Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47492 * 2 1 4 4 C 1.53001 * 109.47001 * 120.00094 * 2 1 3 5 5 C 1.52998 * 115.54942 * 325.66582 * 4 2 1 6 6 C 1.53074 * 117.51640 * 111.39199 * 4 2 1 7 7 C 1.52997 * 59.98478 * 107.47548 * 6 4 2 8 8 H 1.08998 * 117.50059 * 252.49330 * 7 6 4 9 9 N 1.46903 * 117.49941 * 107.50226 * 7 6 4 10 10 C 1.46900 * 111.00037 * 136.24815 * 9 7 6 11 11 H 1.09000 * 109.46989 * 35.00270 * 10 9 7 12 12 C 1.52998 * 109.47354 * 275.00123 * 10 9 7 13 13 C 1.53001 * 109.46848 * 155.00057 * 10 9 7 14 14 C 1.50694 * 109.47168 * 295.00230 * 13 10 9 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 H 1.09007 * 109.46882 * 300.00535 * 1 2 3 23 23 H 1.09001 * 109.46772 * 59.99999 * 1 2 3 24 24 H 1.08995 * 109.47643 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47098 * 239.99490 * 2 1 3 26 26 H 1.08998 * 109.47365 * 59.99654 * 3 2 1 27 27 H 1.09001 * 109.47255 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47113 * 299.99792 * 3 2 1 29 29 H 1.09006 * 109.47020 * 274.33228 * 5 4 2 30 30 H 1.08994 * 109.47263 * 34.33102 * 5 4 2 31 31 H 1.09004 * 109.47447 * 154.33350 * 5 4 2 32 32 H 1.08996 * 117.49117 * 359.97438 * 6 4 2 33 33 H 1.08999 * 117.51381 * 214.95362 * 6 4 2 34 34 H 1.00895 * 110.99822 * 260.20685 * 9 7 6 35 35 H 1.08999 * 109.47050 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47193 * 300.00022 * 12 10 9 37 37 H 1.09005 * 109.47168 * 60.00092 * 12 10 9 38 38 H 1.09007 * 109.46922 * 174.99931 * 13 10 9 39 39 H 1.09003 * 109.46836 * 55.00687 * 13 10 9 40 40 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.1852 -0.5481 2.5063 6 6 2.7425 -2.0668 1.0517 7 6 3.5549 -0.8281 1.4343 8 1 4.1884 -0.3847 0.6661 9 7 4.0775 -0.7566 2.8054 10 6 5.4693 -0.2866 2.8144 11 1 5.6105 0.4460 2.0198 12 6 6.4095 -1.4722 2.5880 13 6 5.7803 0.3602 4.1657 14 6 4.9399 1.5995 4.3347 15 1 4.2523 1.8960 3.5565 16 6 5.0487 2.3549 5.4830 17 7 5.8857 1.9936 6.4310 18 14 4.0074 3.8916 5.6922 19 1 4.3093 4.5193 7.0038 20 1 4.3157 4.8507 4.6013 21 1 2.5692 3.5260 5.6383 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.4777 0.3670 3.0214 30 1 0.1339 -0.4866 2.2253 31 1 1.3350 -1.4012 3.1681 32 1 2.8408 -2.4381 0.0317 33 1 2.5958 -2.8287 1.8173 34 1 3.4944 -0.1713 3.3845 35 1 7.4421 -1.1234 2.5943 36 1 6.2682 -2.2049 3.3826 37 1 6.1879 -1.9330 1.6253 38 1 6.8361 0.6288 4.2055 39 1 5.5543 -0.3442 4.9662 40 1 5.9625 2.5253 7.2386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695841556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = -6.074304 kcal Electronic energy + Delta-G solvation = -16337.016856 eV Core-core repulsion = 13958.328821 eV Total energy + Delta-G solvation = -2378.688035 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.99743 -35.79059 -33.27688 -32.18479 -28.77089 -28.15786 -27.33894 -26.71843 -23.12459 -22.27369 -20.77275 -19.43636 -17.99065 -16.33731 -15.57870 -15.20310 -14.63706 -14.26824 -14.08395 -13.07012 -13.02388 -12.75267 -12.43674 -12.35975 -12.09749 -11.74391 -11.53229 -11.31945 -11.14574 -11.04825 -11.03772 -10.99697 -10.69598 -10.54937 -10.42951 -10.32134 -9.78491 -9.37801 -9.07585 -9.00986 -8.38546 -7.48677 -6.02177 -4.05236 3.30624 3.35762 3.37547 4.13172 4.43283 4.62756 4.95423 5.01457 5.21067 5.32817 5.36710 5.50702 5.62372 5.74050 5.74248 5.93519 5.97764 6.00730 6.05276 6.08483 6.10161 6.19123 6.27442 6.29553 6.35509 6.41623 6.47433 6.50061 6.61726 6.72330 6.96057 6.98057 7.57569 7.65156 7.97687 8.11366 8.31097 8.38983 9.00827 9.58772 11.08720 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.008566 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.274743 B = 3267.871941 C = 4102.037714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.056 4.056 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.119 4.119 6 C -0.170 4.170 7 C 0.041 3.959 8 H 0.089 0.911 9 N -0.651 5.651 10 C 0.089 3.911 11 H 0.030 0.970 12 C -0.134 4.134 13 C 0.019 3.981 14 C -0.524 4.524 15 H 0.051 0.949 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.287 1.287 20 H -0.278 1.278 21 H -0.276 1.276 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.358 0.642 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.037 0.963 38 H 0.021 0.979 39 H 0.025 0.975 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 -4.594 -11.287 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.203 4.203 4 C -0.139 4.139 5 C -0.176 4.176 6 C -0.209 4.209 7 C -0.071 4.071 8 H 0.107 0.893 9 N -0.285 5.285 10 C -0.020 4.020 11 H 0.048 0.952 12 C -0.192 4.192 13 C -0.018 4.018 14 C -0.562 4.562 15 H 0.070 0.930 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.213 1.213 20 H -0.203 1.203 21 H -0.202 1.202 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.182 0.818 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.728 -5.183 -11.038 14.437 hybrid contribution -0.583 1.791 -0.030 1.884 sum -8.312 -3.391 -11.068 14.251 Atomic orbital electron populations 1.21886 0.95407 1.01463 1.01429 1.20611 0.95363 0.95750 0.95729 1.21820 1.01338 0.95781 1.01367 1.21842 0.94953 1.00294 0.96772 1.21346 0.98572 1.02364 0.95284 1.23375 1.04782 0.91566 1.01166 1.22541 0.91214 1.00315 0.93012 0.89348 1.60316 1.04080 1.57200 1.06934 1.21664 0.86815 0.93514 1.00014 0.95233 1.21786 0.98260 0.98876 1.00279 1.19290 0.97048 0.94935 0.90506 1.21140 1.23120 1.09348 1.02587 0.93033 1.24983 0.95420 0.97679 0.95965 1.69953 1.36233 1.39157 1.07648 0.86720 0.80905 0.83490 0.77278 1.21272 1.20346 1.20172 0.92111 0.93252 0.92785 0.91698 0.92429 0.92596 0.93250 0.92117 0.92082 0.92087 0.89899 0.88807 0.81834 0.93451 0.92745 0.94393 0.96025 0.95645 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.20 37.15 0.30 -1.27 16 2 C -0.06 -0.70 2.99 -90.62 -0.27 -0.97 16 3 C -0.15 -1.91 9.03 37.16 0.34 -1.57 16 4 C -0.14 -1.96 1.91 -154.47 -0.29 -2.26 16 5 C -0.12 -1.72 8.43 37.16 0.31 -1.41 16 6 C -0.17 -2.44 9.75 -26.69 -0.26 -2.70 16 7 C 0.04 0.67 5.22 -67.71 -0.35 0.32 16 8 H 0.09 1.48 7.07 -51.93 -0.37 1.11 16 9 N -0.65 -12.75 6.37 -99.74 -0.64 -13.39 16 10 C 0.09 1.89 2.55 -67.71 -0.17 1.71 16 11 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 12 C -0.13 -2.48 9.42 37.16 0.35 -2.13 16 13 C 0.02 0.50 4.57 -27.89 -0.13 0.37 16 14 C -0.52 -14.39 8.12 -34.44 -0.28 -14.67 16 15 H 0.05 1.38 7.49 -52.49 -0.39 0.99 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H 0.06 0.67 6.45 -51.93 -0.33 0.34 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.77 7.90 -51.93 -0.41 0.36 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.79 7.29 -51.93 -0.38 0.41 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.98 7.59 -51.93 -0.39 0.58 16 30 H 0.06 0.76 5.58 -51.93 -0.29 0.47 16 31 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 32 H 0.08 1.05 8.05 -51.93 -0.42 0.64 16 33 H 0.09 1.39 8.05 -51.93 -0.42 0.98 16 34 H 0.36 7.61 5.68 -39.29 -0.22 7.38 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.04 0.63 8.07 -51.93 -0.42 0.22 16 38 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 314.29 15.07 4.74 4.74 Total: -1.00 -28.27 314.29 -8.10 -36.37 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.37 Total: 4.60 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -0.55 Total: -22.93 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.10 Total: -39.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.27 -8.10 -36.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.294 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds