Wall clock time and date at job start Mon Mar 30 2020 02:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47699 * 2 1 4 4 C 1.53001 * 109.47353 * 119.99682 * 2 1 3 5 5 C 1.50695 * 109.47457 * 184.99994 * 4 2 1 6 6 H 1.07997 * 119.99905 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99804 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00204 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00032 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46930 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47424 * 119.99643 * 9 7 5 12 12 H 1.48502 * 109.46937 * 240.00001 * 9 7 5 13 13 N 1.46900 * 109.47534 * 239.99956 * 2 1 3 14 14 C 1.46902 * 110.99766 * 306.04840 * 13 2 1 15 15 C 1.46902 * 110.99984 * 69.99865 * 13 2 1 16 16 C 1.53780 * 113.61155 * 164.82680 * 15 13 2 17 17 C 1.53786 * 87.07943 * 220.01980 * 16 15 13 18 18 C 1.53000 * 113.61195 * 270.88512 * 17 16 15 19 19 C 1.52995 * 113.68892 * 139.99433 * 17 16 15 20 20 C 1.53781 * 87.08060 * 25.43420 * 17 16 15 21 21 H 1.09005 * 109.47367 * 300.00686 * 1 2 3 22 22 H 1.08997 * 109.47567 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47348 * 59.99909 * 1 2 3 24 24 H 1.09005 * 109.47172 * 305.00473 * 4 2 1 25 25 H 1.09004 * 109.47007 * 64.99480 * 4 2 1 26 26 H 0.97005 * 119.99793 * 180.02562 * 8 7 5 27 27 H 1.09005 * 109.47405 * 65.65010 * 14 13 2 28 28 H 1.08998 * 109.47154 * 185.65255 * 14 13 2 29 29 H 1.09007 * 109.47044 * 305.65335 * 14 13 2 30 30 H 1.09001 * 112.84909 * 296.13174 * 15 13 2 31 31 H 1.09002 * 113.61606 * 334.56815 * 16 15 13 32 32 H 1.08997 * 113.61572 * 105.47247 * 16 15 13 33 33 H 1.09006 * 109.46766 * 157.49701 * 18 17 16 34 34 H 1.08993 * 109.47248 * 277.49693 * 18 17 16 35 35 H 1.09001 * 109.47559 * 37.49666 * 18 17 16 36 36 H 1.08995 * 109.47650 * 322.46161 * 19 17 16 37 37 H 1.08994 * 109.47167 * 82.46756 * 19 17 16 38 38 H 1.09003 * 109.46636 * 202.46254 * 19 17 16 39 39 H 1.09001 * 113.61390 * 220.02276 * 20 17 16 40 40 H 1.08991 * 113.61939 * 89.11487 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0788 -0.0855 0.5396 7 6 4.2303 -1.1934 2.3579 8 7 3.5763 -1.8377 3.2996 9 14 6.0919 -1.0611 2.4370 10 1 6.5836 -0.2908 1.2664 11 1 6.4860 -0.3658 3.6885 12 1 6.6861 -2.4219 2.4185 13 7 2.0197 -0.6925 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.5483 -0.3720 -3.6387 17 6 2.7429 1.1144 -3.9820 18 6 1.6287 1.6923 -4.8570 19 6 4.1418 1.4465 -4.5050 20 6 2.5612 1.4034 -2.4825 21 1 -0.3634 0.5140 0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6053 -0.2617 2.1370 25 1 1.7515 -1.7715 1.2057 26 1 4.0607 -2.2444 4.0351 27 1 0.3597 -1.9515 -1.4701 28 1 1.8883 -2.5631 -2.1466 29 1 1.6205 -2.5884 -0.3870 30 1 0.6883 0.2310 -2.6009 31 1 3.4756 -0.8873 -3.3884 32 1 1.9456 -0.9132 -4.3680 33 1 1.5965 2.7751 -4.7360 34 1 1.8238 1.4490 -5.9014 35 1 0.6721 1.2645 -4.5569 36 1 4.8811 0.8529 -3.9674 37 1 4.1957 1.2170 -5.5692 38 1 4.3451 2.5062 -4.3511 39 1 1.9688 2.2954 -2.2785 40 1 3.4919 1.3734 -1.9161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695799993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:52 Heat of formation + Delta-G solvation = -9.919756 kcal Electronic energy + Delta-G solvation = -16563.063716 eV Core-core repulsion = 14184.208929 eV Total energy + Delta-G solvation = -2378.854787 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96601 -38.10685 -34.84123 -32.39171 -30.36819 -29.21969 -28.21941 -27.09318 -25.93450 -25.15891 -22.28504 -20.12405 -19.04854 -18.35045 -17.17312 -16.55880 -16.06853 -15.72733 -15.12013 -14.69153 -14.60829 -14.07255 -13.94857 -13.76763 -13.53467 -13.33757 -13.12716 -12.87123 -12.64563 -12.58499 -12.43500 -12.34223 -12.25606 -11.98807 -11.56737 -11.49416 -11.13501 -11.06938 -10.82086 -10.77668 -10.47339 -8.86447 -8.09712 -6.14088 1.40236 1.41143 1.54376 2.47306 3.18368 3.31577 3.60683 3.82948 3.90921 3.99525 4.26432 4.41337 4.43014 4.48263 4.56680 4.64957 4.70676 4.84522 4.87537 4.92604 4.99061 4.99808 5.06348 5.08351 5.14801 5.20072 5.21615 5.26239 5.28625 5.33267 5.49992 5.59082 5.72697 5.76156 5.91208 6.34934 6.51970 6.62818 7.00037 7.51557 9.02694 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.008094 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.727045 B = 3458.409498 C = 4101.097159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.495 4.495 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.955 3.045 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.525 5.525 14 C 0.033 3.967 15 C 0.051 3.949 16 C -0.113 4.113 17 C -0.082 4.082 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.121 4.121 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.063 0.937 24 H -0.011 1.011 25 H -0.003 1.003 26 H 0.258 0.742 27 H 0.031 0.969 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 5.640 -16.281 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.079 0.921 4 C -0.003 4.003 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.248 5.248 14 C -0.115 4.115 15 C -0.057 4.057 16 C -0.150 4.150 17 C -0.082 4.082 18 C -0.179 4.179 19 C -0.188 4.188 20 C -0.159 4.159 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.007 0.993 25 H 0.015 0.985 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.504 5.502 -16.093 17.365 hybrid contribution 0.054 -0.230 0.816 0.850 sum -3.450 5.271 -15.277 16.525 Atomic orbital electron populations 1.22376 0.97526 1.01572 1.01718 1.21533 0.91774 0.97181 0.90685 0.92095 1.19076 0.95263 0.94404 0.91528 1.21501 0.93250 1.32084 1.06505 0.92557 1.25855 1.02848 0.95725 0.95772 1.70106 1.36973 1.38197 1.13109 0.85534 0.80734 0.77663 0.77917 1.18992 1.20738 1.20913 1.62265 1.58516 1.02471 1.01538 1.22222 0.96737 0.91117 1.01402 1.23172 0.97033 0.95098 0.90404 1.23035 1.00066 0.96176 0.95768 1.21692 0.96865 0.95580 0.94093 1.21569 0.96432 1.00800 0.99087 1.21676 0.94632 1.01378 1.01130 1.23042 0.99924 0.96398 0.96491 0.92679 0.92955 0.91815 0.99253 0.98470 0.93306 0.95084 0.91294 0.93641 0.91785 0.91007 0.90787 0.91864 0.91178 0.92635 0.93767 0.91360 0.92276 0.91689 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 8.47 71.98 0.61 -5.38 16 2 C 0.10 4.04 2.18 44.91 0.10 4.14 16 3 H 0.06 2.62 7.29 -2.38 -0.02 2.60 16 4 C 0.03 1.84 4.37 29.85 0.13 1.97 16 5 C -0.49 -28.70 8.84 25.60 0.23 -28.48 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 8 N -0.94 -58.74 13.29 21.45 0.28 -58.45 16 9 Si 0.96 46.29 29.54 68.60 2.03 48.32 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 N -0.52 -20.08 4.37 -868.70 -3.79 -23.87 16 14 C 0.03 1.20 8.55 127.69 1.09 2.29 16 15 C 0.05 1.54 2.42 45.44 0.11 1.65 16 16 C -0.11 -2.95 6.37 31.12 0.20 -2.75 16 17 C -0.08 -1.87 1.39 -51.66 -0.07 -1.95 16 18 C -0.12 -2.18 9.07 71.98 0.65 -1.53 16 19 C -0.13 -2.78 9.19 71.98 0.66 -2.12 16 20 C -0.12 -3.49 6.03 31.12 0.19 -3.31 16 21 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 22 H 0.05 1.80 6.45 -2.39 -0.02 1.79 16 23 H 0.06 1.88 6.85 -2.38 -0.02 1.86 16 24 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 25 H 0.00 -0.17 6.23 -2.38 -0.01 -0.18 16 26 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 27 H 0.03 0.99 6.57 -2.38 -0.02 0.97 16 28 H 0.07 2.21 7.73 -2.39 -0.02 2.20 16 29 H 0.04 1.92 6.14 -2.38 -0.01 1.91 16 30 H 0.06 1.80 6.52 -2.39 -0.02 1.79 16 31 H 0.07 2.15 7.97 -2.39 -0.02 2.14 16 32 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.00 7.34 -2.39 -0.02 0.98 16 36 H 0.04 1.06 7.95 -2.39 -0.02 1.04 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 40 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -64.25 307.11 3.84 -60.41 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.97 Total: 8.97 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 4.36 Total: -35.37 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -3.51 Total: -82.32 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -64.25 3.84 -60.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695799993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.488 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds