Wall clock time and date at job start Mon Mar 30 2020 03:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47174 * 2 1 4 4 C 1.46904 * 111.00385 * 290.48927 * 3 2 1 5 5 H 1.09001 * 109.46671 * 79.34638 * 4 3 2 6 6 C 1.53000 * 109.46651 * 319.34992 * 4 3 2 7 7 C 1.52995 * 109.47121 * 199.34636 * 4 3 2 8 8 C 1.50696 * 109.47523 * 298.66920 * 7 4 3 9 9 H 1.08001 * 120.00186 * 4.85779 * 8 7 4 10 10 C 1.37880 * 119.99985 * 184.86268 * 8 7 4 11 11 N 1.31514 * 119.99828 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99912 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47220 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47409 * 119.99602 * 12 10 8 15 15 H 1.48496 * 109.47136 * 239.99663 * 12 10 8 16 16 C 1.46902 * 111.00292 * 166.53439 * 3 2 1 17 17 H 1.08995 * 109.47389 * 177.76703 * 16 3 2 18 18 C 1.52995 * 109.46881 * 57.76339 * 16 3 2 19 19 C 1.53000 * 109.46940 * 297.76878 * 16 3 2 20 20 C 1.53002 * 117.49876 * 253.16666 * 19 16 3 21 21 C 1.53002 * 117.49929 * 184.50703 * 19 16 3 22 22 H 1.08997 * 109.46927 * 185.19181 * 1 2 3 23 23 H 1.08998 * 109.47528 * 305.20034 * 1 2 3 24 24 H 1.09006 * 109.46542 * 65.20226 * 1 2 3 25 25 H 1.09008 * 109.47405 * 240.00273 * 2 1 3 26 26 H 1.08993 * 109.47093 * 120.00166 * 2 1 3 27 27 H 1.08993 * 109.47335 * 307.29044 * 6 4 3 28 28 H 1.08998 * 109.47232 * 67.29696 * 6 4 3 29 29 H 1.09001 * 109.46701 * 187.29248 * 6 4 3 30 30 H 1.09007 * 109.47122 * 58.66802 * 7 4 3 31 31 H 1.09000 * 109.47014 * 178.66496 * 7 4 3 32 32 H 0.97009 * 119.99512 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47526 * 77.79174 * 18 16 3 34 34 H 1.09012 * 109.47411 * 197.78925 * 18 16 3 35 35 H 1.09001 * 109.47367 * 317.78895 * 18 16 3 36 36 H 1.08998 * 115.55478 * 38.83137 * 19 16 3 37 37 H 1.09004 * 117.49852 * 359.97438 * 20 19 16 38 38 H 1.08996 * 117.50290 * 145.01987 * 20 19 16 39 39 H 1.09000 * 117.49624 * 214.97579 * 21 19 16 40 40 H 1.08999 * 117.49795 * 359.97288 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7426 2.0414 -1.2847 5 1 0.7005 2.3598 -1.3126 6 6 2.0063 1.0583 -2.4270 7 6 2.6530 3.2611 -1.4410 8 6 2.3703 4.2441 -0.3343 9 1 1.6737 3.9882 0.4504 10 6 3.0008 5.4702 -0.3237 11 7 3.8493 5.7816 -1.2790 12 14 2.6498 6.6890 1.0477 13 1 1.6652 6.1020 1.9917 14 1 3.9093 6.9951 1.7724 15 1 2.0955 7.9392 0.4690 16 6 3.4526 1.4368 0.3194 17 1 3.7980 2.4695 0.2737 18 6 4.2313 0.5934 -0.6922 19 6 3.6815 0.8842 1.7276 20 6 4.0202 1.8861 2.8332 21 6 5.1029 0.9503 2.2900 22 1 -0.3633 -1.0234 0.0930 23 1 -0.3634 0.5924 0.8397 24 1 -0.3632 0.4311 -0.9330 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.0079 0.6411 -2.3234 28 1 1.2720 0.2536 -2.3906 29 1 1.9268 1.5799 -3.3808 30 1 3.6951 2.9456 -1.3892 31 1 2.4640 3.7344 -2.4045 32 1 4.2931 6.6442 -1.2713 33 1 4.3333 1.1475 -1.6252 34 1 5.2205 0.3688 -0.2930 35 1 3.6950 -0.3370 -0.8789 36 1 3.0725 0.0220 1.9992 37 1 4.0803 2.9390 2.5572 38 1 3.6342 1.6829 3.8321 39 1 5.4287 0.1317 2.9318 40 1 5.8750 1.3870 1.6566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695801463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:42 Heat of formation + Delta-G solvation = 19.371830 kcal Electronic energy + Delta-G solvation = -17091.594169 eV Core-core repulsion = 14714.009561 eV Total energy + Delta-G solvation = -2377.584608 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78448 -37.54256 -35.09427 -32.89541 -32.05045 -29.48203 -28.89468 -25.30543 -24.47625 -23.30855 -23.05069 -21.28406 -19.29512 -18.38212 -17.18657 -16.96331 -16.39697 -15.66053 -15.38265 -14.93940 -14.53788 -14.09487 -13.81537 -13.56623 -13.27823 -13.18503 -12.95769 -12.82761 -12.66614 -12.40067 -12.31776 -12.26306 -12.14761 -11.88799 -11.42791 -11.15369 -11.05971 -10.93722 -10.80041 -10.64628 -10.44197 -8.75483 -8.10544 -6.14466 1.38139 1.40481 1.53126 2.46018 2.93501 3.22083 3.40341 3.90258 4.09413 4.22559 4.29084 4.40445 4.46483 4.50509 4.54210 4.58806 4.63663 4.76270 4.83731 4.86033 4.88965 4.94113 5.10887 5.12648 5.19275 5.21320 5.30334 5.33305 5.35159 5.38512 5.48645 5.53318 5.73862 5.81541 5.93692 6.36515 6.59666 6.71232 7.00651 7.51540 9.01160 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.011152 C = 0.009176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.814156 B = 2510.152924 C = 3050.568852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 N -0.521 5.521 4 C 0.097 3.903 5 H 0.054 0.946 6 C -0.193 4.193 7 C 0.025 3.975 8 C -0.494 4.494 9 H 0.057 0.943 10 C 0.000 4.000 11 N -0.937 5.937 12 Si 0.947 3.053 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.104 3.896 17 H 0.074 0.926 18 C -0.178 4.178 19 C -0.138 4.138 20 C -0.186 4.186 21 C -0.167 4.167 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.009 0.991 31 H -0.014 1.014 32 H 0.258 0.742 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.309 -13.299 4.480 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 N -0.244 5.244 4 C -0.011 4.011 5 H 0.072 0.928 6 C -0.251 4.251 7 C -0.012 4.012 8 C -0.533 4.533 9 H 0.076 0.924 10 C -0.196 4.196 11 N -0.579 5.579 12 Si 0.773 3.227 13 H -0.190 1.190 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.004 4.004 17 H 0.092 0.908 18 C -0.236 4.236 19 C -0.156 4.156 20 C -0.223 4.223 21 C -0.205 4.205 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.004 0.996 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.134 0.866 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.485 -12.901 4.801 13.845 hybrid contribution 0.402 0.949 -0.350 1.089 sum -1.083 -11.952 4.451 12.800 Atomic orbital electron populations 1.21714 0.94919 1.01739 1.01409 1.22348 0.96162 0.89549 1.01138 1.62222 1.15402 1.15940 1.30866 1.21501 0.98690 0.93815 0.87100 0.92804 1.22879 1.03240 1.00161 0.98855 1.19310 0.94596 0.92357 0.94900 1.21474 1.23475 0.99335 1.08968 0.92427 1.25765 0.95592 1.00190 0.98043 1.70097 1.30262 1.22771 1.34752 0.85657 0.77984 0.79073 0.79946 1.19014 1.20860 1.21004 1.21299 0.87434 0.99538 0.92126 0.90780 1.22681 1.01099 1.00359 0.99455 1.22291 0.98671 1.00958 0.93665 1.22919 1.04468 0.96055 0.98841 1.22973 0.91487 1.02495 1.03515 0.90632 0.93292 0.93760 0.93622 0.90294 0.90670 0.91226 0.93661 0.97252 0.99583 0.93357 0.93565 0.91961 0.91122 0.86777 0.91519 0.87767 0.86575 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.67 71.98 0.70 -2.96 16 2 C 0.04 1.01 4.25 86.30 0.37 1.37 16 3 N -0.52 -19.33 4.28 -845.92 -3.62 -22.95 16 4 C 0.10 4.01 2.06 44.91 0.09 4.10 16 5 H 0.05 2.35 7.68 -2.39 -0.02 2.33 16 6 C -0.19 -6.56 7.63 71.98 0.55 -6.01 16 7 C 0.03 1.31 3.86 29.85 0.12 1.43 16 8 C -0.49 -27.84 7.49 25.60 0.19 -27.64 16 9 H 0.06 3.28 7.64 -2.91 -0.02 3.26 16 10 C 0.00 0.02 5.46 84.66 0.46 0.49 16 11 N -0.94 -57.19 13.29 21.45 0.28 -56.91 16 12 Si 0.95 45.70 29.54 68.60 2.03 47.73 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 16 C 0.10 3.87 1.88 44.91 0.08 3.95 16 17 H 0.07 3.53 4.72 -2.39 -0.01 3.52 16 18 C -0.18 -5.75 7.30 71.98 0.53 -5.23 16 19 C -0.14 -4.26 5.01 -10.79 -0.05 -4.31 16 20 C -0.19 -5.93 10.18 30.62 0.31 -5.62 16 21 C -0.17 -4.57 9.55 30.62 0.29 -4.28 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.04 1.21 6.78 -2.38 -0.02 1.20 16 25 H 0.05 1.23 4.40 -2.38 -0.01 1.22 16 26 H 0.08 2.04 5.75 -2.39 -0.01 2.03 16 27 H 0.07 2.47 3.74 -2.39 -0.01 2.46 16 28 H 0.07 2.01 5.99 -2.39 -0.01 1.99 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.01 0.51 4.89 -2.38 -0.01 0.50 16 31 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 32 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 33 H 0.05 1.68 5.10 -2.39 -0.01 1.67 16 34 H 0.06 1.83 7.19 -2.38 -0.02 1.82 16 35 H 0.07 1.98 5.37 -2.39 -0.01 1.97 16 36 H 0.11 3.12 6.08 -2.39 -0.01 3.10 16 37 H 0.07 2.58 8.08 -2.38 -0.02 2.56 16 38 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.08 2.41 7.93 -2.39 -0.02 2.39 16 Total: -1.00 -62.33 291.26 3.34 -58.99 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.01 Total: 17.85 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 3.63 Total: -44.71 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -3.34 Total: -79.86 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -62.33 3.34 -58.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695801463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.363 kcal (2) G-P(sol) polarization free energy of solvation -62.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds