Wall clock time and date at job start Mon Mar 30 2020 02:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.53000 * 109.47052 * 120.00122 * 2 1 3 5 5 C 1.53006 * 109.46944 * 175.00102 * 4 2 1 6 6 H 1.09004 * 115.54920 * 29.32812 * 5 4 2 7 7 C 1.52998 * 117.51845 * 243.63003 * 5 4 2 8 8 C 1.52999 * 117.49773 * 174.99903 * 5 4 2 9 9 H 1.08995 * 117.49656 * 0.02562 * 8 5 4 10 10 N 1.46901 * 117.49553 * 214.99997 * 8 5 4 11 11 C 1.46908 * 110.99611 * 155.00153 * 10 8 5 12 12 H 1.09000 * 109.46973 * 35.00427 * 11 10 8 13 13 C 1.52996 * 109.47004 * 274.99818 * 11 10 8 14 14 C 1.52996 * 109.46833 * 155.00030 * 11 10 8 15 15 C 1.50702 * 109.47159 * 294.99820 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 H 1.09007 * 109.47170 * 299.99721 * 1 2 3 24 24 H 1.08997 * 109.47493 * 59.99607 * 1 2 3 25 25 H 1.09003 * 109.47213 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46866 * 240.00483 * 2 1 3 27 27 H 1.08999 * 109.47338 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47327 * 300.00494 * 3 2 1 29 29 H 1.09002 * 109.47331 * 59.99874 * 3 2 1 30 30 H 1.08999 * 109.47241 * 55.00269 * 4 2 1 31 31 H 1.09000 * 109.47256 * 294.99756 * 4 2 1 32 32 H 1.09000 * 117.50145 * 145.02381 * 7 5 4 33 33 H 1.08999 * 117.49697 * 0.02562 * 7 5 4 34 34 H 1.00896 * 110.99985 * 278.95731 * 10 8 5 35 35 H 1.08993 * 109.47136 * 300.00279 * 13 11 10 36 36 H 1.09001 * 109.47101 * 60.00413 * 13 11 10 37 37 H 1.09000 * 109.46774 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.47066 * 175.00023 * 14 11 10 39 39 H 1.08994 * 109.47405 * 54.99853 * 14 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1879 6 1 4.0719 -0.0352 0.6423 7 6 4.1702 -2.2343 1.1151 8 6 4.2802 -1.4197 2.4056 9 1 3.6645 -1.7291 3.2501 10 7 5.5980 -0.8691 2.7497 11 6 5.8912 -1.0585 4.1767 12 1 5.4684 -2.0056 4.5119 13 6 5.2750 0.0882 4.9806 14 6 7.4064 -1.0731 4.3883 15 6 7.9987 -2.2739 3.6968 16 1 7.3585 -2.9581 3.1596 17 6 9.3587 -2.4958 3.7445 18 7 10.1383 -1.6625 4.3983 19 14 10.0937 -3.9801 2.8808 20 1 9.7930 -3.9068 1.4284 21 1 11.5650 -3.9916 3.0822 22 1 9.5075 -5.2222 3.4456 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1370 32 1 5.0755 -2.3617 0.5215 33 1 3.4821 -3.0796 1.1104 34 1 6.3209 -1.2752 2.1749 35 1 5.6978 1.0352 4.6453 36 1 4.1955 0.0986 4.8298 37 1 5.4930 -0.0522 6.0393 38 1 7.6238 -1.1244 5.4553 39 1 7.8402 -0.1638 3.9725 40 1 11.0951 -1.8189 4.4322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:21 Heat of formation + Delta-G solvation = -29.017375 kcal Electronic energy + Delta-G solvation = -15641.993212 eV Core-core repulsion = 13262.310291 eV Total energy + Delta-G solvation = -2379.682921 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62567 -37.51031 -35.78715 -34.36034 -30.52954 -29.29668 -28.00380 -27.69399 -25.13381 -22.63762 -21.49142 -21.28471 -20.51702 -18.50917 -16.94385 -16.77326 -16.07064 -15.92941 -15.21147 -14.82903 -14.63984 -14.14972 -13.67483 -13.52774 -13.31531 -13.24740 -12.98398 -12.96034 -12.69714 -12.60166 -12.45296 -12.36990 -12.31337 -11.84760 -11.63677 -11.47933 -11.37374 -11.07990 -11.03554 -10.63679 -10.57283 -8.94985 -8.20114 -6.30954 1.39178 1.41198 1.49082 2.39680 2.92246 3.12790 3.33571 3.96454 3.99906 4.05319 4.18488 4.26273 4.35921 4.41843 4.57998 4.63938 4.68902 4.80202 4.85098 4.90790 4.94150 5.00665 5.02042 5.07287 5.15545 5.20301 5.21312 5.32810 5.34281 5.45620 5.48544 5.54816 5.58465 5.62561 5.82883 6.19980 6.45855 6.61282 6.83929 7.37887 8.91418 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036207 B = 0.005286 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.152335 B = 5295.667085 C = 5733.728108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.131 4.131 6 H 0.097 0.903 7 C -0.203 4.203 8 C 0.016 3.984 9 H 0.104 0.896 10 N -0.657 5.657 11 C 0.098 3.902 12 H 0.026 0.974 13 C -0.126 4.126 14 C 0.026 3.974 15 C -0.536 4.536 16 H 0.057 0.943 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.343 0.657 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.053 0.947 38 H -0.004 1.004 39 H -0.004 1.004 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.527 1.622 -7.761 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.114 4.114 5 C -0.150 4.150 6 H 0.115 0.885 7 C -0.242 4.242 8 C -0.095 4.095 9 H 0.121 0.879 10 N -0.288 5.288 11 C -0.012 4.012 12 H 0.045 0.955 13 C -0.184 4.184 14 C -0.011 4.011 15 C -0.574 4.574 16 H 0.075 0.925 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.195 1.195 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.163 0.837 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.558 2.307 -7.606 19.273 hybrid contribution 1.243 -1.531 -0.138 1.977 sum -16.316 0.776 -7.744 18.077 Atomic orbital electron populations 1.21820 0.94306 1.01984 1.02051 1.21048 0.96147 0.96073 0.97747 1.21883 1.00809 0.96109 1.01763 1.21200 0.91155 1.00731 0.98283 1.22657 0.95662 0.95713 1.00966 0.88459 1.23605 1.03373 0.95483 1.01762 1.22636 0.93049 1.01791 0.91994 0.87863 1.60355 1.02843 1.60597 1.05007 1.21452 0.95838 0.95997 0.87868 0.95545 1.21706 1.00136 0.98046 0.98538 1.19148 0.91068 0.95645 0.95244 1.21493 0.92748 1.09909 1.33274 0.92483 1.25895 0.97883 0.99432 0.96105 1.70091 1.04934 1.38641 1.43372 0.85569 0.77105 0.79492 0.79282 1.19153 1.20966 1.19467 0.92608 0.92114 0.92381 0.91492 0.93435 0.92162 0.92829 0.91391 0.91798 0.89908 0.87705 0.83665 0.93376 0.92053 0.92779 0.98535 0.98532 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.19 71.98 0.66 -1.46 16 2 C -0.09 -1.66 2.92 -10.80 -0.03 -1.69 16 3 C -0.15 -2.79 9.01 71.98 0.65 -2.14 16 4 C -0.08 -1.58 4.96 30.60 0.15 -1.43 16 5 C -0.13 -3.44 5.45 -10.79 -0.06 -3.50 16 6 H 0.10 2.78 6.38 -2.39 -0.02 2.76 16 7 C -0.20 -5.68 9.88 30.59 0.30 -5.37 16 8 C 0.02 0.51 5.74 44.92 0.26 0.77 16 9 H 0.10 3.17 7.77 -2.39 -0.02 3.15 16 10 N -0.66 -25.86 6.59 -469.46 -3.09 -28.95 16 11 C 0.10 4.16 2.49 44.91 0.11 4.27 16 12 H 0.03 1.14 7.73 -2.39 -0.02 1.12 16 13 C -0.13 -4.57 9.42 71.98 0.68 -3.89 16 14 C 0.03 1.40 4.57 29.85 0.14 1.54 16 15 C -0.54 -30.04 8.12 25.60 0.21 -29.83 16 16 H 0.06 3.07 7.49 -2.91 -0.02 3.05 16 17 C 0.01 0.29 5.46 84.66 0.46 0.76 16 18 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 19 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.02 6.40 -2.39 -0.02 1.00 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.30 7.88 -2.39 -0.02 1.28 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 2.48 8.09 -2.39 -0.02 2.46 16 33 H 0.10 2.53 8.03 -2.39 -0.02 2.51 16 34 H 0.34 14.87 6.99 -89.70 -0.63 14.24 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 39 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -60.83 320.65 3.09 -57.74 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.34 Total: 23.36 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 3.53 Total: -41.98 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -2.81 Total: -85.30 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -60.83 3.09 -57.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.723 kcal (2) G-P(sol) polarization free energy of solvation -60.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds