Wall clock time and date at job start Mon Mar 30 2020 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47229 * 2 1 4 4 C 1.52998 * 109.46929 * 239.99876 * 2 1 3 5 5 C 1.50700 * 109.47075 * 174.10074 * 4 2 1 6 6 H 1.08000 * 120.00205 * 4.85898 * 5 4 2 7 7 C 1.37879 * 120.00188 * 184.85828 * 5 4 2 8 8 N 1.31514 * 119.99835 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00204 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47179 * 60.00087 * 9 7 5 11 11 H 1.48502 * 109.46987 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46925 * 300.00000 * 9 7 5 13 13 N 1.46899 * 109.47094 * 120.00058 * 2 1 3 14 14 C 1.46900 * 111.00106 * 319.37018 * 13 2 1 15 15 C 1.46894 * 111.00150 * 83.32650 * 13 2 1 16 16 H 1.09000 * 109.47218 * 55.92174 * 15 13 2 17 17 C 1.53001 * 109.47283 * 295.91737 * 15 13 2 18 18 C 1.52998 * 109.47270 * 175.91891 * 15 13 2 19 19 C 1.53779 * 113.61619 * 279.13690 * 18 15 13 20 20 C 1.53955 * 87.02215 * 220.04644 * 19 18 15 21 21 C 1.53779 * 113.61779 * 181.52805 * 18 15 13 22 22 H 1.08999 * 109.47398 * 188.42386 * 1 2 3 23 23 H 1.09003 * 109.47061 * 308.42644 * 1 2 3 24 24 H 1.09000 * 109.47216 * 68.41947 * 1 2 3 25 25 H 1.09002 * 109.47307 * 294.10111 * 4 2 1 26 26 H 1.08999 * 109.47592 * 54.09950 * 4 2 1 27 27 H 0.96998 * 120.00499 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47483 * 182.45756 * 14 13 2 29 29 H 1.08998 * 109.47062 * 62.45470 * 14 13 2 30 30 H 1.09005 * 109.47137 * 302.45985 * 14 13 2 31 31 H 1.09000 * 109.47033 * 317.05499 * 17 15 13 32 32 H 1.08998 * 109.46640 * 77.05336 * 17 15 13 33 33 H 1.08999 * 109.46997 * 197.05075 * 17 15 13 34 34 H 1.09005 * 112.85121 * 50.33451 * 18 15 13 35 35 H 1.09000 * 113.61520 * 334.56518 * 19 18 15 36 36 H 1.08997 * 113.61507 * 105.46809 * 19 18 15 37 37 H 1.09003 * 113.53560 * 270.80995 * 20 19 18 38 38 H 1.09004 * 113.74449 * 139.94040 * 20 19 18 39 39 H 1.08998 * 113.61778 * 254.53184 * 21 18 15 40 40 H 1.09004 * 113.61040 * 25.43247 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5398 -0.5961 -1.3244 6 1 4.0835 -0.1248 -0.5190 7 6 4.2182 -1.0833 -2.4215 8 7 3.5562 -1.6568 -3.4025 9 14 6.0773 -0.9275 -2.5151 10 1 6.6922 -1.6411 -1.3672 11 1 6.5608 -1.5254 -3.7855 12 1 6.4568 0.5074 -2.4668 13 7 2.0197 -0.6925 1.1994 14 6 1.2139 -0.3408 2.3763 15 6 2.0449 -2.1468 0.9942 16 1 2.6464 -2.3794 0.1155 17 6 0.6178 -2.6573 0.7851 18 6 2.6540 -2.8248 2.2231 19 6 4.1914 -2.7955 2.2442 20 6 4.1315 -4.2371 2.7813 21 6 2.7608 -4.3534 2.0939 22 1 -0.3634 -1.0165 0.1505 23 1 -0.3633 0.6387 0.8051 24 1 -0.3634 0.3780 -0.9556 25 1 1.7654 -1.7749 -1.1980 26 1 1.5930 -0.2721 -2.1361 27 1 4.0333 -1.9992 -4.1745 28 1 1.6243 -0.8328 3.2580 29 1 0.1854 -0.6679 2.2233 30 1 1.2338 0.7395 2.5206 31 1 -0.0488 -2.1757 1.5006 32 1 0.2930 -2.4229 -0.2286 33 1 0.5925 -3.7367 0.9344 34 1 2.1982 -2.4965 3.1572 35 1 4.6403 -2.7168 1.2541 36 1 4.6047 -2.0804 2.9555 37 1 4.0809 -4.2947 3.8687 38 1 4.8899 -4.8953 2.3574 39 1 2.0210 -4.8943 2.6838 40 1 2.8178 -4.7014 1.0624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695798878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:00 Heat of formation + Delta-G solvation = 29.916416 kcal Electronic energy + Delta-G solvation = -17094.887398 eV Core-core repulsion = 14717.760037 eV Total energy + Delta-G solvation = -2377.127360 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53357 -37.17320 -32.89894 -30.98377 -29.70043 -27.76126 -25.45318 -24.96489 -24.74859 -22.53484 -20.80367 -18.96678 -18.22332 -16.21505 -15.52828 -15.32640 -14.61036 -14.38514 -13.82791 -13.53367 -13.11820 -12.41294 -12.19196 -12.02601 -11.92696 -11.72223 -11.44580 -11.15416 -11.11679 -10.99155 -10.84088 -10.57256 -10.49615 -10.42467 -9.89132 -9.74561 -9.62225 -9.28718 -8.99784 -8.94718 -8.25618 -7.31320 -5.90643 -3.89375 3.39922 3.43935 3.47751 4.54544 4.68288 5.09101 5.14959 5.24614 5.42703 5.47104 5.70644 5.74501 5.84769 5.86946 5.95447 6.02984 6.05056 6.09256 6.11571 6.21560 6.26093 6.27949 6.33548 6.45983 6.51539 6.62335 6.70614 6.76295 6.80317 6.94530 7.01329 7.23530 7.63357 7.79581 8.05806 8.09522 8.17897 8.57226 9.18753 9.73156 11.20744 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.011748 C = 0.008722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.957916 B = 2382.820947 C = 3209.573157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.086 3.914 3 H 0.067 0.933 4 C 0.017 3.983 5 C -0.497 4.497 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.512 5.512 14 C 0.016 3.984 15 C 0.085 3.915 16 H 0.120 0.880 17 C -0.190 4.190 18 C -0.099 4.099 19 C -0.122 4.122 20 C -0.148 4.148 21 C -0.134 4.134 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.026 0.974 26 H 0.019 0.981 27 H 0.258 0.742 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -2.729 10.739 11.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.022 4.022 3 H 0.085 0.915 4 C -0.020 4.020 5 C -0.535 4.535 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.715 3.285 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.234 5.234 14 C -0.133 4.133 15 C -0.023 4.023 16 H 0.138 0.862 17 C -0.248 4.248 18 C -0.118 4.118 19 C -0.159 4.159 20 C -0.186 4.186 21 C -0.172 4.172 22 H 0.089 0.911 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.240 -2.637 10.651 11.441 hybrid contribution 0.098 -0.118 -0.283 0.322 sum -3.141 -2.754 10.368 11.178 Atomic orbital electron populations 1.23020 0.99812 1.02405 1.00698 1.21865 0.90151 0.98598 0.91622 0.91494 1.19483 0.96369 0.95694 0.90486 1.21193 0.91958 1.36920 1.03459 0.91945 1.25006 0.97887 0.95838 0.95915 1.69953 1.35340 1.40348 1.08539 0.86737 0.86458 0.78273 0.77002 1.20243 1.21691 1.20455 1.62289 1.51119 1.06872 1.03133 1.22479 0.95828 1.00313 0.94651 1.21943 0.94827 0.86789 0.98770 0.86233 1.22819 0.99487 1.00637 1.01906 1.22574 0.96475 0.94349 0.98390 1.22838 0.96223 0.94936 1.01932 1.22884 0.97728 0.98514 0.99426 1.22896 0.96771 0.96615 1.00945 0.91149 0.94158 0.93066 0.95641 0.96279 0.93236 0.92458 0.95671 0.92673 0.93074 0.91433 0.93218 0.90339 0.89228 0.92284 0.91148 0.92038 0.92491 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.55 7.66 37.16 0.28 -3.27 16 2 C 0.09 1.77 2.67 -67.71 -0.18 1.59 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.02 0.41 3.79 -27.88 -0.11 0.31 16 5 C -0.50 -13.59 7.87 -34.44 -0.27 -13.86 16 6 H 0.06 1.73 7.75 -52.49 -0.41 1.32 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.51 -9.75 4.73 -226.91 -1.07 -10.82 16 14 C 0.02 0.25 7.88 60.06 0.47 0.72 16 15 C 0.08 1.57 1.55 -67.72 -0.10 1.46 16 16 H 0.12 2.71 5.04 -51.93 -0.26 2.45 16 17 C -0.19 -3.19 7.22 37.16 0.27 -2.92 16 18 C -0.10 -1.58 2.98 -89.81 -0.27 -1.84 16 19 C -0.12 -1.99 7.65 -25.83 -0.20 -2.19 16 20 C -0.15 -2.04 8.09 -25.83 -0.21 -2.25 16 21 C -0.13 -1.93 6.50 -25.92 -0.17 -2.10 16 22 H 0.07 1.21 3.65 -51.93 -0.19 1.02 16 23 H 0.04 0.63 7.01 -51.93 -0.36 0.27 16 24 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 25 H 0.03 0.66 4.57 -51.93 -0.24 0.42 16 26 H 0.02 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.06 0.83 6.09 -51.93 -0.32 0.52 16 29 H 0.03 0.38 4.62 -51.93 -0.24 0.14 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.79 5.08 -51.93 -0.26 0.53 16 32 H 0.07 1.24 5.09 -51.93 -0.26 0.98 16 33 H 0.05 0.76 7.02 -51.93 -0.36 0.40 16 34 H 0.08 1.18 6.18 -51.93 -0.32 0.86 16 35 H 0.09 1.70 7.99 -51.93 -0.41 1.29 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 LS Contribution 289.76 15.07 4.37 4.37 Total: -1.00 -28.14 289.76 -8.14 -36.28 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.58 Total: 2.27 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -0.58 Total: -22.94 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.34 Total: -36.74 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.14 -8.14 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.199 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds