Wall clock time and date at job start Mon Mar 30 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46911 * 109.46753 * 2 1 4 4 C 1.46893 * 110.99660 * 189.46700 * 3 2 1 5 5 H 1.09002 * 109.47240 * 186.04600 * 4 3 2 6 6 C 1.53005 * 109.47684 * 306.04628 * 4 3 2 7 7 C 1.52999 * 109.47306 * 66.04402 * 4 3 2 8 8 C 1.50701 * 109.46817 * 64.99996 * 7 4 3 9 9 H 1.07998 * 120.00440 * 359.97438 * 8 7 4 10 10 C 1.37882 * 119.99875 * 180.02562 * 8 7 4 11 11 N 1.31519 * 119.99813 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00324 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47498 * 89.99484 * 12 10 8 14 14 H 1.48497 * 109.47133 * 210.00183 * 12 10 8 15 15 H 1.48502 * 109.46696 * 329.99922 * 12 10 8 16 16 C 1.46900 * 111.00134 * 65.51317 * 3 2 1 17 17 H 1.09003 * 109.46646 * 38.59637 * 16 3 2 18 18 C 1.52990 * 109.46897 * 158.59292 * 16 3 2 19 19 C 1.53001 * 109.47041 * 278.59739 * 16 3 2 20 20 C 1.53001 * 117.49511 * 242.40283 * 19 16 3 21 21 C 1.53001 * 117.49747 * 173.74450 * 19 16 3 22 22 H 1.08999 * 109.47330 * 49.66893 * 1 2 3 23 23 H 1.08997 * 109.47046 * 169.67092 * 1 2 3 24 24 H 1.09001 * 109.47537 * 289.66962 * 1 2 3 25 25 H 1.08992 * 109.47159 * 239.99912 * 2 1 3 26 26 H 1.09000 * 109.47298 * 119.99723 * 2 1 3 27 27 H 1.08993 * 109.47478 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.46369 * 300.00685 * 6 4 3 29 29 H 1.09002 * 109.46805 * 59.99705 * 6 4 3 30 30 H 1.09003 * 109.47677 * 184.99588 * 7 4 3 31 31 H 1.08997 * 109.47585 * 304.99776 * 7 4 3 32 32 H 0.96999 * 119.99793 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.47554 * 299.99756 * 18 16 3 34 34 H 1.09003 * 109.47191 * 60.00678 * 18 16 3 35 35 H 1.09007 * 109.46933 * 179.97438 * 18 16 3 36 36 H 1.08994 * 115.55036 * 28.07485 * 19 16 3 37 37 H 1.09002 * 117.49665 * 359.97438 * 20 19 16 38 38 H 1.09003 * 117.49859 * 145.02327 * 20 19 16 39 39 H 1.08998 * 117.49588 * 214.97772 * 21 19 16 40 40 H 1.09005 * 117.49683 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4704 1.4305 -0.2256 5 1 3.8235 2.4558 -0.1144 6 6 4.1739 0.5352 0.7965 7 6 3.7826 0.9340 -1.6387 8 6 3.1924 1.8856 -2.6472 9 1 2.6485 2.7570 -2.3138 10 6 3.3457 1.6431 -3.9959 11 7 2.8301 2.4732 -4.8761 12 14 4.2845 0.1347 -4.5729 13 1 3.3443 -1.0042 -4.7279 14 1 4.9316 0.4237 -5.8778 15 1 5.3239 -0.2144 -3.5714 16 6 1.6591 2.0709 1.2481 17 1 1.7577 1.3788 2.0844 18 6 2.5916 3.2649 1.4615 19 6 0.2129 2.5625 1.1605 20 6 -0.0261 4.0718 1.2370 21 6 -0.4022 3.1761 2.4199 22 1 -0.3634 0.6651 -0.7834 23 1 -0.3633 -1.0110 -0.1843 24 1 -0.3634 0.3459 0.9677 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.2503 0.5686 0.6288 28 1 3.9513 0.8889 1.8032 29 1 3.8208 -0.4900 0.6853 30 1 4.8628 0.8835 -1.7757 31 1 3.3519 -0.0573 -1.7790 32 1 2.9377 2.3024 -5.8248 33 1 3.6220 2.9146 1.5239 34 1 2.4931 3.9570 0.6252 35 1 2.3239 3.7740 2.3874 36 1 -0.4427 1.9813 0.5121 37 1 0.8471 4.7144 1.3501 38 1 -0.8392 4.4836 0.6391 39 1 -1.4625 2.9989 2.5998 40 1 0.2234 3.2292 3.3110 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695801467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:45 Heat of formation + Delta-G solvation = 36.540372 kcal Electronic energy + Delta-G solvation = -16849.349826 eV Core-core repulsion = 14472.509702 eV Total energy + Delta-G solvation = -2376.840124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.30542 -36.46482 -32.94118 -31.83074 -30.83218 -27.78502 -27.31683 -24.34989 -22.91893 -22.09358 -21.75094 -19.24489 -18.10345 -16.52156 -16.06338 -15.30172 -14.96450 -14.24903 -14.03735 -13.93373 -13.03123 -12.55087 -12.28393 -12.07817 -11.86316 -11.72932 -11.69748 -11.54916 -11.35109 -11.05083 -10.87578 -10.73908 -10.64203 -10.26423 -9.96490 -9.77860 -9.58989 -9.45682 -9.42209 -8.95368 -8.38079 -7.43078 -5.87115 -3.80488 3.37429 3.45159 3.47515 4.05136 4.51549 4.57442 5.04001 5.20448 5.33534 5.46032 5.49469 5.57694 5.64039 5.66583 5.72374 5.80476 5.86328 5.87457 5.97023 5.99138 6.06972 6.09580 6.20300 6.34617 6.36408 6.42284 6.52754 6.55813 6.60683 6.67427 6.73324 6.87464 7.19891 7.39964 7.88279 7.93232 8.04563 8.76972 9.26639 9.76228 11.26959 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029210 B = 0.008431 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.349596 B = 3320.139412 C = 3488.390075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 N -0.501 5.501 4 C 0.088 3.912 5 H 0.086 0.914 6 C -0.188 4.188 7 C -0.007 4.007 8 C -0.486 4.486 9 H 0.079 0.921 10 C 0.061 3.939 11 N -0.908 5.908 12 Si 0.871 3.129 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.269 1.269 16 C 0.113 3.887 17 H 0.035 0.965 18 C -0.157 4.157 19 C -0.142 4.142 20 C -0.180 4.180 21 C -0.192 4.192 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.021 0.979 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.259 0.741 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 -2.135 13.892 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.076 4.076 3 N -0.225 5.225 4 C -0.020 4.020 5 H 0.104 0.896 6 C -0.247 4.247 7 C -0.045 4.045 8 C -0.525 4.525 9 H 0.098 0.902 10 C -0.138 4.138 11 N -0.549 5.549 12 Si 0.699 3.301 13 H -0.207 1.207 14 H -0.217 1.217 15 H -0.194 1.194 16 C 0.005 3.995 17 H 0.053 0.947 18 C -0.214 4.214 19 C -0.160 4.160 20 C -0.217 4.217 21 C -0.230 4.230 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.305 -1.856 13.305 13.835 hybrid contribution 0.820 -1.274 0.186 1.526 sum -2.485 -3.129 13.492 14.071 Atomic orbital electron populations 1.22075 0.96154 1.00943 1.01809 1.22091 0.95140 0.90026 1.00326 1.62081 1.13953 1.14398 1.32031 1.21858 0.85211 0.99279 0.95628 0.89634 1.22614 1.01381 1.01123 0.99572 1.19708 0.96003 0.96779 0.91991 1.21058 1.32818 1.09370 0.89233 0.90245 1.25010 0.95743 0.96052 0.97033 1.69916 1.46574 1.37173 1.01227 0.86925 0.80811 0.84297 0.78040 1.20654 1.21687 1.19368 1.21026 0.92566 0.94864 0.91065 0.94703 1.22217 0.99284 0.98545 1.01382 1.22852 0.97553 0.95897 0.99691 1.23068 1.03264 0.94232 1.01130 1.22950 1.00631 1.06555 0.92827 0.91178 0.93435 0.92753 0.90062 0.96055 0.92678 0.93776 0.92944 0.96575 0.97043 0.93160 0.92063 0.90888 0.93187 0.85965 0.88429 0.89400 0.89506 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.31 37.16 0.31 -2.01 16 2 C 0.05 0.90 4.60 -3.82 -0.02 0.88 16 3 N -0.50 -9.35 4.11 -218.72 -0.90 -10.25 16 4 C 0.09 1.72 1.74 -67.71 -0.12 1.61 16 5 H 0.09 1.72 5.60 -51.93 -0.29 1.43 16 6 C -0.19 -3.07 8.13 37.16 0.30 -2.76 16 7 C -0.01 -0.18 3.45 -27.88 -0.10 -0.27 16 8 C -0.49 -13.79 9.39 -34.44 -0.32 -14.11 16 9 H 0.08 2.47 7.99 -52.49 -0.42 2.05 16 10 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 11 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 12 Si 0.87 22.05 27.47 -169.99 -4.67 17.38 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 15 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 16 C 0.11 1.78 1.77 -67.72 -0.12 1.66 16 17 H 0.04 0.54 7.49 -51.93 -0.39 0.15 16 18 C -0.16 -2.33 6.47 37.15 0.24 -2.09 16 19 C -0.14 -2.09 4.70 -90.62 -0.43 -2.52 16 20 C -0.18 -2.48 9.49 -26.69 -0.25 -2.74 16 21 C -0.19 -2.35 9.98 -26.69 -0.27 -2.62 16 22 H 0.07 1.18 7.40 -51.93 -0.38 0.80 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.74 6.05 -51.93 -0.31 0.43 16 25 H 0.08 1.57 6.02 -51.93 -0.31 1.26 16 26 H 0.02 0.34 6.60 -51.93 -0.34 0.00 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.65 6.55 -51.93 -0.34 0.31 16 29 H 0.05 0.84 6.54 -51.93 -0.34 0.50 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.27 5.60 -51.93 -0.29 -0.02 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.06 0.90 5.30 -51.93 -0.28 0.62 16 34 H 0.07 1.21 7.21 -51.93 -0.37 0.83 16 35 H 0.05 0.63 7.21 -51.93 -0.37 0.26 16 36 H 0.12 1.91 4.56 -51.93 -0.24 1.67 16 37 H 0.10 1.33 5.81 -51.93 -0.30 1.03 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.99 8.01 -51.93 -0.42 0.57 16 LS Contribution 291.81 15.07 4.40 4.40 Total: -1.00 -30.09 291.81 -7.90 -37.99 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.63 Total: 1.44 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -0.87 Total: -23.28 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -0.13 Total: -37.92 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.09 -7.90 -37.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695801467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.529 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds