Wall clock time and date at job start Mon Mar 30 2020 02:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47246 * 2 1 4 4 C 1.53005 * 109.46511 * 119.99310 * 2 1 3 5 5 C 1.50703 * 109.46770 * 185.00161 * 4 2 1 6 6 H 1.08005 * 120.00295 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99973 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00166 * 359.72595 * 7 5 4 9 9 Si 1.86802 * 120.00104 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47320 * 179.72392 * 9 7 5 11 11 H 1.48501 * 109.46997 * 299.72499 * 9 7 5 12 12 H 1.48500 * 109.47256 * 59.72266 * 9 7 5 13 13 N 1.46897 * 109.47321 * 239.98964 * 2 1 3 14 14 C 1.46903 * 110.99744 * 99.82173 * 13 2 1 15 15 C 1.52992 * 109.47224 * 303.91842 * 14 13 2 16 16 C 1.53004 * 109.46964 * 63.91502 * 14 13 2 17 17 C 1.52994 * 109.47341 * 183.91355 * 14 13 2 18 18 C 1.53783 * 113.61144 * 42.51349 * 17 14 13 19 19 C 1.53778 * 87.08108 * 220.01891 * 18 17 14 20 20 C 1.53773 * 87.08271 * 25.43252 * 19 18 17 21 21 H 1.09002 * 109.47098 * 182.09331 * 1 2 3 22 22 H 1.08993 * 109.47420 * 302.10120 * 1 2 3 23 23 H 1.09002 * 109.46863 * 62.10441 * 1 2 3 24 24 H 1.09000 * 109.47326 * 65.00584 * 4 2 1 25 25 H 1.08999 * 109.47507 * 305.00017 * 4 2 1 26 26 H 0.96998 * 119.99791 * 0.27049 * 8 7 5 27 27 H 1.00903 * 111.00235 * 223.77281 * 13 2 1 28 28 H 1.09007 * 109.47201 * 56.01603 * 15 14 13 29 29 H 1.09001 * 109.47375 * 176.01909 * 15 14 13 30 30 H 1.09005 * 109.47325 * 296.02231 * 15 14 13 31 31 H 1.09000 * 109.47027 * 53.78705 * 16 14 13 32 32 H 1.09003 * 109.47310 * 173.77870 * 16 14 13 33 33 H 1.08999 * 109.47573 * 293.78348 * 16 14 13 34 34 H 1.09002 * 112.85250 * 173.81771 * 17 14 13 35 35 H 1.09003 * 113.61750 * 334.57108 * 18 17 14 36 36 H 1.09002 * 113.61309 * 105.47165 * 18 17 14 37 37 H 1.09007 * 113.61349 * 270.88444 * 19 18 17 38 38 H 1.08998 * 113.61585 * 139.98869 * 19 18 17 39 39 H 1.09001 * 113.61965 * 220.01821 * 20 19 18 40 40 H 1.09003 * 113.68894 * 89.12708 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5418 -0.6148 1.3130 6 1 4.0790 -0.0861 0.5394 7 6 4.2303 -1.1933 2.3581 8 7 3.5759 -1.8333 3.3025 9 14 6.0919 -1.0609 2.4373 10 1 6.5863 -1.7557 3.6530 11 1 6.6848 -1.6920 1.2309 12 1 6.4845 0.3703 2.4909 13 7 2.0197 -0.6927 -1.1993 14 6 2.4157 0.2683 -2.2374 15 6 1.2372 1.1907 -2.5548 16 6 3.5960 1.1030 -1.7361 17 6 2.8267 -0.4878 -3.5023 18 6 1.8949 -1.6611 -3.8488 19 6 3.1585 -2.4487 -4.2329 20 6 3.9273 -1.5351 -3.2638 21 1 -0.3633 -1.0270 0.0375 22 1 -0.3634 0.5461 0.8705 23 1 -0.3633 0.4808 -0.9083 24 1 1.7515 -1.7714 1.2058 25 1 1.6052 -0.2616 2.1371 26 1 2.6092 -1.9017 3.2616 27 1 2.7815 -1.3141 -0.9722 28 1 0.8989 1.6763 -1.6394 29 1 1.5516 1.9480 -3.2730 30 1 0.4211 0.6051 -2.9782 31 1 4.3957 0.4400 -1.4061 32 1 3.9607 1.7383 -2.5433 33 1 3.2725 1.7255 -0.9018 34 1 3.0290 0.1742 -4.3443 35 1 1.3700 -2.0713 -2.9860 36 1 1.2333 -1.4591 -4.6912 37 1 3.4509 -2.3237 -5.2755 38 1 3.1336 -3.4930 -3.9216 39 1 4.9065 -1.2315 -3.6339 40 1 3.9590 -1.9099 -2.2408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:26 Heat of formation + Delta-G solvation = -18.804178 kcal Electronic energy + Delta-G solvation = -16946.003826 eV Core-core repulsion = 14566.763782 eV Total energy + Delta-G solvation = -2379.240044 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85846 -37.96412 -35.39843 -33.51691 -29.81094 -29.15205 -27.94117 -26.22731 -25.97764 -24.98475 -21.76607 -20.87092 -19.39749 -18.90233 -16.92442 -16.57780 -15.95798 -15.65658 -15.37025 -14.93742 -14.55016 -14.38812 -13.70531 -13.48058 -13.25609 -13.14197 -12.98148 -12.83252 -12.62649 -12.53461 -12.46916 -12.36825 -12.08697 -12.00416 -11.77397 -11.34775 -11.07993 -10.90840 -10.68332 -10.59591 -10.53097 -9.05277 -8.63658 -6.33484 1.48971 1.56551 1.74840 2.55119 3.16775 3.44296 3.75336 3.90247 3.96130 4.10812 4.20957 4.30965 4.48169 4.55004 4.59883 4.65869 4.77541 4.80170 4.88687 4.93081 4.99252 5.00647 5.08080 5.10334 5.13901 5.15686 5.22115 5.24312 5.35047 5.37915 5.49539 5.53872 5.57805 5.84646 6.05521 6.23820 6.50055 6.60070 6.73078 7.47859 8.76267 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.009539 C = 0.008107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.924263 B = 2934.656823 C = 3452.987915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.101 3.899 3 H 0.038 0.962 4 C 0.006 3.994 5 C -0.602 4.602 6 H 0.060 0.940 7 C -0.038 4.038 8 N -0.941 5.941 9 Si 1.109 2.891 10 H -0.287 1.287 11 H -0.268 1.268 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.115 3.885 15 C -0.133 4.133 16 C -0.169 4.169 17 C -0.091 4.091 18 C -0.123 4.123 19 C -0.136 4.136 20 C -0.144 4.144 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.072 0.928 24 H -0.012 1.012 25 H -0.016 1.016 26 H 0.254 0.746 27 H 0.338 0.662 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 4.072 -15.785 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.008 4.008 3 H 0.055 0.945 4 C -0.031 4.031 5 C -0.640 4.640 6 H 0.079 0.921 7 C -0.236 4.236 8 N -0.579 5.579 9 Si 0.931 3.069 10 H -0.213 1.213 11 H -0.193 1.193 12 H -0.198 1.198 13 N -0.298 5.298 14 C 0.024 3.976 15 C -0.190 4.190 16 C -0.228 4.228 17 C -0.110 4.110 18 C -0.161 4.161 19 C -0.173 4.173 20 C -0.182 4.182 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.006 0.994 25 H 0.002 0.998 26 H 0.064 0.936 27 H 0.159 0.841 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.024 3.554 -15.154 15.599 hybrid contribution -0.588 0.578 0.278 0.870 sum -1.612 4.132 -14.876 15.523 Atomic orbital electron populations 1.21901 0.95017 1.01026 1.01094 1.21281 0.94545 0.95716 0.89290 0.94455 1.19442 0.95878 0.94170 0.93647 1.22458 0.92985 1.37285 1.11301 0.92146 1.27219 1.10746 0.93040 0.92582 1.70903 1.09590 1.42166 1.35291 0.83035 0.69978 0.77193 0.76699 1.21306 1.19296 1.19807 1.60878 1.40362 1.19425 1.09105 1.20881 0.93467 0.91299 0.91981 1.21905 0.97473 0.98469 1.01183 1.22457 0.99075 1.00442 1.00794 1.22563 0.96805 0.95347 0.96243 1.22803 0.96126 0.96105 1.01062 1.22791 0.96880 0.98213 0.99435 1.22899 0.97941 0.98045 0.99268 0.93772 0.93781 0.90936 0.99369 0.99817 0.93648 0.84133 0.93364 0.91244 0.91804 0.94191 0.91092 0.94264 0.87824 0.90308 0.91150 0.88905 0.92280 0.91537 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.10 71.98 0.65 -4.03 16 2 C 0.10 4.17 1.75 44.92 0.08 4.25 16 3 H 0.04 1.59 5.11 -2.39 -0.01 1.58 16 4 C 0.01 0.32 3.76 29.85 0.11 0.43 16 5 C -0.60 -33.34 8.14 25.60 0.21 -33.13 16 6 H 0.06 3.20 5.81 -2.91 -0.02 3.19 16 7 C -0.04 -2.22 5.46 84.66 0.46 -1.76 16 8 N -0.94 -59.03 13.65 21.45 0.29 -58.74 16 9 Si 1.11 50.70 29.90 68.60 2.05 52.76 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.66 -24.48 4.56 -448.30 -2.04 -26.52 16 14 C 0.11 3.44 0.52 3.52 0.00 3.45 16 15 C -0.13 -3.47 7.23 71.98 0.52 -2.95 16 16 C -0.17 -5.44 7.27 71.98 0.52 -4.92 16 17 C -0.09 -2.32 3.03 -10.27 -0.03 -2.35 16 18 C -0.12 -3.07 7.27 31.12 0.23 -2.84 16 19 C -0.14 -3.16 8.08 31.12 0.25 -2.91 16 20 C -0.14 -3.93 6.90 31.12 0.21 -3.72 16 21 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 23 H 0.07 2.20 5.79 -2.39 -0.01 2.19 16 24 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 25 H -0.02 -0.93 8.00 -2.39 -0.02 -0.95 16 26 H 0.25 16.23 7.22 -92.71 -0.67 15.56 16 27 H 0.34 14.28 5.41 -89.69 -0.49 13.80 16 28 H 0.05 1.36 5.45 -2.38 -0.01 1.35 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.60 7.81 -2.38 -0.02 1.58 16 31 H 0.04 1.44 6.78 -2.39 -0.02 1.42 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.40 6.44 -2.39 -0.02 1.38 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.08 2.35 7.03 -2.39 -0.02 2.34 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.95 6.29 -2.39 -0.02 1.93 16 Total: -1.00 -61.71 296.37 4.14 -57.57 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.61 Total: 25.42 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 3.22 Total: -50.48 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.75 Total: -85.26 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.76 kcal Total: -61.71 4.14 -57.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.767 kcal (2) G-P(sol) polarization free energy of solvation -61.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds