Wall clock time and date at job start Mon Mar 30 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47232 * 2 1 4 4 C 1.53007 * 109.47511 * 120.00101 * 2 1 3 5 5 C 1.52989 * 109.47407 * 175.00146 * 4 2 1 6 6 H 1.09004 * 115.56709 * 29.30779 * 5 4 2 7 7 C 1.53000 * 117.50008 * 243.62046 * 5 4 2 8 8 C 1.52997 * 60.00347 * 252.51154 * 7 5 4 9 9 H 1.08999 * 117.49685 * 252.51237 * 8 7 5 10 10 N 1.46893 * 117.50042 * 107.48559 * 8 7 5 11 11 C 1.46899 * 110.99831 * 136.38084 * 10 8 7 12 12 H 1.08998 * 109.47714 * 325.00188 * 11 10 8 13 13 C 1.53005 * 109.47132 * 85.00169 * 11 10 8 14 14 C 1.53010 * 109.47289 * 204.99791 * 11 10 8 15 15 C 1.50701 * 109.46530 * 64.99913 * 14 11 10 16 16 H 1.08000 * 120.00207 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99653 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00146 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00100 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47108 * 90.00104 * 19 17 15 21 21 H 1.48500 * 109.47260 * 210.00657 * 19 17 15 22 22 H 1.48508 * 109.47134 * 330.00335 * 19 17 15 23 23 H 1.08999 * 109.47149 * 299.99582 * 1 2 3 24 24 H 1.09001 * 109.47412 * 60.00538 * 1 2 3 25 25 H 1.09004 * 109.47467 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47420 * 239.99752 * 2 1 3 27 27 H 1.08998 * 109.47285 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47216 * 299.99983 * 3 2 1 29 29 H 1.09004 * 109.47389 * 60.00304 * 3 2 1 30 30 H 1.09004 * 109.46886 * 54.99597 * 4 2 1 31 31 H 1.09002 * 109.46769 * 295.00633 * 4 2 1 32 32 H 1.09002 * 117.49696 * 0.02562 * 7 5 4 33 33 H 1.09002 * 117.50343 * 145.02258 * 7 5 4 34 34 H 1.00895 * 111.00362 * 260.33224 * 10 8 7 35 35 H 1.08992 * 109.47176 * 299.99789 * 13 11 10 36 36 H 1.08999 * 109.47301 * 60.00047 * 13 11 10 37 37 H 1.09003 * 109.47192 * 180.02562 * 13 11 10 38 38 H 1.08995 * 109.47040 * 185.00031 * 14 11 10 39 39 H 1.08997 * 109.46645 * 305.00132 * 14 11 10 40 40 H 0.96996 * 120.00315 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 4.0721 -0.0355 0.6421 7 6 4.1697 -2.2345 1.1154 8 6 4.2802 -1.4197 2.4056 9 1 5.2581 -1.0114 2.6608 10 7 3.4505 -1.8362 3.5440 11 6 4.2212 -1.8106 4.7943 12 1 5.2515 -2.1031 4.5922 13 6 4.1978 -0.3968 5.3790 14 6 3.6008 -2.7869 5.7959 15 6 3.7344 -4.1943 5.2740 16 1 4.2141 -4.3744 4.3232 17 6 3.2451 -5.2520 6.0107 18 7 2.6614 -5.0327 7.1686 19 14 3.4112 -6.9967 5.3641 20 1 4.6913 -7.5808 5.8390 21 1 2.2780 -7.8184 5.8600 22 1 3.3964 -6.9778 3.8792 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1370 32 1 3.4813 -3.0796 1.1109 33 1 5.0749 -2.3623 0.5218 34 1 2.6233 -1.2631 3.6174 35 1 4.6397 0.2987 4.6656 36 1 3.1675 -0.1042 5.5812 37 1 4.7701 -0.3777 6.3065 38 1 4.1173 -2.7034 6.7521 39 1 2.5460 -2.5478 5.9306 40 1 2.3169 -5.7768 7.6867 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:24 Heat of formation + Delta-G solvation = -7.544408 kcal Electronic energy + Delta-G solvation = -15854.411227 eV Core-core repulsion = 13475.659443 eV Total energy + Delta-G solvation = -2378.751784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.52163 -36.05674 -34.43782 -32.26836 -28.71801 -27.29075 -27.16916 -27.06948 -23.04673 -21.35966 -20.48909 -19.73510 -19.30149 -16.16464 -15.83179 -15.10326 -14.68282 -14.32642 -13.78033 -13.72652 -13.20687 -12.74371 -12.58305 -12.34775 -12.12243 -11.79883 -11.68291 -11.54273 -11.41533 -11.01435 -10.90580 -10.76577 -10.57197 -10.49346 -10.44476 -10.04263 -9.99764 -9.51622 -9.12642 -8.91230 -8.20909 -7.41165 -5.83154 -3.80273 3.42279 3.48158 3.53714 4.15960 4.60928 4.63676 4.81502 4.92729 4.99588 5.30784 5.37701 5.51526 5.53303 5.58257 5.66105 5.75745 5.78622 5.81086 5.87186 5.88346 6.01552 6.07075 6.07739 6.13707 6.18884 6.28674 6.40457 6.43092 6.53472 6.65922 6.66508 7.07875 7.63590 7.74661 8.08807 8.11873 8.22838 8.65753 9.25400 9.80810 11.29092 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.006155 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.353930 B = 4548.093954 C = 4897.603984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.080 4.080 5 C -0.173 4.173 6 H 0.097 0.903 7 C -0.170 4.170 8 C 0.032 3.968 9 H 0.089 0.911 10 N -0.631 5.631 11 C 0.090 3.910 12 H 0.065 0.935 13 C -0.179 4.179 14 C 0.033 3.967 15 C -0.486 4.486 16 H 0.059 0.941 17 C 0.049 3.951 18 N -0.905 5.905 19 Si 0.889 3.111 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.275 1.275 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.333 0.667 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 11.551 -12.616 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.118 4.118 5 C -0.192 4.192 6 H 0.115 0.885 7 C -0.209 4.209 8 C -0.080 4.080 9 H 0.106 0.894 10 N -0.261 5.261 11 C -0.019 4.019 12 H 0.083 0.917 13 C -0.238 4.238 14 C -0.005 4.005 15 C -0.524 4.524 16 H 0.077 0.923 17 C -0.150 4.150 18 N -0.547 5.547 19 Si 0.717 3.283 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.200 1.200 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.153 0.847 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.413 10.781 -12.555 16.554 hybrid contribution 0.158 -0.079 -0.117 0.212 sum -0.255 10.702 -12.672 16.589 Atomic orbital electron populations 1.21844 0.95495 1.01807 1.01376 1.21069 0.95326 0.96033 0.98726 1.21887 1.01101 0.96212 1.01239 1.21092 0.92782 1.00946 0.96954 1.22714 0.95506 0.97317 1.03660 0.88487 1.23213 1.02344 0.94272 1.01046 1.22455 0.97127 1.01134 0.87252 0.89366 1.60268 1.07340 1.56444 1.02072 1.21868 0.97323 0.93106 0.89621 0.91692 1.22587 1.01294 0.99028 1.00926 1.19115 0.95875 0.93158 0.92317 1.21164 1.35949 0.90918 1.04406 0.92298 1.25005 0.95992 0.98892 0.95116 1.69964 1.40577 1.31031 1.13094 0.86643 0.77261 0.85180 0.79167 1.21067 1.21589 1.19967 0.92729 0.93121 0.92587 0.91390 0.92584 0.93272 0.92847 0.91056 0.92058 0.88325 0.89811 0.84673 0.94385 0.93114 0.92537 0.96449 0.96561 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.19 37.15 0.34 -1.12 16 2 C -0.09 -0.98 2.92 -90.62 -0.26 -1.25 16 3 C -0.15 -1.41 9.01 37.16 0.33 -1.07 16 4 C -0.08 -1.01 4.04 -26.73 -0.11 -1.12 16 5 C -0.17 -2.28 5.52 -90.62 -0.50 -2.78 16 6 H 0.10 1.15 6.38 -51.93 -0.33 0.82 16 7 C -0.17 -2.56 10.10 -26.73 -0.27 -2.83 16 8 C 0.03 0.51 5.95 -67.71 -0.40 0.10 16 9 H 0.09 1.38 7.77 -51.93 -0.40 0.97 16 10 N -0.63 -11.98 6.02 -99.74 -0.60 -12.58 16 11 C 0.09 1.85 2.43 -67.71 -0.16 1.69 16 12 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 13 C -0.18 -3.06 9.16 37.16 0.34 -2.72 16 14 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 15 C -0.49 -13.94 8.84 -34.44 -0.30 -14.24 16 16 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 17 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 18 N -0.91 -27.82 13.29 55.43 0.74 -27.09 16 19 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.53 6.41 -51.93 -0.33 0.20 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.01 7.88 -51.93 -0.41 0.61 16 31 H 0.06 0.79 7.33 -51.93 -0.38 0.41 16 32 H 0.10 1.65 8.03 -51.93 -0.42 1.23 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.33 5.97 6.80 -39.29 -0.27 5.70 16 35 H 0.04 0.57 8.07 -51.93 -0.42 0.15 16 36 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -29.97 319.44 -8.85 -38.82 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.55 Total: 1.86 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -1.23 Total: -23.29 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.14 Total: -39.67 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.97 -8.85 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.271 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds