Wall clock time and date at job start Mon Mar 30 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46911 * 109.46753 * 2 1 4 4 C 1.46893 * 110.99660 * 189.46700 * 3 2 1 5 5 H 1.09002 * 109.47240 * 186.04600 * 4 3 2 6 6 C 1.53005 * 109.47684 * 306.04628 * 4 3 2 7 7 C 1.52999 * 109.47306 * 66.04402 * 4 3 2 8 8 C 1.50701 * 109.46817 * 64.99996 * 7 4 3 9 9 H 1.07998 * 120.00440 * 359.97438 * 8 7 4 10 10 C 1.37882 * 119.99875 * 180.02562 * 8 7 4 11 11 N 1.31519 * 119.99813 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00324 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47498 * 89.99484 * 12 10 8 14 14 H 1.48497 * 109.47133 * 210.00183 * 12 10 8 15 15 H 1.48502 * 109.46696 * 329.99922 * 12 10 8 16 16 C 1.46900 * 111.00134 * 65.51317 * 3 2 1 17 17 H 1.09003 * 109.46646 * 38.59637 * 16 3 2 18 18 C 1.52990 * 109.46897 * 158.59292 * 16 3 2 19 19 C 1.53001 * 109.47041 * 278.59739 * 16 3 2 20 20 C 1.53001 * 117.49511 * 242.40283 * 19 16 3 21 21 C 1.53001 * 117.49747 * 173.74450 * 19 16 3 22 22 H 1.08999 * 109.47330 * 49.66893 * 1 2 3 23 23 H 1.08997 * 109.47046 * 169.67092 * 1 2 3 24 24 H 1.09001 * 109.47537 * 289.66962 * 1 2 3 25 25 H 1.08992 * 109.47159 * 239.99912 * 2 1 3 26 26 H 1.09000 * 109.47298 * 119.99723 * 2 1 3 27 27 H 1.08993 * 109.47478 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.46369 * 300.00685 * 6 4 3 29 29 H 1.09002 * 109.46805 * 59.99705 * 6 4 3 30 30 H 1.09003 * 109.47677 * 184.99588 * 7 4 3 31 31 H 1.08997 * 109.47585 * 304.99776 * 7 4 3 32 32 H 0.96999 * 119.99793 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.47554 * 299.99756 * 18 16 3 34 34 H 1.09003 * 109.47191 * 60.00678 * 18 16 3 35 35 H 1.09007 * 109.46933 * 179.97438 * 18 16 3 36 36 H 1.08994 * 115.55036 * 28.07485 * 19 16 3 37 37 H 1.09002 * 117.49665 * 359.97438 * 20 19 16 38 38 H 1.09003 * 117.49859 * 145.02327 * 20 19 16 39 39 H 1.08998 * 117.49588 * 214.97772 * 21 19 16 40 40 H 1.09005 * 117.49683 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4704 1.4305 -0.2256 5 1 3.8235 2.4558 -0.1144 6 6 4.1739 0.5352 0.7965 7 6 3.7826 0.9340 -1.6387 8 6 3.1924 1.8856 -2.6472 9 1 2.6485 2.7570 -2.3138 10 6 3.3457 1.6431 -3.9959 11 7 2.8301 2.4732 -4.8761 12 14 4.2845 0.1347 -4.5729 13 1 3.3443 -1.0042 -4.7279 14 1 4.9316 0.4237 -5.8778 15 1 5.3239 -0.2144 -3.5714 16 6 1.6591 2.0709 1.2481 17 1 1.7577 1.3788 2.0844 18 6 2.5916 3.2649 1.4615 19 6 0.2129 2.5625 1.1605 20 6 -0.0261 4.0718 1.2370 21 6 -0.4022 3.1761 2.4199 22 1 -0.3634 0.6651 -0.7834 23 1 -0.3633 -1.0110 -0.1843 24 1 -0.3634 0.3459 0.9677 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.2503 0.5686 0.6288 28 1 3.9513 0.8889 1.8032 29 1 3.8208 -0.4900 0.6853 30 1 4.8628 0.8835 -1.7757 31 1 3.3519 -0.0573 -1.7790 32 1 2.9377 2.3024 -5.8248 33 1 3.6220 2.9146 1.5239 34 1 2.4931 3.9570 0.6252 35 1 2.3239 3.7740 2.3874 36 1 -0.4427 1.9813 0.5121 37 1 0.8471 4.7144 1.3501 38 1 -0.8392 4.4836 0.6391 39 1 -1.4625 2.9989 2.5998 40 1 0.2234 3.2292 3.3110 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695801467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:45 Heat of formation + Delta-G solvation = 18.203467 kcal Electronic energy + Delta-G solvation = -16850.144974 eV Core-core repulsion = 14472.509702 eV Total energy + Delta-G solvation = -2377.635272 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61228 -37.72671 -34.92316 -33.40041 -32.28098 -29.58705 -28.61626 -25.61090 -24.64614 -23.37763 -23.08680 -20.57202 -19.50605 -18.74377 -17.32393 -16.68569 -16.41135 -15.98328 -15.34587 -15.25904 -14.72542 -14.15686 -14.02748 -13.50419 -13.32651 -13.14784 -12.98059 -12.84744 -12.61072 -12.55860 -12.44072 -12.01670 -11.92623 -11.75009 -11.67823 -11.34745 -11.27168 -11.08811 -10.74562 -10.65671 -10.57871 -8.78799 -8.15115 -6.13033 1.36539 1.38006 1.48865 2.42871 2.90839 3.17163 3.30676 3.90680 4.07406 4.15677 4.25939 4.29661 4.34614 4.44318 4.48868 4.54937 4.57556 4.70687 4.75996 4.81647 4.86018 4.92655 5.00463 5.02736 5.14036 5.17217 5.22167 5.26510 5.32858 5.35514 5.39449 5.41768 5.51804 5.64806 5.78682 6.44392 6.57204 6.64551 6.95457 7.47075 9.02404 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029210 B = 0.008431 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.349596 B = 3320.139412 C = 3488.390075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.530 5.530 4 C 0.091 3.909 5 H 0.073 0.927 6 C -0.177 4.177 7 C -0.005 4.005 8 C -0.483 4.483 9 H 0.035 0.965 10 C -0.004 4.004 11 N -0.959 5.959 12 Si 0.941 3.059 13 H -0.273 1.273 14 H -0.289 1.289 15 H -0.248 1.248 16 C 0.117 3.883 17 H 0.050 0.950 18 C -0.152 4.152 19 C -0.164 4.164 20 C -0.194 4.194 21 C -0.160 4.160 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.018 0.982 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.641 -3.764 16.216 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 N -0.254 5.254 4 C -0.017 4.017 5 H 0.091 0.909 6 C -0.236 4.236 7 C -0.043 4.043 8 C -0.521 4.521 9 H 0.053 0.947 10 C -0.199 4.199 11 N -0.602 5.602 12 Si 0.766 3.234 13 H -0.199 1.199 14 H -0.216 1.216 15 H -0.172 1.172 16 C 0.009 3.991 17 H 0.068 0.932 18 C -0.209 4.209 19 C -0.183 4.183 20 C -0.231 4.231 21 C -0.197 4.197 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.875 -3.490 15.658 16.298 hybrid contribution 0.615 -0.665 -0.521 1.045 sum -2.260 -4.156 15.138 15.860 Atomic orbital electron populations 1.21997 0.94826 1.01414 1.01883 1.22086 0.96247 0.89322 0.99933 1.61990 1.13379 1.15577 1.34481 1.21645 0.86646 0.99211 0.94205 0.90877 1.22466 1.01301 1.00438 0.99358 1.19657 0.95447 0.95681 0.93469 1.21277 1.31681 1.08712 0.90468 0.94673 1.25928 0.97104 0.99550 0.97272 1.70090 1.48806 1.39678 1.01594 0.85793 0.79796 0.80027 0.77772 1.19884 1.21556 1.17172 1.21057 0.93105 0.94931 0.90004 0.93241 1.22161 0.99323 0.97960 1.01446 1.22820 0.97191 0.96299 1.01942 1.23114 1.03354 0.93855 1.02782 1.23015 1.01615 1.03116 0.91998 0.93828 0.91720 0.90949 0.92691 0.93958 0.91977 0.91682 0.92467 0.96422 0.96704 0.93191 0.91946 0.93630 0.90672 0.87176 0.88607 0.89781 0.87929 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.31 71.98 0.60 -3.62 16 2 C 0.05 1.72 4.60 86.30 0.40 2.12 16 3 N -0.53 -19.54 4.11 -845.91 -3.48 -23.02 16 4 C 0.09 3.50 1.74 44.92 0.08 3.58 16 5 H 0.07 2.96 5.60 -2.39 -0.01 2.95 16 6 C -0.18 -5.28 8.13 71.98 0.59 -4.69 16 7 C -0.01 -0.24 3.45 29.85 0.10 -0.14 16 8 C -0.48 -28.21 9.39 25.60 0.24 -27.97 16 9 H 0.03 2.31 7.99 -2.91 -0.02 2.28 16 10 C 0.00 -0.24 5.47 84.66 0.46 0.22 16 11 N -0.96 -62.15 13.96 21.45 0.30 -61.85 16 12 Si 0.94 45.74 27.47 68.60 1.88 47.62 16 13 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 15 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 16 C 0.12 3.49 1.77 44.91 0.08 3.56 16 17 H 0.05 1.34 7.49 -2.39 -0.02 1.32 16 18 C -0.15 -4.32 6.47 71.98 0.47 -3.86 16 19 C -0.16 -4.65 4.70 -10.79 -0.05 -4.70 16 20 C -0.19 -5.20 9.49 30.62 0.29 -4.91 16 21 C -0.16 -3.45 9.98 30.62 0.31 -3.15 16 22 H 0.04 1.49 7.40 -2.39 -0.02 1.47 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 1.84 6.05 -2.39 -0.01 1.83 16 25 H 0.05 2.09 6.02 -2.39 -0.01 2.08 16 26 H 0.04 1.22 6.60 -2.39 -0.02 1.21 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.68 6.55 -2.39 -0.02 1.66 16 29 H 0.06 1.65 6.54 -2.39 -0.02 1.64 16 30 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 31 H 0.01 0.69 5.60 -2.39 -0.01 0.68 16 32 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 33 H 0.06 1.74 5.30 -2.39 -0.01 1.72 16 34 H 0.04 1.53 7.21 -2.39 -0.02 1.52 16 35 H 0.07 1.73 7.21 -2.38 -0.02 1.71 16 36 H 0.11 3.39 4.56 -2.39 -0.01 3.38 16 37 H 0.10 2.57 5.81 -2.39 -0.01 2.56 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.10 1.91 8.01 -2.38 -0.02 1.90 16 Total: -1.00 -66.62 291.81 3.21 -63.41 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.95 Total: 17.38 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 3.56 Total: -43.55 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -3.18 Total: -84.86 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Total: -66.62 3.21 -63.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695801467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.614 kcal (2) G-P(sol) polarization free energy of solvation -66.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds