Wall clock time and date at job start Mon Mar 30 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47496 * 2 1 4 4 C 1.53007 * 109.46834 * 240.00090 * 2 1 3 5 5 C 1.50705 * 109.47002 * 175.00156 * 4 2 1 6 6 H 1.07999 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99893 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00012 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46764 * 120.00047 * 9 7 5 12 12 H 1.48496 * 109.47167 * 239.99987 * 9 7 5 13 13 N 1.46894 * 109.47457 * 120.00500 * 2 1 3 14 14 C 1.46906 * 110.99934 * 257.66752 * 13 2 1 15 15 C 1.53004 * 109.46930 * 54.61724 * 14 13 2 16 16 C 1.52995 * 109.47137 * 294.61782 * 14 13 2 17 17 C 1.52998 * 109.47230 * 174.61441 * 14 13 2 18 18 C 1.53777 * 113.61622 * 274.94864 * 17 14 13 19 19 C 1.53791 * 87.08174 * 220.01680 * 18 17 14 20 20 C 1.53780 * 87.07659 * 25.43259 * 19 18 17 21 21 H 1.08997 * 109.47305 * 183.24417 * 1 2 3 22 22 H 1.08999 * 109.46782 * 303.24352 * 1 2 3 23 23 H 1.08998 * 109.47342 * 63.24297 * 1 2 3 24 24 H 1.08997 * 109.47310 * 294.99763 * 4 2 1 25 25 H 1.08998 * 109.46810 * 55.00533 * 4 2 1 26 26 H 0.97001 * 119.99672 * 179.97438 * 8 7 5 27 27 H 1.00899 * 111.00959 * 133.71387 * 13 2 1 28 28 H 1.08999 * 109.47018 * 293.25768 * 15 14 13 29 29 H 1.09002 * 109.47043 * 173.25528 * 15 14 13 30 30 H 1.09000 * 109.46962 * 53.25955 * 15 14 13 31 31 H 1.09000 * 109.47191 * 186.60636 * 16 14 13 32 32 H 1.08999 * 109.47138 * 306.60542 * 16 14 13 33 33 H 1.08995 * 109.47337 * 66.60079 * 16 14 13 34 34 H 1.09010 * 112.84808 * 46.25487 * 17 14 13 35 35 H 1.08995 * 113.61557 * 334.56067 * 18 17 14 36 36 H 1.08998 * 113.61799 * 105.47090 * 18 17 14 37 37 H 1.09002 * 113.61186 * 270.88664 * 19 18 17 38 38 H 1.08996 * 113.61032 * 139.97648 * 19 18 17 39 39 H 1.09008 * 113.61301 * 220.02290 * 20 19 18 40 40 H 1.09003 * 113.69574 * 89.12959 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0790 -0.0856 -0.5397 7 6 4.2303 -1.1927 -2.3585 8 7 3.5762 -1.8369 -3.3002 9 14 6.0919 -1.0603 -2.4375 10 1 6.5837 -0.2911 -1.2663 11 1 6.6860 -2.4212 -2.4203 12 1 6.4859 -0.3640 -3.6886 13 7 2.0197 -0.6926 1.1993 14 6 2.4714 0.2684 2.2146 15 6 1.3452 1.2594 2.5154 16 6 3.6923 1.0273 1.6910 17 6 2.8469 -0.4809 3.4946 18 6 1.6503 -0.7574 4.4201 19 6 2.5819 -0.4186 5.5958 20 6 3.3939 0.4319 4.6048 21 1 -0.3634 -1.0260 0.0582 22 1 -0.3633 0.5634 0.8595 23 1 -0.3634 0.4626 -0.9176 24 1 1.7516 -1.7715 -1.2057 25 1 1.6053 -0.2616 -2.1370 26 1 4.0605 -2.2431 -4.0360 27 1 2.7540 -1.3442 0.9663 28 1 1.1594 1.8761 1.6361 29 1 1.6354 1.8963 3.3512 30 1 0.4387 0.7119 2.7735 31 1 4.0982 1.6544 2.4848 32 1 4.4512 0.3152 1.3667 33 1 3.3975 1.6529 0.8486 34 1 3.4662 -1.3578 3.3056 35 1 0.8297 -0.0509 4.2957 36 1 1.3210 -1.7964 4.4094 37 1 3.1280 -1.2792 5.9822 38 1 2.1004 0.1655 6.3800 39 1 4.4723 0.3531 4.7430 40 1 3.0511 1.4640 4.5299 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:28 Heat of formation + Delta-G solvation = -15.212945 kcal Electronic energy + Delta-G solvation = -16729.502479 eV Core-core repulsion = 14350.418163 eV Total energy + Delta-G solvation = -2379.084316 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85485 -38.04086 -35.05634 -33.43149 -29.67952 -29.48434 -28.06784 -26.29955 -25.97548 -24.98938 -21.81035 -20.53046 -19.18603 -18.47435 -17.21713 -16.60588 -16.11521 -15.87942 -15.47288 -14.67538 -14.22487 -14.14448 -13.77809 -13.58490 -13.34116 -13.25719 -12.91669 -12.88113 -12.65605 -12.44914 -12.37192 -12.25739 -12.14410 -12.06027 -11.67921 -11.12292 -11.07896 -11.01478 -10.84384 -10.71895 -10.56495 -9.00012 -8.18519 -6.27403 1.35819 1.37210 1.48464 2.38986 3.13579 3.42270 3.83302 3.90585 4.03683 4.19202 4.28886 4.36798 4.41770 4.56264 4.72197 4.76831 4.78868 4.82697 4.92504 4.97485 5.01716 5.07077 5.12912 5.16799 5.22029 5.22810 5.29289 5.36506 5.44411 5.48311 5.54763 5.59425 5.63864 5.80274 5.88319 6.26540 6.58320 6.76639 6.89904 7.41391 8.93707 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029236 B = 0.008102 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.489241 B = 3455.256395 C = 4030.047684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.097 3.903 3 H 0.039 0.961 4 C 0.020 3.980 5 C -0.529 4.529 6 H 0.070 0.930 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.954 3.046 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.119 3.881 15 C -0.134 4.134 16 C -0.170 4.170 17 C -0.099 4.099 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.131 4.131 21 H 0.044 0.956 22 H 0.067 0.933 23 H 0.043 0.957 24 H -0.008 1.008 25 H -0.011 1.011 26 H 0.261 0.739 27 H 0.336 0.664 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 5.589 16.135 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.013 4.013 3 H 0.057 0.943 4 C -0.018 4.018 5 C -0.567 4.567 6 H 0.089 0.911 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.780 3.220 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.301 5.301 14 C 0.028 3.972 15 C -0.192 4.192 16 C -0.228 4.228 17 C -0.118 4.118 18 C -0.168 4.168 19 C -0.172 4.172 20 C -0.169 4.169 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.011 0.989 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.155 0.845 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.652 5.424 16.255 17.340 hybrid contribution 1.838 -0.070 -1.400 2.312 sum -0.813 5.355 14.854 15.811 Atomic orbital electron populations 1.21838 0.95163 1.01154 1.00627 1.21392 0.94555 0.95838 0.89481 0.94289 1.19315 0.95108 0.94487 0.92887 1.21784 0.93193 1.33429 1.08293 0.91150 1.25882 1.02940 0.95149 0.95591 1.70117 1.37266 1.37196 1.12824 0.85555 0.80443 0.77844 0.78160 1.18671 1.20677 1.20816 1.60860 1.40977 1.17734 1.10542 1.20912 0.93013 0.91635 0.91654 1.22032 0.98116 0.97876 1.01128 1.22503 0.98964 1.00616 1.00754 1.22479 0.98543 0.98342 0.92438 1.22995 0.96957 1.01490 0.95352 1.22783 0.98055 0.99931 0.96418 1.22986 0.99709 0.98896 0.95296 0.93670 0.91443 0.93804 0.98930 0.99289 0.93060 0.84514 0.93754 0.90820 0.91384 0.91028 0.94476 0.94088 0.91166 0.89088 0.92644 0.90331 0.90373 0.91790 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.25 71.98 0.67 -3.99 16 2 C 0.10 4.01 1.73 44.92 0.08 4.09 16 3 H 0.04 1.64 5.00 -2.39 -0.01 1.63 16 4 C 0.02 1.03 4.43 29.85 0.13 1.16 16 5 C -0.53 -29.21 8.17 25.60 0.21 -29.00 16 6 H 0.07 3.69 5.38 -2.91 -0.02 3.67 16 7 C 0.00 0.11 5.46 84.65 0.46 0.57 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 9 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 N -0.67 -25.18 5.94 -448.28 -2.66 -27.84 16 14 C 0.12 3.61 0.63 3.53 0.00 3.62 16 15 C -0.13 -3.51 5.87 71.98 0.42 -3.08 16 16 C -0.17 -5.54 7.14 71.98 0.51 -5.02 16 17 C -0.10 -2.60 3.40 -10.27 -0.03 -2.64 16 18 C -0.13 -2.97 7.30 31.12 0.23 -2.74 16 19 C -0.13 -2.50 8.08 31.12 0.25 -2.25 16 20 C -0.13 -2.72 6.29 31.12 0.20 -2.52 16 21 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.07 2.06 6.00 -2.39 -0.01 2.04 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 26 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.34 14.38 7.39 -89.69 -0.66 13.72 16 28 H 0.04 1.24 6.32 -2.39 -0.02 1.23 16 29 H 0.07 1.57 6.39 -2.39 -0.02 1.56 16 30 H 0.07 1.73 5.94 -2.39 -0.01 1.72 16 31 H 0.07 1.93 7.08 -2.39 -0.02 1.92 16 32 H 0.04 1.36 7.06 -2.39 -0.02 1.34 16 33 H 0.04 1.47 6.51 -2.39 -0.02 1.45 16 34 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.09 1.98 5.58 -2.39 -0.01 1.96 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.09 1.71 6.39 -2.39 -0.02 1.69 16 Total: -1.00 -60.99 294.43 3.12 -57.86 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.35 Total: 22.07 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 3.12 Total: -41.81 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.38 Total: -84.65 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -60.99 3.12 -57.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.651 kcal (2) G-P(sol) polarization free energy of solvation -60.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds