30 2020 02:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47386 * 2 1 4 4 C 1.52990 * 109.47424 * 120.00425 * 2 1 3 5 5 H 1.08997 * 109.47426 * 299.99478 * 4 2 1 6 6 N 1.46904 * 109.47658 * 179.97438 * 4 2 1 7 7 C 1.46890 * 111.00329 * 134.41568 * 6 4 2 8 8 H 1.09002 * 109.47077 * 36.89216 * 7 6 4 9 9 C 1.52997 * 109.47508 * 276.89642 * 7 6 4 10 10 C 1.52998 * 109.47261 * 156.89055 * 7 6 4 11 11 C 1.50701 * 109.47365 * 295.00308 * 10 7 6 12 12 H 1.07999 * 119.99366 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00051 * 180.02562 * 11 10 7 14 14 N 1.31512 * 119.99919 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99872 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47013 * 90.00742 * 15 13 11 17 17 H 1.48504 * 109.47090 * 209.99998 * 15 13 11 18 18 H 1.48497 * 109.47547 * 330.00117 * 15 13 11 19 19 C 1.53003 * 109.47168 * 59.99784 * 4 2 1 20 20 C 1.53005 * 117.49793 * 254.07331 * 19 4 2 21 21 C 1.53001 * 60.00019 * 252.50841 * 20 19 4 22 22 H 1.09006 * 109.46493 * 299.99699 * 1 2 3 23 23 H 1.09004 * 109.47082 * 59.99431 * 1 2 3 24 24 H 1.08997 * 109.47375 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46493 * 240.00301 * 2 1 3 26 26 H 1.09004 * 109.47474 * 300.00328 * 3 2 1 27 27 H 1.09002 * 109.47021 * 60.00131 * 3 2 1 28 28 H 1.08996 * 109.47295 * 180.02562 * 3 2 1 29 29 H 1.00897 * 110.99432 * 10.46708 * 6 4 2 30 30 H 1.09001 * 109.47520 * 59.99766 * 9 7 6 31 31 H 1.08999 * 109.47658 * 180.02562 * 9 7 6 32 32 H 1.08999 * 109.47097 * 299.99942 * 9 7 6 33 33 H 1.09000 * 109.46839 * 55.00474 * 10 7 6 34 34 H 1.09001 * 109.47366 * 175.00242 * 10 7 6 35 35 H 0.97004 * 120.00322 * 180.02562 * 14 13 11 36 36 H 1.09002 * 115.54990 * 39.77944 * 19 4 2 37 37 H 1.08996 * 117.49700 * 0.02562 * 20 19 4 38 38 H 1.08993 * 117.49899 * 145.01653 * 20 19 4 39 39 H 1.08996 * 117.49861 * 252.50704 * 21 20 19 40 40 H 1.09005 * 117.49455 * 107.49182 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6769 -0.2075 2.1391 6 7 3.5091 -0.7218 1.2488 7 6 4.0360 -0.3535 2.5696 8 1 3.3988 -0.7772 3.3460 9 6 4.0577 1.1704 2.7033 10 6 5.4571 -0.8993 2.7221 11 6 5.4205 -2.4058 2.7134 12 1 4.4776 -2.9223 2.6099 13 6 6.5903 -3.1246 2.8386 14 7 6.5583 -4.4393 2.8306 15 14 8.2208 -2.2311 3.0183 16 1 8.5017 -1.9982 4.4578 17 1 9.3055 -3.0572 2.4298 18 1 8.1517 -0.9276 2.3102 19 6 1.5300 -2.1638 1.2490 20 6 0.4046 -2.5152 2.2242 21 6 1.8262 -3.0179 2.4835 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9564 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 3.8707 -0.1107 0.5321 30 1 3.0452 1.5592 2.5947 31 1 4.4491 1.4438 3.6831 32 1 4.6948 1.5942 1.9269 33 1 6.0726 -0.5460 1.8948 34 1 5.8807 -0.5516 3.6643 35 1 7.3813 -4.9451 2.9190 36 1 1.5308 -2.6627 0.2799 37 1 0.0273 -1.7187 2.8654 38 1 -0.3355 -3.2453 1.8966 39 1 2.0214 -4.0787 2.3265 40 1 2.3844 -2.5521 3.2957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695792678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:30 Heat of formation + Delta-G solvation = -13.161928 kcal Electronic energy + Delta-G solvation = -16621.799710 eV Core-core repulsion = 14242.804333 eV Total energy + Delta-G solvation = -2378.995378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.09689 -37.03329 -35.81685 -34.32874 -31.39920 -29.45778 -28.04057 -26.23047 -24.43576 -23.10205 -21.82025 -21.47372 -20.49245 -18.66972 -16.74680 -16.49745 -16.35774 -15.76440 -15.38074 -14.89551 -14.52937 -14.11407 -13.93637 -13.75633 -13.45401 -13.37118 -13.11103 -12.77613 -12.58897 -12.45915 -12.32686 -12.08299 -11.86405 -11.77392 -11.55795 -11.47988 -11.29129 -11.10027 -10.75685 -10.65556 -10.60273 -8.87612 -8.10304 -6.07238 1.37200 1.39504 1.50018 2.46301 2.96918 3.24040 3.56206 3.82650 3.99232 4.12833 4.24322 4.29021 4.38818 4.43668 4.46453 4.54308 4.62958 4.79911 4.85622 4.88705 4.95136 4.97176 5.05769 5.12181 5.16680 5.22695 5.24177 5.30345 5.32556 5.36035 5.43910 5.52546 5.56145 5.61931 5.83397 6.48101 6.64381 6.87669 7.05333 7.52840 9.06543 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.008423 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.412120 B = 3323.424998 C = 3936.942578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 C -0.148 4.148 4 C 0.130 3.870 5 H 0.047 0.953 6 N -0.679 5.679 7 C 0.108 3.892 8 H 0.051 0.949 9 C -0.173 4.173 10 C -0.004 4.004 11 C -0.485 4.485 12 H 0.056 0.944 13 C -0.006 4.006 14 N -0.960 5.960 15 Si 0.939 3.061 16 H -0.274 1.274 17 H -0.293 1.293 18 H -0.251 1.251 19 C -0.127 4.127 20 C -0.159 4.159 21 C -0.183 4.183 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.338 0.662 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.257 0.743 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.029 12.831 -4.482 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 C -0.205 4.205 4 C 0.020 3.980 5 H 0.065 0.935 6 N -0.310 5.310 7 C -0.002 4.002 8 H 0.069 0.931 9 C -0.232 4.232 10 C -0.042 4.042 11 C -0.523 4.523 12 H 0.074 0.926 13 C -0.200 4.200 14 N -0.604 5.604 15 Si 0.764 3.236 16 H -0.199 1.199 17 H -0.220 1.220 18 H -0.175 1.175 19 C -0.146 4.146 20 C -0.197 4.197 21 C -0.220 4.220 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.158 0.842 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.856 12.037 -4.364 17.450 hybrid contribution 1.083 0.365 0.292 1.180 sum -10.772 12.402 -4.073 16.925 Atomic orbital electron populations 1.21733 0.93509 1.02178 1.01973 1.21371 0.97283 0.96049 0.97152 1.21924 1.00753 0.95375 1.02437 1.21094 0.87201 0.92274 0.97405 0.93475 1.60247 1.06590 1.58804 1.05399 1.21358 0.95883 0.92558 0.90423 0.93055 1.22529 1.01886 0.96483 1.02339 1.19592 0.94374 0.94914 0.95348 1.21538 0.94323 0.91485 1.44994 0.92585 1.25899 1.02739 0.95336 0.96046 1.70084 1.28173 1.07197 1.54914 0.85833 0.79715 0.79399 0.78615 1.19916 1.21967 1.17508 1.22225 1.01672 0.96721 0.93976 1.23051 0.90753 1.03344 1.02514 1.22565 0.99327 0.98837 1.01285 0.92588 0.91719 0.92426 0.91449 0.91143 0.92482 0.93137 0.84164 0.91708 0.92297 0.92272 0.96910 0.96956 0.93424 0.89138 0.88260 0.87757 0.91567 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.94 71.98 0.64 -1.90 16 2 C -0.10 -2.26 2.48 -10.80 -0.03 -2.29 16 3 C -0.15 -2.89 8.57 71.98 0.62 -2.28 16 4 C 0.13 3.81 1.59 44.91 0.07 3.88 16 5 H 0.05 1.39 6.89 -2.39 -0.02 1.37 16 6 N -0.68 -24.24 5.75 -469.50 -2.70 -26.94 16 7 C 0.11 4.08 2.31 44.92 0.10 4.19 16 8 H 0.05 2.11 6.41 -2.39 -0.02 2.09 16 9 C -0.17 -5.01 8.94 71.98 0.64 -4.37 16 10 C 0.00 -0.21 3.72 29.85 0.11 -0.10 16 11 C -0.48 -28.09 9.39 25.60 0.24 -27.85 16 12 H 0.06 3.54 6.62 -2.91 -0.02 3.52 16 13 C -0.01 -0.37 5.47 84.65 0.46 0.09 16 14 N -0.96 -62.37 13.96 21.45 0.30 -62.07 16 15 Si 0.94 46.18 27.47 68.60 1.88 48.07 16 16 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 18 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 19 C -0.13 -4.06 4.13 -10.79 -0.04 -4.10 16 20 C -0.16 -4.37 9.87 30.60 0.30 -4.07 16 21 C -0.18 -6.91 9.31 30.60 0.28 -6.63 16 22 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.06 1.12 6.96 -2.39 -0.02 1.11 16 25 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.06 1.07 7.56 -2.39 -0.02 1.05 16 28 H 0.05 1.07 6.30 -2.39 -0.02 1.05 16 29 H 0.34 11.03 6.08 -89.70 -0.55 10.48 16 30 H 0.06 1.60 6.71 -2.39 -0.02 1.59 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 33 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 34 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 35 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.10 2.43 8.08 -2.39 -0.02 2.42 16 38 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.07 3.05 6.41 -2.38 -0.02 3.04 16 Total: -1.00 -66.57 307.03 3.28 -63.29 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.39 Total: 23.09 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 3.41 Total: -45.43 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -2.40 Total: -89.01 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.88 Total: 48.07 kcal Total: -66.57 3.28 -63.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.124 kcal (2) G-P(sol) polarization free energy of solvation -66.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds