Wall clock time and date at job start Mon Mar 30 2020 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47229 * 2 1 4 4 C 1.52998 * 109.46929 * 239.99876 * 2 1 3 5 5 C 1.50700 * 109.47075 * 174.10074 * 4 2 1 6 6 H 1.08000 * 120.00205 * 4.85898 * 5 4 2 7 7 C 1.37879 * 120.00188 * 184.85828 * 5 4 2 8 8 N 1.31514 * 119.99835 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00204 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47179 * 60.00087 * 9 7 5 11 11 H 1.48502 * 109.46987 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46925 * 300.00000 * 9 7 5 13 13 N 1.46899 * 109.47094 * 120.00058 * 2 1 3 14 14 C 1.46900 * 111.00106 * 319.37018 * 13 2 1 15 15 C 1.46894 * 111.00150 * 83.32650 * 13 2 1 16 16 H 1.09000 * 109.47218 * 55.92174 * 15 13 2 17 17 C 1.53001 * 109.47283 * 295.91737 * 15 13 2 18 18 C 1.52998 * 109.47270 * 175.91891 * 15 13 2 19 19 C 1.53779 * 113.61619 * 279.13690 * 18 15 13 20 20 C 1.53955 * 87.02215 * 220.04644 * 19 18 15 21 21 C 1.53779 * 113.61779 * 181.52805 * 18 15 13 22 22 H 1.08999 * 109.47398 * 188.42386 * 1 2 3 23 23 H 1.09003 * 109.47061 * 308.42644 * 1 2 3 24 24 H 1.09000 * 109.47216 * 68.41947 * 1 2 3 25 25 H 1.09002 * 109.47307 * 294.10111 * 4 2 1 26 26 H 1.08999 * 109.47592 * 54.09950 * 4 2 1 27 27 H 0.96998 * 120.00499 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47483 * 182.45756 * 14 13 2 29 29 H 1.08998 * 109.47062 * 62.45470 * 14 13 2 30 30 H 1.09005 * 109.47137 * 302.45985 * 14 13 2 31 31 H 1.09000 * 109.47033 * 317.05499 * 17 15 13 32 32 H 1.08998 * 109.46640 * 77.05336 * 17 15 13 33 33 H 1.08999 * 109.46997 * 197.05075 * 17 15 13 34 34 H 1.09005 * 112.85121 * 50.33451 * 18 15 13 35 35 H 1.09000 * 113.61520 * 334.56518 * 19 18 15 36 36 H 1.08997 * 113.61507 * 105.46809 * 19 18 15 37 37 H 1.09003 * 113.53560 * 270.80995 * 20 19 18 38 38 H 1.09004 * 113.74449 * 139.94040 * 20 19 18 39 39 H 1.08998 * 113.61778 * 254.53184 * 21 18 15 40 40 H 1.09004 * 113.61040 * 25.43247 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5398 -0.5961 -1.3244 6 1 4.0835 -0.1248 -0.5190 7 6 4.2182 -1.0833 -2.4215 8 7 3.5562 -1.6568 -3.4025 9 14 6.0773 -0.9275 -2.5151 10 1 6.6922 -1.6411 -1.3672 11 1 6.5608 -1.5254 -3.7855 12 1 6.4568 0.5074 -2.4668 13 7 2.0197 -0.6925 1.1994 14 6 1.2139 -0.3408 2.3763 15 6 2.0449 -2.1468 0.9942 16 1 2.6464 -2.3794 0.1155 17 6 0.6178 -2.6573 0.7851 18 6 2.6540 -2.8248 2.2231 19 6 4.1914 -2.7955 2.2442 20 6 4.1315 -4.2371 2.7813 21 6 2.7608 -4.3534 2.0939 22 1 -0.3634 -1.0165 0.1505 23 1 -0.3633 0.6387 0.8051 24 1 -0.3634 0.3780 -0.9556 25 1 1.7654 -1.7749 -1.1980 26 1 1.5930 -0.2721 -2.1361 27 1 4.0333 -1.9992 -4.1745 28 1 1.6243 -0.8328 3.2580 29 1 0.1854 -0.6679 2.2233 30 1 1.2338 0.7395 2.5206 31 1 -0.0488 -2.1757 1.5006 32 1 0.2930 -2.4229 -0.2286 33 1 0.5925 -3.7367 0.9344 34 1 2.1982 -2.4965 3.1572 35 1 4.6403 -2.7168 1.2541 36 1 4.6047 -2.0804 2.9555 37 1 4.0809 -4.2947 3.8687 38 1 4.8899 -4.8953 2.3574 39 1 2.0210 -4.8943 2.6838 40 1 2.8178 -4.7014 1.0624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695798878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:00 Heat of formation + Delta-G solvation = 13.397037 kcal Electronic energy + Delta-G solvation = -17095.603732 eV Core-core repulsion = 14717.760037 eV Total energy + Delta-G solvation = -2377.843695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.94563 -38.54312 -34.97837 -32.62509 -31.20543 -29.47663 -26.96207 -26.34170 -25.98930 -24.44397 -22.27626 -20.31201 -19.70839 -18.37766 -17.02304 -16.81723 -16.33244 -15.81217 -15.34233 -14.91578 -14.74793 -13.90284 -13.74476 -13.55159 -13.30238 -13.22760 -13.14241 -12.83047 -12.59830 -12.49848 -12.42375 -12.36202 -12.14568 -11.77764 -11.49238 -11.13050 -11.10180 -10.91806 -10.84445 -10.61776 -10.41155 -8.77187 -8.10262 -6.14839 1.40253 1.41952 1.49538 2.46059 3.19372 3.30504 3.86649 3.93203 4.01188 4.18023 4.27152 4.43318 4.45726 4.54201 4.59349 4.63496 4.67169 4.80083 4.91817 4.92791 5.01610 5.02740 5.06044 5.13584 5.19952 5.21955 5.22807 5.31327 5.38281 5.43982 5.49834 5.60119 5.77448 5.88413 5.94294 6.36738 6.57227 6.68237 6.99349 7.51091 9.01060 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.011748 C = 0.008722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.957916 B = 2382.820947 C = 3209.573157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.092 3.908 3 H 0.052 0.948 4 C 0.026 3.974 5 C -0.499 4.499 6 H 0.055 0.945 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.529 5.529 14 C 0.017 3.983 15 C 0.089 3.911 16 H 0.068 0.932 17 C -0.182 4.182 18 C -0.095 4.095 19 C -0.132 4.132 20 C -0.133 4.133 21 C -0.131 4.131 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.014 0.986 26 H -0.015 1.015 27 H 0.258 0.742 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 -3.064 13.278 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.016 4.016 3 H 0.070 0.930 4 C -0.011 4.011 5 C -0.538 4.538 6 H 0.073 0.927 7 C -0.195 4.195 8 N -0.578 5.578 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.251 5.251 14 C -0.131 4.131 15 C -0.020 4.020 16 H 0.086 0.914 17 C -0.240 4.240 18 C -0.113 4.113 19 C -0.170 4.170 20 C -0.170 4.170 21 C -0.169 4.169 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.003 0.997 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.544 -2.965 13.203 13.989 hybrid contribution 0.190 0.003 -1.064 1.081 sum -3.354 -2.962 12.139 12.938 Atomic orbital electron populations 1.22903 0.97223 1.03455 1.01408 1.21578 0.92184 0.97160 0.90678 0.92980 1.19322 0.95079 0.95246 0.91459 1.21420 0.93350 1.36020 1.02968 0.92689 1.25766 1.02325 0.95705 0.95725 1.70075 1.37008 1.41580 1.09146 0.85756 0.81251 0.78457 0.77124 1.19559 1.21316 1.19783 1.62213 1.52474 1.07118 1.03344 1.22549 0.96033 1.01071 0.93433 1.21721 0.95196 0.86867 0.98175 0.91397 1.22704 0.98570 1.01709 1.01024 1.22596 0.95730 0.95213 0.97803 1.22790 0.96669 0.97368 1.00168 1.22854 0.97205 0.96135 1.00851 1.22853 0.98012 0.95590 1.00447 0.90438 0.91501 0.93758 0.96761 0.99697 0.93303 0.90714 0.94406 0.91982 0.90999 0.93741 0.91842 0.88167 0.93126 0.91815 0.88444 0.91879 0.89922 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.56 7.66 71.98 0.55 -6.01 16 2 C 0.09 3.85 2.67 44.91 0.12 3.97 16 3 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 4 C 0.03 1.35 3.79 29.85 0.11 1.46 16 5 C -0.50 -28.33 7.87 25.60 0.20 -28.12 16 6 H 0.05 3.14 7.75 -2.91 -0.02 3.12 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 9 Si 0.95 45.74 29.54 68.60 2.03 47.76 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 13 N -0.53 -19.71 4.73 -871.81 -4.12 -23.83 16 14 C 0.02 0.48 7.88 127.69 1.01 1.49 16 15 C 0.09 3.25 1.55 44.92 0.07 3.32 16 16 H 0.07 3.22 5.04 -2.39 -0.01 3.21 16 17 C -0.18 -5.87 7.22 71.98 0.52 -5.35 16 18 C -0.09 -2.84 2.98 -10.27 -0.03 -2.87 16 19 C -0.13 -4.22 7.65 31.18 0.24 -3.99 16 20 C -0.13 -3.34 8.09 31.18 0.25 -3.09 16 21 C -0.13 -3.49 6.50 31.12 0.20 -3.29 16 22 H 0.08 2.54 3.65 -2.39 -0.01 2.54 16 23 H 0.07 1.93 7.01 -2.39 -0.02 1.92 16 24 H 0.04 1.55 8.11 -2.39 -0.02 1.54 16 25 H 0.01 0.78 4.57 -2.39 -0.01 0.76 16 26 H -0.02 -0.89 8.12 -2.39 -0.02 -0.91 16 27 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.07 1.88 6.09 -2.39 -0.01 1.86 16 29 H 0.04 0.99 4.62 -2.39 -0.01 0.98 16 30 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.07 2.01 5.08 -2.39 -0.01 2.00 16 32 H 0.04 1.63 5.09 -2.39 -0.01 1.62 16 33 H 0.06 1.84 7.02 -2.39 -0.02 1.83 16 34 H 0.10 2.60 6.18 -2.38 -0.01 2.59 16 35 H 0.05 1.99 7.99 -2.39 -0.02 1.97 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 1.56 8.14 -2.38 -0.02 1.55 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 1.91 8.10 -2.38 -0.02 1.89 16 Total: -1.00 -62.57 289.76 2.90 -59.67 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.00 Total: 15.38 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 3.71 Total: -41.93 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -3.84 Total: -80.87 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -62.57 2.90 -59.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.067 kcal (2) G-P(sol) polarization free energy of solvation -62.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds