Wall clock time and date at job start Mon Mar 30 2020 02:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47246 * 2 1 4 4 C 1.53005 * 109.46511 * 119.99310 * 2 1 3 5 5 C 1.50703 * 109.46770 * 185.00161 * 4 2 1 6 6 H 1.08005 * 120.00295 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99973 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00166 * 359.72595 * 7 5 4 9 9 Si 1.86802 * 120.00104 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47320 * 179.72392 * 9 7 5 11 11 H 1.48501 * 109.46997 * 299.72499 * 9 7 5 12 12 H 1.48500 * 109.47256 * 59.72266 * 9 7 5 13 13 N 1.46897 * 109.47321 * 239.98964 * 2 1 3 14 14 C 1.46903 * 110.99744 * 99.82173 * 13 2 1 15 15 C 1.52992 * 109.47224 * 303.91842 * 14 13 2 16 16 C 1.53004 * 109.46964 * 63.91502 * 14 13 2 17 17 C 1.52994 * 109.47341 * 183.91355 * 14 13 2 18 18 C 1.53783 * 113.61144 * 42.51349 * 17 14 13 19 19 C 1.53778 * 87.08108 * 220.01891 * 18 17 14 20 20 C 1.53773 * 87.08271 * 25.43252 * 19 18 17 21 21 H 1.09002 * 109.47098 * 182.09331 * 1 2 3 22 22 H 1.08993 * 109.47420 * 302.10120 * 1 2 3 23 23 H 1.09002 * 109.46863 * 62.10441 * 1 2 3 24 24 H 1.09000 * 109.47326 * 65.00584 * 4 2 1 25 25 H 1.08999 * 109.47507 * 305.00017 * 4 2 1 26 26 H 0.96998 * 119.99791 * 0.27049 * 8 7 5 27 27 H 1.00903 * 111.00235 * 223.77281 * 13 2 1 28 28 H 1.09007 * 109.47201 * 56.01603 * 15 14 13 29 29 H 1.09001 * 109.47375 * 176.01909 * 15 14 13 30 30 H 1.09005 * 109.47325 * 296.02231 * 15 14 13 31 31 H 1.09000 * 109.47027 * 53.78705 * 16 14 13 32 32 H 1.09003 * 109.47310 * 173.77870 * 16 14 13 33 33 H 1.08999 * 109.47573 * 293.78348 * 16 14 13 34 34 H 1.09002 * 112.85250 * 173.81771 * 17 14 13 35 35 H 1.09003 * 113.61750 * 334.57108 * 18 17 14 36 36 H 1.09002 * 113.61309 * 105.47165 * 18 17 14 37 37 H 1.09007 * 113.61349 * 270.88444 * 19 18 17 38 38 H 1.08998 * 113.61585 * 139.98869 * 19 18 17 39 39 H 1.09001 * 113.61965 * 220.01821 * 20 19 18 40 40 H 1.09003 * 113.68894 * 89.12708 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5418 -0.6148 1.3130 6 1 4.0790 -0.0861 0.5394 7 6 4.2303 -1.1933 2.3581 8 7 3.5759 -1.8333 3.3025 9 14 6.0919 -1.0609 2.4373 10 1 6.5863 -1.7557 3.6530 11 1 6.6848 -1.6920 1.2309 12 1 6.4845 0.3703 2.4909 13 7 2.0197 -0.6927 -1.1993 14 6 2.4157 0.2683 -2.2374 15 6 1.2372 1.1907 -2.5548 16 6 3.5960 1.1030 -1.7361 17 6 2.8267 -0.4878 -3.5023 18 6 1.8949 -1.6611 -3.8488 19 6 3.1585 -2.4487 -4.2329 20 6 3.9273 -1.5351 -3.2638 21 1 -0.3633 -1.0270 0.0375 22 1 -0.3634 0.5461 0.8705 23 1 -0.3633 0.4808 -0.9083 24 1 1.7515 -1.7714 1.2058 25 1 1.6052 -0.2616 2.1371 26 1 2.6092 -1.9017 3.2616 27 1 2.7815 -1.3141 -0.9722 28 1 0.8989 1.6763 -1.6394 29 1 1.5516 1.9480 -3.2730 30 1 0.4211 0.6051 -2.9782 31 1 4.3957 0.4400 -1.4061 32 1 3.9607 1.7383 -2.5433 33 1 3.2725 1.7255 -0.9018 34 1 3.0290 0.1742 -4.3443 35 1 1.3700 -2.0713 -2.9860 36 1 1.2333 -1.4591 -4.6912 37 1 3.4509 -2.3237 -5.2755 38 1 3.1336 -3.4930 -3.9216 39 1 4.9065 -1.2315 -3.6339 40 1 3.9590 -1.9099 -2.2408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:27 Heat of formation + Delta-G solvation = -3.298131 kcal Electronic energy + Delta-G solvation = -16945.331433 eV Core-core repulsion = 14566.763782 eV Total energy + Delta-G solvation = -2378.567651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.60092 -36.51120 -33.52356 -31.79559 -28.41420 -27.38707 -26.41382 -25.09657 -24.84162 -22.89458 -20.27018 -19.54465 -18.10756 -16.81390 -15.49041 -15.29929 -14.55446 -14.03491 -13.73742 -13.14432 -13.05095 -13.00586 -12.28444 -12.07801 -11.89007 -11.62067 -11.54536 -11.32905 -11.26601 -11.01323 -10.85050 -10.81356 -10.60708 -10.35589 -10.12510 -10.10335 -9.77841 -9.49266 -9.35003 -8.51382 -8.33531 -7.53234 -6.34558 -4.04396 3.42117 3.43256 3.61818 4.53604 4.81584 4.91574 5.04728 5.08959 5.20410 5.42994 5.47661 5.68987 5.75347 5.90308 5.93701 5.97611 6.01092 6.10192 6.18082 6.19677 6.20294 6.24207 6.31175 6.37219 6.46147 6.54899 6.56085 6.66242 6.78132 6.87502 6.94829 6.98739 7.37020 7.44552 8.06081 8.21455 8.34196 8.47436 8.89559 9.68214 11.05414 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.009539 C = 0.008107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.924263 B = 2934.656823 C = 3452.987915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.091 3.909 3 H 0.043 0.957 4 C 0.002 3.998 5 C -0.603 4.603 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.912 5.912 9 Si 1.062 2.938 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.670 5.670 14 C 0.120 3.880 15 C -0.137 4.137 16 C -0.174 4.174 17 C -0.097 4.097 18 C -0.125 4.125 19 C -0.146 4.146 20 C -0.137 4.137 21 H 0.049 0.951 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.269 0.731 27 H 0.353 0.647 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 3.063 -13.199 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 H 0.061 0.939 4 C -0.036 4.036 5 C -0.642 4.642 6 H 0.071 0.929 7 C -0.187 4.187 8 N -0.548 5.548 9 Si 0.891 3.109 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.304 5.304 14 C 0.028 3.972 15 C -0.194 4.194 16 C -0.233 4.233 17 C -0.116 4.116 18 C -0.163 4.163 19 C -0.183 4.183 20 C -0.174 4.174 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.031 0.969 25 H 0.027 0.973 26 H 0.080 0.920 27 H 0.175 0.825 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.497 2.527 -12.542 12.881 hybrid contribution -0.409 0.880 -0.503 1.093 sum -1.907 3.407 -13.045 13.616 Atomic orbital electron populations 1.21982 0.97092 1.01038 0.99716 1.21466 0.92930 0.96850 0.90581 0.93858 1.19514 0.96624 0.95316 0.92131 1.22112 0.91881 1.38478 1.11704 0.92905 1.25744 1.06551 0.93626 0.92797 1.70766 1.10426 1.39849 1.33777 0.83632 0.74865 0.76201 0.76193 1.20832 1.21439 1.21611 1.60787 1.40864 1.19126 1.09643 1.20692 0.93015 0.91448 0.92061 1.21940 0.98082 0.98340 1.01050 1.22521 0.99405 1.00730 1.00613 1.22530 0.97044 0.95263 0.96735 1.22889 0.95742 0.96347 1.01294 1.22800 0.97992 0.98828 0.98678 1.22930 0.96993 0.97087 1.00403 0.93173 0.93984 0.93417 0.96945 0.97312 0.92022 0.82461 0.92270 0.93572 0.92425 0.92008 0.93724 0.92303 0.90159 0.87987 0.93002 0.91230 0.91870 0.92419 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.10 37.16 0.34 -2.18 16 2 C 0.09 1.86 1.75 -67.71 -0.12 1.74 16 3 H 0.04 0.92 5.11 -51.93 -0.27 0.65 16 4 C 0.00 0.04 3.76 -27.88 -0.10 -0.07 16 5 C -0.60 -16.36 8.14 -34.44 -0.28 -16.64 16 6 H 0.05 1.39 5.81 -52.48 -0.31 1.08 16 7 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 8 N -0.91 -27.74 13.65 55.43 0.76 -26.99 16 9 Si 1.06 25.15 29.90 -169.99 -5.08 20.07 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.67 -12.40 4.56 -93.05 -0.42 -12.82 16 14 C 0.12 1.90 0.52 -131.60 -0.07 1.83 16 15 C -0.14 -1.99 7.23 37.15 0.27 -1.72 16 16 C -0.17 -2.93 7.27 37.16 0.27 -2.66 16 17 C -0.10 -1.37 3.03 -89.81 -0.27 -1.64 16 18 C -0.13 -1.71 7.27 -25.92 -0.19 -1.90 16 19 C -0.15 -1.87 8.08 -25.92 -0.21 -2.08 16 20 C -0.14 -1.98 6.90 -25.92 -0.18 -2.16 16 21 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.77 5.79 -51.93 -0.30 0.47 16 24 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 25 H 0.01 0.23 8.00 -51.93 -0.42 -0.18 16 26 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 27 H 0.35 7.31 5.41 -39.29 -0.21 7.10 16 28 H 0.06 0.91 5.45 -51.93 -0.28 0.63 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.82 7.81 -51.93 -0.41 0.41 16 31 H 0.06 1.14 6.78 -51.93 -0.35 0.79 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.08 6.44 -51.93 -0.33 0.74 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.58 7.03 -51.93 -0.37 1.22 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.48 6.29 -51.93 -0.33 1.15 16 LS Contribution 296.37 15.07 4.47 4.47 Total: -1.00 -28.17 296.37 -7.80 -35.97 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.88 Total: 6.39 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -0.64 Total: -27.09 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.33 Total: -39.81 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.17 -7.80 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.671 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds