Wall clock time and date at job start Mon Mar 30 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47496 * 2 1 4 4 C 1.53007 * 109.46834 * 240.00090 * 2 1 3 5 5 C 1.50705 * 109.47002 * 175.00156 * 4 2 1 6 6 H 1.07999 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99893 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00012 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46764 * 120.00047 * 9 7 5 12 12 H 1.48496 * 109.47167 * 239.99987 * 9 7 5 13 13 N 1.46894 * 109.47457 * 120.00500 * 2 1 3 14 14 C 1.46906 * 110.99934 * 257.66752 * 13 2 1 15 15 C 1.53004 * 109.46930 * 54.61724 * 14 13 2 16 16 C 1.52995 * 109.47137 * 294.61782 * 14 13 2 17 17 C 1.52998 * 109.47230 * 174.61441 * 14 13 2 18 18 C 1.53777 * 113.61622 * 274.94864 * 17 14 13 19 19 C 1.53791 * 87.08174 * 220.01680 * 18 17 14 20 20 C 1.53780 * 87.07659 * 25.43259 * 19 18 17 21 21 H 1.08997 * 109.47305 * 183.24417 * 1 2 3 22 22 H 1.08999 * 109.46782 * 303.24352 * 1 2 3 23 23 H 1.08998 * 109.47342 * 63.24297 * 1 2 3 24 24 H 1.08997 * 109.47310 * 294.99763 * 4 2 1 25 25 H 1.08998 * 109.46810 * 55.00533 * 4 2 1 26 26 H 0.97001 * 119.99672 * 179.97438 * 8 7 5 27 27 H 1.00899 * 111.00959 * 133.71387 * 13 2 1 28 28 H 1.08999 * 109.47018 * 293.25768 * 15 14 13 29 29 H 1.09002 * 109.47043 * 173.25528 * 15 14 13 30 30 H 1.09000 * 109.46962 * 53.25955 * 15 14 13 31 31 H 1.09000 * 109.47191 * 186.60636 * 16 14 13 32 32 H 1.08999 * 109.47138 * 306.60542 * 16 14 13 33 33 H 1.08995 * 109.47337 * 66.60079 * 16 14 13 34 34 H 1.09010 * 112.84808 * 46.25487 * 17 14 13 35 35 H 1.08995 * 113.61557 * 334.56067 * 18 17 14 36 36 H 1.08998 * 113.61799 * 105.47090 * 18 17 14 37 37 H 1.09002 * 113.61186 * 270.88664 * 19 18 17 38 38 H 1.08996 * 113.61032 * 139.97648 * 19 18 17 39 39 H 1.09008 * 113.61301 * 220.02290 * 20 19 18 40 40 H 1.09003 * 113.69574 * 89.12959 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0790 -0.0856 -0.5397 7 6 4.2303 -1.1927 -2.3585 8 7 3.5762 -1.8369 -3.3002 9 14 6.0919 -1.0603 -2.4375 10 1 6.5837 -0.2911 -1.2663 11 1 6.6860 -2.4212 -2.4203 12 1 6.4859 -0.3640 -3.6886 13 7 2.0197 -0.6926 1.1993 14 6 2.4714 0.2684 2.2146 15 6 1.3452 1.2594 2.5154 16 6 3.6923 1.0273 1.6910 17 6 2.8469 -0.4809 3.4946 18 6 1.6503 -0.7574 4.4201 19 6 2.5819 -0.4186 5.5958 20 6 3.3939 0.4319 4.6048 21 1 -0.3634 -1.0260 0.0582 22 1 -0.3633 0.5634 0.8595 23 1 -0.3634 0.4626 -0.9176 24 1 1.7516 -1.7715 -1.2057 25 1 1.6053 -0.2616 -2.1370 26 1 4.0605 -2.2431 -4.0360 27 1 2.7540 -1.3442 0.9663 28 1 1.1594 1.8761 1.6361 29 1 1.6354 1.8963 3.3512 30 1 0.4387 0.7119 2.7735 31 1 4.0982 1.6544 2.4848 32 1 4.4512 0.3152 1.3667 33 1 3.3975 1.6529 0.8486 34 1 3.4662 -1.3578 3.3056 35 1 0.8297 -0.0509 4.2957 36 1 1.3210 -1.7964 4.4094 37 1 3.1280 -1.2792 5.9822 38 1 2.1004 0.1655 6.3800 39 1 4.4723 0.3531 4.7430 40 1 3.0511 1.4640 4.5299 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:28 Heat of formation + Delta-G solvation = 1.036849 kcal Electronic energy + Delta-G solvation = -16728.797835 eV Core-core repulsion = 14350.418163 eV Total energy + Delta-G solvation = -2378.379673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68101 -36.61290 -33.17527 -31.71515 -28.25239 -27.67816 -26.64161 -25.22319 -24.94311 -22.97215 -20.48785 -19.05401 -18.01315 -16.39352 -15.84550 -15.10552 -14.58939 -14.44747 -14.08881 -13.13648 -12.82710 -12.65113 -12.37986 -12.18332 -11.81964 -11.61371 -11.49493 -11.26456 -11.23712 -10.97866 -10.93674 -10.83163 -10.59998 -10.46566 -10.16477 -10.00763 -9.82209 -9.61381 -9.05846 -9.00067 -8.38112 -7.45215 -6.00752 -4.03049 3.28611 3.36908 3.39415 4.44229 4.69748 4.85836 4.93319 5.02797 5.31947 5.39967 5.46378 5.57966 5.71802 5.83703 5.89623 5.99647 6.01793 6.05731 6.07842 6.17649 6.25746 6.28209 6.33137 6.41690 6.43536 6.55391 6.61757 6.66658 6.78509 6.89969 7.01931 7.10120 7.61379 7.69509 8.00690 8.19303 8.38993 8.44393 9.05023 9.61374 11.10423 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029236 B = 0.008102 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.489241 B = 3455.256395 C = 4030.047684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.042 0.958 4 C 0.013 3.987 5 C -0.524 4.524 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.672 5.672 14 C 0.122 3.878 15 C -0.139 4.139 16 C -0.175 4.175 17 C -0.090 4.090 18 C -0.131 4.131 19 C -0.146 4.146 20 C -0.137 4.137 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.259 0.741 27 H 0.352 0.648 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.507 4.423 13.863 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.060 0.940 4 C -0.025 4.025 5 C -0.562 4.562 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.714 3.286 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.305 5.305 14 C 0.030 3.970 15 C -0.196 4.196 16 C -0.234 4.234 17 C -0.109 4.109 18 C -0.168 4.168 19 C -0.183 4.183 20 C -0.175 4.175 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.172 0.828 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.113 4.242 13.961 14.920 hybrid contribution 2.006 0.301 -0.696 2.145 sum -1.107 4.543 13.265 14.065 Atomic orbital electron populations 1.21913 0.97134 1.01045 0.99390 1.21608 0.93044 0.96863 0.90925 0.93981 1.19424 0.95544 0.95995 0.91489 1.21414 0.92262 1.34129 1.08383 0.92068 1.25003 0.98013 0.95361 0.95831 1.69981 1.35275 1.35914 1.11991 0.86637 0.86319 0.77732 0.77915 1.19834 1.21066 1.21124 1.60765 1.41355 1.17327 1.11015 1.20733 0.92750 0.91700 0.91814 1.22069 0.98703 0.98228 1.00614 1.22573 0.99101 1.01099 1.00633 1.22460 0.97378 0.98304 0.92766 1.22981 0.97139 1.01702 0.94992 1.22837 0.98950 0.99853 0.96709 1.22989 0.99297 0.98787 0.96429 0.93067 0.94040 0.93864 0.95994 0.96344 0.93124 0.82779 0.92785 0.93264 0.91801 0.93565 0.92129 0.92208 0.89619 0.89626 0.91917 0.90764 0.92158 0.92123 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.25 37.16 0.34 -2.15 16 2 C 0.08 1.74 1.73 -67.71 -0.12 1.62 16 3 H 0.04 0.89 5.00 -51.93 -0.26 0.63 16 4 C 0.01 0.33 4.43 -27.88 -0.12 0.20 16 5 C -0.52 -14.16 8.17 -34.44 -0.28 -14.44 16 6 H 0.06 1.59 5.38 -52.49 -0.28 1.31 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.67 -12.65 5.94 -93.04 -0.55 -13.20 16 14 C 0.12 1.93 0.63 -131.60 -0.08 1.85 16 15 C -0.14 -2.00 5.87 37.16 0.22 -1.78 16 16 C -0.18 -2.96 7.14 37.16 0.27 -2.70 16 17 C -0.09 -1.27 3.40 -89.81 -0.31 -1.57 16 18 C -0.13 -1.65 7.30 -25.92 -0.19 -1.84 16 19 C -0.15 -1.60 8.08 -25.91 -0.21 -1.81 16 20 C -0.14 -1.64 6.29 -25.92 -0.16 -1.81 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.04 0.67 6.00 -51.93 -0.31 0.36 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.35 7.36 7.39 -39.29 -0.29 7.07 16 28 H 0.05 0.82 6.32 -51.93 -0.33 0.49 16 29 H 0.05 0.62 6.39 -51.93 -0.33 0.29 16 30 H 0.06 0.91 5.94 -51.93 -0.31 0.60 16 31 H 0.05 0.68 7.08 -51.93 -0.37 0.31 16 32 H 0.06 1.13 7.06 -51.93 -0.37 0.77 16 33 H 0.06 1.10 6.51 -51.93 -0.34 0.76 16 34 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 35 H 0.09 1.07 5.58 -51.93 -0.29 0.78 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.08 0.93 6.39 -51.93 -0.33 0.60 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -28.07 294.43 -7.89 -35.95 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.75 Total: 5.06 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -0.74 Total: -22.85 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.18 Total: -39.06 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.07 -7.89 -35.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.991 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds