Wall clock time and date at job start Mon Mar 30 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47232 * 2 1 4 4 C 1.53007 * 109.47511 * 120.00101 * 2 1 3 5 5 C 1.52989 * 109.47407 * 175.00146 * 4 2 1 6 6 H 1.09004 * 115.56709 * 29.30779 * 5 4 2 7 7 C 1.53000 * 117.50008 * 243.62046 * 5 4 2 8 8 C 1.52997 * 60.00347 * 252.51154 * 7 5 4 9 9 H 1.08999 * 117.49685 * 252.51237 * 8 7 5 10 10 N 1.46893 * 117.50042 * 107.48559 * 8 7 5 11 11 C 1.46899 * 110.99831 * 136.38084 * 10 8 7 12 12 H 1.08998 * 109.47714 * 325.00188 * 11 10 8 13 13 C 1.53005 * 109.47132 * 85.00169 * 11 10 8 14 14 C 1.53010 * 109.47289 * 204.99791 * 11 10 8 15 15 C 1.50701 * 109.46530 * 64.99913 * 14 11 10 16 16 H 1.08000 * 120.00207 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99653 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00146 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00100 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47108 * 90.00104 * 19 17 15 21 21 H 1.48500 * 109.47260 * 210.00657 * 19 17 15 22 22 H 1.48508 * 109.47134 * 330.00335 * 19 17 15 23 23 H 1.08999 * 109.47149 * 299.99582 * 1 2 3 24 24 H 1.09001 * 109.47412 * 60.00538 * 1 2 3 25 25 H 1.09004 * 109.47467 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47420 * 239.99752 * 2 1 3 27 27 H 1.08998 * 109.47285 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47216 * 299.99983 * 3 2 1 29 29 H 1.09004 * 109.47389 * 60.00304 * 3 2 1 30 30 H 1.09004 * 109.46886 * 54.99597 * 4 2 1 31 31 H 1.09002 * 109.46769 * 295.00633 * 4 2 1 32 32 H 1.09002 * 117.49696 * 0.02562 * 7 5 4 33 33 H 1.09002 * 117.50343 * 145.02258 * 7 5 4 34 34 H 1.00895 * 111.00362 * 260.33224 * 10 8 7 35 35 H 1.08992 * 109.47176 * 299.99789 * 13 11 10 36 36 H 1.08999 * 109.47301 * 60.00047 * 13 11 10 37 37 H 1.09003 * 109.47192 * 180.02562 * 13 11 10 38 38 H 1.08995 * 109.47040 * 185.00031 * 14 11 10 39 39 H 1.08997 * 109.46645 * 305.00132 * 14 11 10 40 40 H 0.96996 * 120.00315 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 4.0721 -0.0355 0.6421 7 6 4.1697 -2.2345 1.1154 8 6 4.2802 -1.4197 2.4056 9 1 5.2581 -1.0114 2.6608 10 7 3.4505 -1.8362 3.5440 11 6 4.2212 -1.8106 4.7943 12 1 5.2515 -2.1031 4.5922 13 6 4.1978 -0.3968 5.3790 14 6 3.6008 -2.7869 5.7959 15 6 3.7344 -4.1943 5.2740 16 1 4.2141 -4.3744 4.3232 17 6 3.2451 -5.2520 6.0107 18 7 2.6614 -5.0327 7.1686 19 14 3.4112 -6.9967 5.3641 20 1 4.6913 -7.5808 5.8390 21 1 2.2780 -7.8184 5.8600 22 1 3.3964 -6.9778 3.8792 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1370 32 1 3.4813 -3.0796 1.1109 33 1 5.0749 -2.3623 0.5218 34 1 2.6233 -1.2631 3.6174 35 1 4.6397 0.2987 4.6656 36 1 3.1675 -0.1042 5.5812 37 1 4.7701 -0.3777 6.3065 38 1 4.1173 -2.7034 6.7521 39 1 2.5460 -2.5478 5.9306 40 1 2.3169 -5.7768 7.6867 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:24 Heat of formation + Delta-G solvation = -24.373317 kcal Electronic energy + Delta-G solvation = -15855.140983 eV Core-core repulsion = 13475.659443 eV Total energy + Delta-G solvation = -2379.481540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.73769 -37.36691 -35.74760 -34.35494 -30.38317 -29.00010 -28.17915 -27.94258 -25.09197 -22.53122 -21.63417 -21.35051 -20.37006 -18.37176 -17.01742 -16.66637 -16.12737 -15.74543 -15.15565 -14.75011 -14.61833 -14.23694 -13.98839 -13.47518 -13.28668 -13.25171 -13.16396 -12.97026 -12.72881 -12.46842 -12.45828 -12.36841 -11.93195 -11.88487 -11.62987 -11.40470 -11.32326 -11.16763 -10.92520 -10.57367 -10.47960 -8.84651 -8.09381 -6.13974 1.40613 1.41918 1.53440 2.47573 2.98691 3.20233 3.33099 3.79682 4.02553 4.12540 4.22790 4.30689 4.35509 4.37830 4.52716 4.55577 4.60749 4.81493 4.84857 4.89136 4.94804 4.99379 5.02420 5.09915 5.17183 5.20809 5.22781 5.29667 5.34810 5.45411 5.51515 5.57122 5.59785 5.70593 5.90366 6.36480 6.54779 6.73295 6.99896 7.51480 9.02817 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.006155 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.353930 B = 4548.093954 C = 4897.603984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.080 4.080 5 C -0.142 4.142 6 H 0.122 0.878 7 C -0.178 4.178 8 C 0.012 3.988 9 H 0.097 0.903 10 N -0.650 5.650 11 C 0.101 3.899 12 H 0.058 0.942 13 C -0.168 4.168 14 C 0.037 3.963 15 C -0.497 4.497 16 H 0.054 0.946 17 C -0.007 4.007 18 N -0.941 5.941 19 Si 0.957 3.043 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.270 1.270 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.336 0.664 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.056 0.944 38 H -0.007 1.007 39 H -0.010 1.010 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 12.417 -14.443 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.118 4.118 5 C -0.161 4.161 6 H 0.139 0.861 7 C -0.216 4.216 8 C -0.099 4.099 9 H 0.115 0.885 10 N -0.280 5.280 11 C -0.009 4.009 12 H 0.076 0.924 13 C -0.227 4.227 14 C 0.000 4.000 15 C -0.536 4.536 16 H 0.072 0.928 17 C -0.203 4.203 18 N -0.583 5.583 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.194 1.194 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.011 0.989 39 H 0.008 0.992 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.121 11.655 -14.397 18.524 hybrid contribution -0.028 -0.342 0.443 0.560 sum 0.094 11.313 -13.954 17.964 Atomic orbital electron populations 1.21845 0.95110 1.01540 1.02040 1.21034 0.95684 0.96606 0.97411 1.21868 1.01272 0.95228 1.01843 1.21089 0.92492 1.00042 0.98148 1.22766 0.95646 0.96721 1.00993 0.86061 1.23236 1.02965 0.94598 1.00828 1.22502 0.97596 1.03016 0.86763 0.88511 1.60078 1.07979 1.57696 1.02291 1.21512 0.96255 0.93752 0.89361 0.92368 1.22430 1.01721 0.97114 1.01414 1.19000 0.94292 0.93870 0.92866 1.21473 1.35519 0.92465 1.04119 0.92770 1.25862 0.95725 1.03318 0.95351 1.70091 1.41562 1.32340 1.14347 0.85571 0.77568 0.79958 0.78639 1.20021 1.21125 1.19435 0.92888 0.91644 0.93366 0.91196 0.92246 0.91979 0.93004 0.93233 0.92336 0.90597 0.87966 0.84356 0.91594 0.93009 0.92499 0.98887 0.99209 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.19 71.98 0.66 -2.03 16 2 C -0.09 -1.69 2.92 -10.80 -0.03 -1.72 16 3 C -0.14 -2.34 9.01 71.98 0.65 -1.70 16 4 C -0.08 -1.93 4.04 30.59 0.12 -1.80 16 5 C -0.14 -3.45 5.52 -10.80 -0.06 -3.51 16 6 H 0.12 2.43 6.38 -2.38 -0.02 2.41 16 7 C -0.18 -5.11 10.10 30.59 0.31 -4.80 16 8 C 0.01 0.37 5.95 44.92 0.27 0.63 16 9 H 0.10 2.81 7.77 -2.39 -0.02 2.79 16 10 N -0.65 -24.59 6.02 -469.46 -2.83 -27.41 16 11 C 0.10 4.15 2.43 44.92 0.11 4.26 16 12 H 0.06 2.46 7.73 -2.39 -0.02 2.44 16 13 C -0.17 -5.55 9.16 71.98 0.66 -4.89 16 14 C 0.04 1.99 4.65 29.85 0.14 2.13 16 15 C -0.50 -29.08 8.84 25.60 0.23 -28.85 16 16 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 17 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 18 N -0.94 -58.96 13.29 21.45 0.28 -58.68 16 19 Si 0.96 46.56 29.54 68.60 2.03 48.59 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.06 0.92 6.41 -2.39 -0.02 0.90 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.05 1.41 7.88 -2.39 -0.02 1.39 16 31 H 0.06 1.45 7.33 -2.39 -0.02 1.43 16 32 H 0.08 2.53 8.03 -2.39 -0.02 2.52 16 33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.34 12.02 6.80 -89.70 -0.61 11.41 16 35 H 0.07 1.82 8.07 -2.39 -0.02 1.80 16 36 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -64.70 319.44 3.36 -61.34 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.36 Total: 18.40 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 3.52 Total: -42.23 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.54 Total: -86.09 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -64.70 3.36 -61.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.966 kcal (2) G-P(sol) polarization free energy of solvation -64.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds