Wall clock time and date at job start Mon Mar 30 2020 02:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.53000 * 109.47052 * 120.00122 * 2 1 3 5 5 C 1.53006 * 109.46944 * 175.00102 * 4 2 1 6 6 H 1.09004 * 115.54920 * 29.32812 * 5 4 2 7 7 C 1.52998 * 117.51845 * 243.63003 * 5 4 2 8 8 C 1.52999 * 117.49773 * 174.99903 * 5 4 2 9 9 H 1.08995 * 117.49656 * 0.02562 * 8 5 4 10 10 N 1.46901 * 117.49553 * 214.99997 * 8 5 4 11 11 C 1.46908 * 110.99611 * 155.00153 * 10 8 5 12 12 H 1.09000 * 109.46973 * 35.00427 * 11 10 8 13 13 C 1.52996 * 109.47004 * 274.99818 * 11 10 8 14 14 C 1.52996 * 109.46833 * 155.00030 * 11 10 8 15 15 C 1.50702 * 109.47159 * 294.99820 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 H 1.09007 * 109.47170 * 299.99721 * 1 2 3 24 24 H 1.08997 * 109.47493 * 59.99607 * 1 2 3 25 25 H 1.09003 * 109.47213 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46866 * 240.00483 * 2 1 3 27 27 H 1.08999 * 109.47338 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47327 * 300.00494 * 3 2 1 29 29 H 1.09002 * 109.47331 * 59.99874 * 3 2 1 30 30 H 1.08999 * 109.47241 * 55.00269 * 4 2 1 31 31 H 1.09000 * 109.47256 * 294.99756 * 4 2 1 32 32 H 1.09000 * 117.50145 * 145.02381 * 7 5 4 33 33 H 1.08999 * 117.49697 * 0.02562 * 7 5 4 34 34 H 1.00896 * 110.99985 * 278.95731 * 10 8 5 35 35 H 1.08993 * 109.47136 * 300.00279 * 13 11 10 36 36 H 1.09001 * 109.47101 * 60.00413 * 13 11 10 37 37 H 1.09000 * 109.46774 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.47066 * 175.00023 * 14 11 10 39 39 H 1.08994 * 109.47405 * 54.99853 * 14 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1879 6 1 4.0719 -0.0352 0.6423 7 6 4.1702 -2.2343 1.1151 8 6 4.2802 -1.4197 2.4056 9 1 3.6645 -1.7291 3.2501 10 7 5.5980 -0.8691 2.7497 11 6 5.8912 -1.0585 4.1767 12 1 5.4684 -2.0056 4.5119 13 6 5.2750 0.0882 4.9806 14 6 7.4064 -1.0731 4.3883 15 6 7.9987 -2.2739 3.6968 16 1 7.3585 -2.9581 3.1596 17 6 9.3587 -2.4958 3.7445 18 7 10.1383 -1.6625 4.3983 19 14 10.0937 -3.9801 2.8808 20 1 9.7930 -3.9068 1.4284 21 1 11.5650 -3.9916 3.0822 22 1 9.5075 -5.2222 3.4456 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1370 32 1 5.0755 -2.3617 0.5215 33 1 3.4821 -3.0796 1.1104 34 1 6.3209 -1.2752 2.1749 35 1 5.6978 1.0352 4.6453 36 1 4.1955 0.0986 4.8298 37 1 5.4930 -0.0522 6.0393 38 1 7.6238 -1.1244 5.4553 39 1 7.8402 -0.1638 3.9725 40 1 11.0951 -1.8189 4.4322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:21 Heat of formation + Delta-G solvation = -13.595488 kcal Electronic energy + Delta-G solvation = -15641.324469 eV Core-core repulsion = 13262.310291 eV Total energy + Delta-G solvation = -2379.014178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.38893 -36.18740 -34.44543 -32.35113 -29.01297 -27.37238 -27.25275 -26.65931 -23.11927 -21.45805 -20.30578 -19.85238 -19.29611 -16.32977 -15.69443 -15.10413 -14.82692 -14.36336 -13.98651 -13.81956 -13.15207 -12.76048 -12.47752 -12.24339 -12.12670 -11.78968 -11.58153 -11.49120 -11.21720 -11.11867 -11.04938 -10.81908 -10.73396 -10.55729 -10.45817 -10.45642 -9.85167 -9.64446 -9.13317 -9.06462 -8.39001 -7.45628 -6.02441 -4.05679 3.31108 3.36114 3.38079 4.16370 4.43409 4.58017 4.90440 4.93005 5.02945 5.28122 5.34268 5.37802 5.52862 5.56900 5.59663 5.72564 5.77915 5.87275 5.91064 6.00059 6.01724 6.07864 6.15333 6.19648 6.24714 6.32784 6.39179 6.41414 6.57974 6.66316 6.94421 6.96315 7.56030 7.64384 7.97101 8.08385 8.27811 8.37871 9.00427 9.58501 11.08452 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036207 B = 0.005286 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.152335 B = 5295.667085 C = 5733.728108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.080 4.080 5 C -0.151 4.151 6 H 0.106 0.894 7 C -0.209 4.209 8 C 0.041 3.959 9 H 0.098 0.902 10 N -0.652 5.652 11 C 0.089 3.911 12 H 0.031 0.969 13 C -0.135 4.135 14 C 0.019 3.981 15 C -0.525 4.525 16 H 0.052 0.948 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.357 0.643 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.047 0.953 38 H 0.022 0.978 39 H 0.026 0.974 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 2.475 -6.655 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.118 4.118 5 C -0.170 4.170 6 H 0.124 0.876 7 C -0.248 4.248 8 C -0.071 4.071 9 H 0.116 0.884 10 N -0.285 5.285 11 C -0.020 4.020 12 H 0.049 0.951 13 C -0.193 4.193 14 C -0.018 4.018 15 C -0.564 4.564 16 H 0.070 0.930 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.179 0.821 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.767 3.156 -6.496 17.343 hybrid contribution 0.714 -1.827 -0.481 2.019 sum -15.053 1.330 -6.977 16.644 Atomic orbital electron populations 1.21852 0.95717 1.01404 1.01483 1.21067 0.95006 0.96516 0.98624 1.21884 1.01755 0.95740 1.01165 1.21192 0.93212 0.99896 0.97491 1.22645 0.94231 0.96484 1.03658 0.87572 1.23569 1.03269 0.94359 1.03616 1.22543 0.94312 0.99450 0.90805 0.88400 1.60296 1.01738 1.60092 1.06357 1.21650 0.99132 0.94991 0.86251 0.95105 1.21800 0.98967 0.99721 0.98783 1.19289 0.87687 0.97438 0.97371 1.21154 0.92289 1.09463 1.33448 0.92995 1.24987 0.97315 0.96369 0.95392 1.69954 1.04609 1.36593 1.41852 0.86694 0.78063 0.83284 0.80167 1.20218 1.21260 1.20348 0.92817 0.92981 0.92947 0.91341 0.91995 0.93297 0.92826 0.92356 0.91868 0.88954 0.89576 0.82059 0.92697 0.94415 0.93358 0.95979 0.95609 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.09 -0.96 2.92 -90.62 -0.26 -1.22 16 3 C -0.15 -1.52 9.01 37.16 0.33 -1.19 16 4 C -0.08 -0.93 4.96 -26.73 -0.13 -1.06 16 5 C -0.15 -2.11 5.45 -90.62 -0.49 -2.60 16 6 H 0.11 1.57 6.38 -51.93 -0.33 1.23 16 7 C -0.21 -3.09 9.88 -26.73 -0.26 -3.35 16 8 C 0.04 0.67 5.74 -67.71 -0.39 0.28 16 9 H 0.10 1.59 7.77 -51.93 -0.40 1.19 16 10 N -0.65 -12.83 6.59 -99.74 -0.66 -13.49 16 11 C 0.09 1.88 2.49 -67.71 -0.17 1.71 16 12 H 0.03 0.67 7.73 -51.93 -0.40 0.26 16 13 C -0.13 -2.48 9.42 37.16 0.35 -2.13 16 14 C 0.02 0.50 4.57 -27.88 -0.13 0.37 16 15 C -0.53 -14.50 8.12 -34.44 -0.28 -14.78 16 16 H 0.05 1.40 7.49 -52.49 -0.39 1.00 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.70 6.40 -51.93 -0.33 0.36 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.65 7.88 -51.93 -0.41 0.24 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 33 H 0.09 1.15 8.03 -51.93 -0.42 0.73 16 34 H 0.36 7.63 6.99 -39.29 -0.27 7.35 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -28.36 320.65 -8.89 -37.24 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.59 Total: 4.07 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -1.19 Total: -23.28 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.08 Total: -39.33 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.36 -8.89 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.647 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds