Wall clock time and date at job start Mon Mar 30 2020 03:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47174 * 2 1 4 4 C 1.46904 * 111.00385 * 290.48927 * 3 2 1 5 5 H 1.09001 * 109.46671 * 79.34638 * 4 3 2 6 6 C 1.53000 * 109.46651 * 319.34992 * 4 3 2 7 7 C 1.52995 * 109.47121 * 199.34636 * 4 3 2 8 8 C 1.50696 * 109.47523 * 298.66920 * 7 4 3 9 9 H 1.08001 * 120.00186 * 4.85779 * 8 7 4 10 10 C 1.37880 * 119.99985 * 184.86268 * 8 7 4 11 11 N 1.31514 * 119.99828 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99912 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47220 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47409 * 119.99602 * 12 10 8 15 15 H 1.48496 * 109.47136 * 239.99663 * 12 10 8 16 16 C 1.46902 * 111.00292 * 166.53439 * 3 2 1 17 17 H 1.08995 * 109.47389 * 177.76703 * 16 3 2 18 18 C 1.52995 * 109.46881 * 57.76339 * 16 3 2 19 19 C 1.53000 * 109.46940 * 297.76878 * 16 3 2 20 20 C 1.53002 * 117.49876 * 253.16666 * 19 16 3 21 21 C 1.53002 * 117.49929 * 184.50703 * 19 16 3 22 22 H 1.08997 * 109.46927 * 185.19181 * 1 2 3 23 23 H 1.08998 * 109.47528 * 305.20034 * 1 2 3 24 24 H 1.09006 * 109.46542 * 65.20226 * 1 2 3 25 25 H 1.09008 * 109.47405 * 240.00273 * 2 1 3 26 26 H 1.08993 * 109.47093 * 120.00166 * 2 1 3 27 27 H 1.08993 * 109.47335 * 307.29044 * 6 4 3 28 28 H 1.08998 * 109.47232 * 67.29696 * 6 4 3 29 29 H 1.09001 * 109.46701 * 187.29248 * 6 4 3 30 30 H 1.09007 * 109.47122 * 58.66802 * 7 4 3 31 31 H 1.09000 * 109.47014 * 178.66496 * 7 4 3 32 32 H 0.97009 * 119.99512 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47526 * 77.79174 * 18 16 3 34 34 H 1.09012 * 109.47411 * 197.78925 * 18 16 3 35 35 H 1.09001 * 109.47367 * 317.78895 * 18 16 3 36 36 H 1.08998 * 115.55478 * 38.83137 * 19 16 3 37 37 H 1.09004 * 117.49852 * 359.97438 * 20 19 16 38 38 H 1.08996 * 117.50290 * 145.01987 * 20 19 16 39 39 H 1.09000 * 117.49624 * 214.97579 * 21 19 16 40 40 H 1.08999 * 117.49795 * 359.97288 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7426 2.0414 -1.2847 5 1 0.7005 2.3598 -1.3126 6 6 2.0063 1.0583 -2.4270 7 6 2.6530 3.2611 -1.4410 8 6 2.3703 4.2441 -0.3343 9 1 1.6737 3.9882 0.4504 10 6 3.0008 5.4702 -0.3237 11 7 3.8493 5.7816 -1.2790 12 14 2.6498 6.6890 1.0477 13 1 1.6652 6.1020 1.9917 14 1 3.9093 6.9951 1.7724 15 1 2.0955 7.9392 0.4690 16 6 3.4526 1.4368 0.3194 17 1 3.7980 2.4695 0.2737 18 6 4.2313 0.5934 -0.6922 19 6 3.6815 0.8842 1.7276 20 6 4.0202 1.8861 2.8332 21 6 5.1029 0.9503 2.2900 22 1 -0.3633 -1.0234 0.0930 23 1 -0.3634 0.5924 0.8397 24 1 -0.3632 0.4311 -0.9330 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.0079 0.6411 -2.3234 28 1 1.2720 0.2536 -2.3906 29 1 1.9268 1.5799 -3.3808 30 1 3.6951 2.9456 -1.3892 31 1 2.4640 3.7344 -2.4045 32 1 4.2931 6.6442 -1.2713 33 1 4.3333 1.1475 -1.6252 34 1 5.2205 0.3688 -0.2930 35 1 3.6950 -0.3370 -0.8789 36 1 3.0725 0.0220 1.9992 37 1 4.0803 2.9390 2.5572 38 1 3.6342 1.6829 3.8321 39 1 5.4287 0.1317 2.9318 40 1 5.8750 1.3870 1.6566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695801463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:42 Heat of formation + Delta-G solvation = 35.518795 kcal Electronic energy + Delta-G solvation = -17090.893984 eV Core-core repulsion = 14714.009561 eV Total energy + Delta-G solvation = -2376.884423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.31296 -36.19503 -33.09651 -31.31014 -30.57409 -27.90809 -27.21085 -23.46596 -23.12908 -21.83239 -21.70945 -19.78361 -17.83128 -16.25029 -15.71350 -15.47883 -14.58378 -14.14552 -14.02044 -13.35949 -13.11619 -12.46412 -12.37076 -11.96983 -11.76090 -11.56541 -11.47775 -11.19044 -11.11907 -10.94692 -10.80746 -10.61586 -10.54868 -10.35464 -9.80895 -9.75031 -9.46848 -9.39954 -8.98537 -8.94841 -8.27540 -7.30122 -5.91608 -3.89990 3.36329 3.44743 3.50972 4.24386 4.54494 4.76425 5.20424 5.39765 5.44560 5.49135 5.57193 5.70407 5.80338 5.87286 5.93467 5.96772 6.02878 6.07586 6.09510 6.13162 6.20156 6.24824 6.41103 6.45627 6.49696 6.59878 6.68814 6.71750 6.76460 6.81676 7.02425 7.19724 7.63569 7.79069 8.05902 8.10587 8.18227 8.56903 9.19683 9.72750 11.19804 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.011152 C = 0.009176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.814156 B = 2510.152924 C = 3050.568852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.036 3.964 3 N -0.506 5.506 4 C 0.088 3.912 5 H 0.068 0.932 6 C -0.202 4.202 7 C 0.016 3.984 8 C -0.495 4.495 9 H 0.066 0.934 10 C 0.052 3.948 11 N -0.901 5.901 12 Si 0.885 3.115 13 H -0.271 1.271 14 H -0.287 1.287 15 H -0.287 1.287 16 C 0.102 3.898 17 H 0.125 0.875 18 C -0.186 4.186 19 C -0.134 4.134 20 C -0.172 4.172 21 C -0.188 4.188 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.257 0.743 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -11.131 3.210 11.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 N -0.229 5.229 4 C -0.020 4.020 5 H 0.086 0.914 6 C -0.260 4.260 7 C -0.021 4.021 8 C -0.534 4.534 9 H 0.084 0.916 10 C -0.147 4.147 11 N -0.542 5.542 12 Si 0.713 3.287 13 H -0.196 1.196 14 H -0.213 1.213 15 H -0.214 1.214 16 C -0.006 4.006 17 H 0.143 0.857 18 C -0.245 4.245 19 C -0.152 4.152 20 C -0.208 4.208 21 C -0.226 4.226 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.074 -10.724 3.526 11.340 hybrid contribution 0.278 0.285 0.044 0.400 sum -0.796 -10.439 3.570 11.061 Atomic orbital electron populations 1.21733 0.95943 1.00134 1.02336 1.22235 0.95355 0.91653 1.00002 1.62275 1.15014 1.13569 1.31999 1.21814 1.00900 0.94561 0.84707 0.91423 1.22990 1.02123 1.00356 1.00576 1.19467 0.94219 0.90882 0.97488 1.21287 1.24373 0.98798 1.08901 0.91583 1.25019 0.95608 0.98253 0.95851 1.69982 1.29029 1.22226 1.32918 0.86635 0.78050 0.81369 0.82615 1.19572 1.21307 1.21391 1.21534 0.87370 1.01804 0.89860 0.85738 1.22798 1.00389 1.00306 1.00986 1.22320 0.96939 1.00629 0.95335 1.22946 1.02505 0.97640 0.97755 1.22907 0.92681 1.02708 1.04294 0.93619 0.92099 0.92957 0.94609 0.91815 0.91269 0.93781 0.93086 0.95997 0.96203 0.93360 0.91489 0.93184 0.93163 0.88697 0.88092 0.89830 0.89771 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.67 37.16 0.36 -1.72 16 2 C 0.04 0.56 4.25 -3.83 -0.02 0.54 16 3 N -0.51 -9.58 4.28 -218.73 -0.94 -10.51 16 4 C 0.09 1.80 2.06 -67.71 -0.14 1.66 16 5 H 0.07 1.45 7.68 -51.93 -0.40 1.05 16 6 C -0.20 -3.54 7.63 37.16 0.28 -3.25 16 7 C 0.02 0.41 3.86 -27.89 -0.11 0.30 16 8 C -0.50 -13.48 7.49 -34.44 -0.26 -13.74 16 9 H 0.07 1.83 7.64 -52.49 -0.40 1.43 16 10 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 11 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 12 Si 0.88 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 C 0.10 1.92 1.88 -67.71 -0.13 1.79 16 17 H 0.13 2.86 4.72 -51.93 -0.25 2.61 16 18 C -0.19 -3.14 7.30 37.15 0.27 -2.87 16 19 C -0.13 -2.20 5.01 -90.62 -0.45 -2.65 16 20 C -0.17 -2.82 10.18 -26.69 -0.27 -3.09 16 21 C -0.19 -2.79 9.55 -26.69 -0.25 -3.04 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.78 6.78 -51.93 -0.35 0.42 16 25 H 0.04 0.55 4.40 -51.92 -0.23 0.32 16 26 H 0.06 0.95 5.75 -51.93 -0.30 0.65 16 27 H 0.07 1.18 3.74 -51.93 -0.19 0.99 16 28 H 0.04 0.69 5.99 -51.93 -0.31 0.38 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.02 0.56 4.89 -51.92 -0.25 0.31 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.07 1.22 5.10 -51.93 -0.26 0.96 16 34 H 0.05 0.78 7.19 -51.92 -0.37 0.40 16 35 H 0.05 0.78 5.37 -51.93 -0.28 0.50 16 36 H 0.10 1.47 6.08 -51.93 -0.32 1.16 16 37 H 0.10 1.89 8.08 -51.93 -0.42 1.47 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.40 7.93 -51.93 -0.41 0.98 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -28.16 291.26 -8.06 -36.22 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.42 Total: 3.74 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -0.81 Total: -24.69 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.20 Total: -36.39 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.16 -8.06 -36.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695801463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.739 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds