Wall clock time and date at job start Mon Mar 30 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47299 * 2 1 4 4 C 1.46902 * 111.00149 * 164.53859 * 3 2 1 5 5 H 1.08997 * 109.47092 * 168.43510 * 4 3 2 6 6 C 1.53001 * 109.46854 * 48.43093 * 4 3 2 7 7 C 1.53001 * 109.46925 * 288.43180 * 4 3 2 8 8 C 1.52997 * 117.49753 * 248.62426 * 7 4 3 9 9 C 1.52999 * 117.49805 * 179.97438 * 7 4 3 10 10 C 1.46905 * 111.00005 * 288.49053 * 3 2 1 11 11 H 1.08997 * 109.47315 * 208.52920 * 10 3 2 12 12 C 1.53002 * 109.47073 * 328.53120 * 10 3 2 13 13 C 1.53002 * 109.47086 * 88.52610 * 10 3 2 14 14 C 1.50696 * 109.47018 * 64.12986 * 13 10 3 15 15 H 1.08004 * 120.00372 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00112 * 180.02562 * 14 13 10 17 17 N 1.31518 * 119.99926 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00162 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46971 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47415 * 119.99771 * 18 16 14 21 21 H 1.48501 * 109.47174 * 239.99947 * 18 16 14 22 22 H 1.09000 * 109.47092 * 192.39715 * 1 2 3 23 23 H 1.08998 * 109.46919 * 312.39719 * 1 2 3 24 24 H 1.09000 * 109.47197 * 72.39919 * 1 2 3 25 25 H 1.09003 * 109.46701 * 239.99754 * 2 1 3 26 26 H 1.09004 * 109.47221 * 120.00194 * 2 1 3 27 27 H 1.08998 * 109.47094 * 306.69702 * 6 4 3 28 28 H 1.08998 * 109.47007 * 66.69920 * 6 4 3 29 29 H 1.09002 * 109.46326 * 186.69439 * 6 4 3 30 30 H 1.09005 * 115.54651 * 34.33053 * 7 4 3 31 31 H 1.09002 * 117.49880 * 359.97438 * 8 7 4 32 32 H 1.09000 * 117.50278 * 145.02465 * 8 7 4 33 33 H 1.08996 * 117.49548 * 214.98071 * 9 7 4 34 34 H 1.08995 * 117.49663 * 359.97438 * 9 7 4 35 35 H 1.08998 * 109.47568 * 67.10325 * 12 10 3 36 36 H 1.09005 * 109.47165 * 187.11212 * 12 10 3 37 37 H 1.09004 * 109.46923 * 307.10921 * 12 10 3 38 38 H 1.09000 * 109.46914 * 184.13176 * 13 10 3 39 39 H 1.09007 * 109.47028 * 304.13328 * 13 10 3 40 40 H 0.96996 * 119.99896 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4414 1.4407 0.3656 5 1 3.8303 2.4382 0.1613 6 6 4.2200 0.4114 -0.4562 7 6 3.5976 1.1277 1.8551 8 6 4.0418 2.2677 2.7737 9 6 5.0138 1.1353 2.4339 10 6 1.7851 2.0263 -1.3007 11 1 2.5437 2.7902 -1.4712 12 6 1.8623 0.9745 -2.4092 13 6 0.3988 2.6736 -1.3075 14 6 0.3554 3.7786 -0.2837 15 1 1.2292 3.9976 0.3119 16 6 -0.8000 4.5100 -0.1074 17 7 -1.8641 4.2437 -0.8331 18 14 -0.8537 5.8802 1.1610 19 1 0.4635 5.9782 1.8398 20 1 -1.1606 7.1672 0.4869 21 1 -1.9067 5.5841 2.1653 22 1 -0.3633 -1.0037 0.2206 23 1 -0.3633 0.6929 0.7589 24 1 -0.3633 0.3107 -0.9796 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.7565 -0.5687 -0.3442 28 1 4.2080 0.7012 -1.5069 29 1 5.2503 0.3687 -0.1029 30 1 2.8929 0.4008 2.2591 31 1 4.2233 3.2406 2.3168 32 1 3.6294 2.2911 3.7824 33 1 5.2405 0.4141 3.2190 34 1 5.8343 1.3629 1.7534 35 1 1.0267 0.2814 -2.3113 36 1 1.8145 1.4665 -3.3808 37 1 2.8007 0.4263 -2.3253 38 1 0.1951 3.0857 -2.2958 39 1 -0.3537 1.9233 -1.0644 40 1 -2.6768 4.7585 -0.7093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695801469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:47 Heat of formation + Delta-G solvation = 30.915306 kcal Electronic energy + Delta-G solvation = -16842.884945 eV Core-core repulsion = 14465.800900 eV Total energy + Delta-G solvation = -2377.084045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.19828 -36.52301 -32.93765 -31.24137 -30.69770 -27.78598 -27.23086 -23.55591 -23.33442 -22.05838 -21.74537 -19.22849 -18.49775 -16.37541 -16.00381 -15.23985 -14.49482 -14.18426 -14.06910 -13.61858 -12.99941 -12.48288 -12.18352 -12.08149 -11.72595 -11.61340 -11.51037 -11.34613 -11.14202 -11.07619 -10.85384 -10.71263 -10.45184 -10.18180 -10.14467 -9.93644 -9.68104 -9.45820 -9.09597 -8.78614 -8.13175 -7.31511 -5.80478 -3.76179 3.42106 3.49571 3.54881 4.03373 4.58788 4.63296 4.97129 5.19649 5.31135 5.53606 5.56024 5.58168 5.64912 5.71383 5.79529 5.84664 5.87875 5.95191 5.98776 6.10307 6.15552 6.22237 6.27504 6.36044 6.40336 6.46030 6.55124 6.64101 6.66327 6.78224 7.13330 7.17266 7.66433 7.85005 8.04501 8.18338 8.22552 8.70177 9.28874 9.83914 11.31757 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.009898 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.903612 B = 2828.192536 C = 3558.975320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.501 5.501 4 C 0.111 3.889 5 H 0.076 0.924 6 C -0.186 4.186 7 C -0.128 4.128 8 C -0.172 4.172 9 C -0.189 4.189 10 C 0.089 3.911 11 H 0.058 0.942 12 C -0.188 4.188 13 C 0.022 3.978 14 C -0.479 4.479 15 H 0.057 0.943 16 C 0.049 3.951 17 N -0.905 5.905 18 Si 0.885 3.115 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.288 1.288 22 H 0.037 0.963 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.011 0.989 39 H 0.037 0.963 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.793 -8.451 2.386 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 N -0.223 5.223 4 C 0.002 3.998 5 H 0.094 0.906 6 C -0.245 4.245 7 C -0.147 4.147 8 C -0.209 4.209 9 C -0.227 4.227 10 C -0.019 4.019 11 H 0.077 0.923 12 C -0.246 4.246 13 C -0.016 4.016 14 C -0.518 4.518 15 H 0.075 0.925 16 C -0.150 4.150 17 N -0.547 5.547 18 Si 0.714 3.286 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.214 1.214 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.055 0.945 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.343 -8.118 2.719 13.427 hybrid contribution 0.303 0.389 0.142 0.513 sum 10.646 -7.730 2.861 13.464 Atomic orbital electron populations 1.21999 0.94935 0.99844 1.03881 1.22145 0.96326 0.90067 0.99331 1.62299 1.13569 1.15520 1.30960 1.21295 0.88955 0.98051 0.91518 0.90571 1.22680 1.00506 1.00692 1.00595 1.22229 0.96183 1.01559 0.94688 1.22924 1.03230 0.94245 1.00526 1.22942 0.93603 1.02592 1.03548 1.21920 1.01682 0.93854 0.84446 0.92335 1.22747 1.00896 1.00720 1.00284 1.19429 0.89803 0.95839 0.96480 1.21170 0.97353 1.14514 1.18752 0.92524 1.24974 0.96052 0.97648 0.96313 1.69972 1.02393 1.41353 1.40970 0.86639 0.77811 0.82293 0.81839 1.19883 1.21583 1.21434 0.94383 0.90924 0.91593 0.94665 0.92445 0.92353 0.92257 0.92938 0.87887 0.88865 0.89286 0.89454 0.89281 0.92235 0.93106 0.93324 0.97033 0.94504 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.39 37.16 0.31 -2.39 16 2 C 0.05 0.82 3.75 -3.83 -0.01 0.81 16 3 N -0.50 -9.38 4.00 -218.71 -0.87 -10.26 16 4 C 0.11 1.77 2.47 -67.71 -0.17 1.61 16 5 H 0.08 1.31 7.38 -51.93 -0.38 0.92 16 6 C -0.19 -2.51 7.77 37.16 0.29 -2.22 16 7 C -0.13 -1.88 5.08 -90.62 -0.46 -2.34 16 8 C -0.17 -2.44 10.18 -26.70 -0.27 -2.71 16 9 C -0.19 -2.30 9.65 -26.70 -0.26 -2.56 16 10 C 0.09 1.80 2.07 -67.71 -0.14 1.66 16 11 H 0.06 1.22 7.43 -51.93 -0.39 0.84 16 12 C -0.19 -3.23 7.60 37.16 0.28 -2.95 16 13 C 0.02 0.55 4.35 -27.88 -0.12 0.42 16 14 C -0.48 -13.49 8.82 -34.44 -0.30 -13.79 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 16 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 17 N -0.91 -27.51 13.29 55.43 0.74 -26.78 16 18 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 24 H 0.07 1.29 4.73 -51.93 -0.25 1.05 16 25 H 0.04 0.55 4.50 -51.93 -0.23 0.32 16 26 H 0.06 0.88 6.34 -51.93 -0.33 0.55 16 27 H 0.06 0.77 6.20 -51.93 -0.32 0.45 16 28 H 0.06 0.81 5.86 -51.93 -0.30 0.51 16 29 H 0.05 0.63 7.07 -51.93 -0.37 0.26 16 30 H 0.10 1.56 6.74 -51.93 -0.35 1.21 16 31 H 0.09 1.37 8.05 -51.93 -0.42 0.96 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 35 H 0.06 1.02 5.42 -51.93 -0.28 0.74 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.74 4.52 -51.93 -0.23 0.50 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.04 0.97 4.59 -51.92 -0.24 0.73 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -29.51 295.00 -8.23 -37.73 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.56 Total: 0.65 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -0.95 Total: -23.15 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.14 Total: -37.03 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.51 -8.23 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695801469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.647 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds