Wall clock time and date at job start Mon Mar 30 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47699 * 2 1 4 4 C 1.53001 * 109.47353 * 119.99682 * 2 1 3 5 5 C 1.50695 * 109.47457 * 184.99994 * 4 2 1 6 6 H 1.07997 * 119.99905 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99804 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00204 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00032 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46930 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47424 * 119.99643 * 9 7 5 12 12 H 1.48502 * 109.46937 * 240.00001 * 9 7 5 13 13 N 1.46900 * 109.47534 * 239.99956 * 2 1 3 14 14 C 1.46902 * 110.99766 * 306.04840 * 13 2 1 15 15 C 1.46902 * 110.99984 * 69.99865 * 13 2 1 16 16 C 1.53780 * 113.61155 * 164.82680 * 15 13 2 17 17 C 1.53786 * 87.07943 * 220.01980 * 16 15 13 18 18 C 1.53000 * 113.61195 * 270.88512 * 17 16 15 19 19 C 1.52995 * 113.68892 * 139.99433 * 17 16 15 20 20 C 1.53781 * 87.08060 * 25.43420 * 17 16 15 21 21 H 1.09005 * 109.47367 * 300.00686 * 1 2 3 22 22 H 1.08997 * 109.47567 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47348 * 59.99909 * 1 2 3 24 24 H 1.09005 * 109.47172 * 305.00473 * 4 2 1 25 25 H 1.09004 * 109.47007 * 64.99480 * 4 2 1 26 26 H 0.97005 * 119.99793 * 180.02562 * 8 7 5 27 27 H 1.09005 * 109.47405 * 65.65010 * 14 13 2 28 28 H 1.08998 * 109.47154 * 185.65255 * 14 13 2 29 29 H 1.09007 * 109.47044 * 305.65335 * 14 13 2 30 30 H 1.09001 * 112.84909 * 296.13174 * 15 13 2 31 31 H 1.09002 * 113.61606 * 334.56815 * 16 15 13 32 32 H 1.08997 * 113.61572 * 105.47247 * 16 15 13 33 33 H 1.09006 * 109.46766 * 157.49701 * 18 17 16 34 34 H 1.08993 * 109.47248 * 277.49693 * 18 17 16 35 35 H 1.09001 * 109.47559 * 37.49666 * 18 17 16 36 36 H 1.08995 * 109.47650 * 322.46161 * 19 17 16 37 37 H 1.08994 * 109.47167 * 82.46756 * 19 17 16 38 38 H 1.09003 * 109.46636 * 202.46254 * 19 17 16 39 39 H 1.09001 * 113.61390 * 220.02276 * 20 17 16 40 40 H 1.08991 * 113.61939 * 89.11487 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0788 -0.0855 0.5396 7 6 4.2303 -1.1934 2.3579 8 7 3.5763 -1.8377 3.2996 9 14 6.0919 -1.0611 2.4370 10 1 6.5836 -0.2908 1.2664 11 1 6.4860 -0.3658 3.6885 12 1 6.6861 -2.4219 2.4185 13 7 2.0197 -0.6925 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.5483 -0.3720 -3.6387 17 6 2.7429 1.1144 -3.9820 18 6 1.6287 1.6923 -4.8570 19 6 4.1418 1.4465 -4.5050 20 6 2.5612 1.4034 -2.4825 21 1 -0.3634 0.5140 0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6053 -0.2617 2.1370 25 1 1.7515 -1.7715 1.2057 26 1 4.0607 -2.2444 4.0351 27 1 0.3597 -1.9515 -1.4701 28 1 1.8883 -2.5631 -2.1466 29 1 1.6205 -2.5884 -0.3870 30 1 0.6883 0.2310 -2.6009 31 1 3.4756 -0.8873 -3.3884 32 1 1.9456 -0.9132 -4.3680 33 1 1.5965 2.7751 -4.7360 34 1 1.8238 1.4490 -5.9014 35 1 0.6721 1.2645 -4.5569 36 1 4.8811 0.8529 -3.9674 37 1 4.1957 1.2170 -5.5692 38 1 4.3451 2.5062 -4.3511 39 1 1.9688 2.2954 -2.2785 40 1 3.4919 1.3734 -1.9161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695799993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:53 Heat of formation + Delta-G solvation = 7.116795 kcal Electronic energy + Delta-G solvation = -16562.324956 eV Core-core repulsion = 14184.208929 eV Total energy + Delta-G solvation = -2378.116026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.74265 -36.61695 -32.73222 -30.83938 -29.09228 -27.38034 -27.26109 -25.80513 -24.60581 -23.15773 -20.84090 -18.58714 -17.90441 -16.13824 -15.73166 -14.91419 -14.59921 -14.20861 -13.90581 -13.44976 -13.21922 -12.75674 -12.52291 -12.26298 -12.12273 -11.63914 -11.61004 -11.56348 -11.44301 -11.04854 -10.95605 -10.63599 -10.50980 -10.44897 -10.23115 -9.98452 -9.84433 -9.61211 -9.07353 -8.90996 -8.22193 -7.38805 -5.85131 -3.82343 3.40184 3.47549 3.53064 4.59265 4.65815 4.67440 4.90413 5.07096 5.13849 5.41766 5.52226 5.64499 5.69054 5.77880 5.85504 5.90017 5.92931 5.97521 6.00814 6.07536 6.08230 6.12424 6.21162 6.23139 6.31372 6.37691 6.52559 6.66471 6.69138 6.80104 6.82519 7.09237 7.60258 7.77995 8.00709 8.12652 8.17876 8.63631 9.23944 9.79063 11.27043 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.008094 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.727045 B = 3458.409498 C = 4101.097159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.502 5.502 14 C 0.027 3.973 15 C 0.054 3.946 16 C -0.116 4.116 17 C -0.095 4.095 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.116 4.116 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.037 0.963 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.256 0.744 27 H 0.013 0.987 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 4.805 -14.062 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.022 4.022 3 H 0.087 0.913 4 C -0.008 4.008 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.225 5.225 14 C -0.121 4.121 15 C -0.055 4.055 16 C -0.154 4.154 17 C -0.095 4.095 18 C -0.182 4.182 19 C -0.189 4.189 20 C -0.153 4.153 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.479 4.658 -13.858 15.028 hybrid contribution 0.060 0.034 0.125 0.143 sum -3.419 4.692 -13.733 14.910 Atomic orbital electron populations 1.22511 1.00038 1.01203 1.00431 1.21876 0.89839 0.98481 0.91955 0.91317 1.19212 0.96354 0.95379 0.89887 1.21213 0.91833 1.32596 1.06798 0.92123 1.25012 0.97946 0.95985 0.96056 1.69980 1.35047 1.37189 1.12411 0.86592 0.86571 0.77531 0.77623 1.19791 1.21446 1.21373 1.62369 1.57636 1.01739 1.00786 1.22317 0.95469 0.91760 1.02556 1.23035 0.96065 0.94997 0.91391 1.23085 1.01005 0.94983 0.96340 1.21707 0.95415 0.96944 0.95450 1.21576 0.97497 1.00411 0.98741 1.21685 0.95698 1.01232 1.00263 1.23064 1.01249 0.96396 0.94614 0.92723 0.92898 0.94392 0.96503 0.96283 0.93443 0.96902 0.92882 0.90293 0.93046 0.89185 0.92587 0.92682 0.92807 0.92725 0.92225 0.93199 0.92914 0.92421 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.47 37.15 0.31 -2.95 16 2 C 0.09 1.80 2.18 -67.72 -0.15 1.65 16 3 H 0.07 1.47 7.29 -51.93 -0.38 1.09 16 4 C 0.03 0.74 4.37 -27.88 -0.12 0.62 16 5 C -0.49 -13.74 8.84 -34.44 -0.30 -14.05 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 N -0.50 -9.70 4.37 -225.93 -0.99 -10.68 16 14 C 0.03 0.49 8.55 60.07 0.51 1.01 16 15 C 0.05 0.86 2.42 -66.90 -0.16 0.70 16 16 C -0.12 -1.64 6.37 -25.92 -0.17 -1.81 16 17 C -0.09 -1.20 1.39 -153.70 -0.21 -1.41 16 18 C -0.13 -1.35 9.07 37.16 0.34 -1.01 16 19 C -0.13 -1.54 9.19 37.16 0.34 -1.20 16 20 C -0.12 -1.74 6.03 -25.92 -0.16 -1.90 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.94 6.45 -51.93 -0.34 0.60 16 23 H 0.04 0.60 6.85 -51.93 -0.36 0.25 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.52 6.23 -51.93 -0.32 0.20 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 28 H 0.05 0.88 7.73 -51.93 -0.40 0.48 16 29 H 0.08 1.63 6.14 -51.92 -0.32 1.31 16 30 H 0.05 0.81 6.52 -51.93 -0.34 0.47 16 31 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 32 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.60 7.34 -51.93 -0.38 0.21 16 36 H 0.06 0.75 7.95 -51.93 -0.41 0.34 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -29.59 307.11 -7.85 -37.43 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.34 Total: -2.76 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 0.14 Total: -19.03 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.25 Total: -37.53 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.59 -7.85 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695799993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.550 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds