Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47492 * 2 1 4 4 C 1.53001 * 109.47001 * 120.00094 * 2 1 3 5 5 C 1.52998 * 115.54942 * 325.66582 * 4 2 1 6 6 C 1.53074 * 117.51640 * 111.39199 * 4 2 1 7 7 C 1.52997 * 59.98478 * 107.47548 * 6 4 2 8 8 H 1.08998 * 117.50059 * 252.49330 * 7 6 4 9 9 N 1.46903 * 117.49941 * 107.50226 * 7 6 4 10 10 C 1.46900 * 111.00037 * 136.24815 * 9 7 6 11 11 H 1.09000 * 109.46989 * 35.00270 * 10 9 7 12 12 C 1.52998 * 109.47354 * 275.00123 * 10 9 7 13 13 C 1.53001 * 109.46848 * 155.00057 * 10 9 7 14 14 C 1.50694 * 109.47168 * 295.00230 * 13 10 9 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 H 1.09007 * 109.46882 * 300.00535 * 1 2 3 23 23 H 1.09001 * 109.46772 * 59.99999 * 1 2 3 24 24 H 1.08995 * 109.47643 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47098 * 239.99490 * 2 1 3 26 26 H 1.08998 * 109.47365 * 59.99654 * 3 2 1 27 27 H 1.09001 * 109.47255 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47113 * 299.99792 * 3 2 1 29 29 H 1.09006 * 109.47020 * 274.33228 * 5 4 2 30 30 H 1.08994 * 109.47263 * 34.33102 * 5 4 2 31 31 H 1.09004 * 109.47447 * 154.33350 * 5 4 2 32 32 H 1.08996 * 117.49117 * 359.97438 * 6 4 2 33 33 H 1.08999 * 117.51381 * 214.95362 * 6 4 2 34 34 H 1.00895 * 110.99822 * 260.20685 * 9 7 6 35 35 H 1.08999 * 109.47050 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47193 * 300.00022 * 12 10 9 37 37 H 1.09005 * 109.47168 * 60.00092 * 12 10 9 38 38 H 1.09007 * 109.46922 * 174.99931 * 13 10 9 39 39 H 1.09003 * 109.46836 * 55.00687 * 13 10 9 40 40 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.1852 -0.5481 2.5063 6 6 2.7425 -2.0668 1.0517 7 6 3.5549 -0.8281 1.4343 8 1 4.1884 -0.3847 0.6661 9 7 4.0775 -0.7566 2.8054 10 6 5.4693 -0.2866 2.8144 11 1 5.6105 0.4460 2.0198 12 6 6.4095 -1.4722 2.5880 13 6 5.7803 0.3602 4.1657 14 6 4.9399 1.5995 4.3347 15 1 4.2523 1.8960 3.5565 16 6 5.0487 2.3549 5.4830 17 7 5.8857 1.9936 6.4310 18 14 4.0074 3.8916 5.6922 19 1 4.3093 4.5193 7.0038 20 1 4.3157 4.8507 4.6013 21 1 2.5692 3.5260 5.6383 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.4777 0.3670 3.0214 30 1 0.1339 -0.4866 2.2253 31 1 1.3350 -1.4012 3.1681 32 1 2.8408 -2.4381 0.0317 33 1 2.5958 -2.8287 1.8173 34 1 3.4944 -0.1713 3.3845 35 1 7.4421 -1.1234 2.5943 36 1 6.2682 -2.2049 3.3826 37 1 6.1879 -1.9330 1.6253 38 1 6.8361 0.6288 4.2055 39 1 5.5543 -0.3442 4.9662 40 1 5.9625 2.5253 7.2386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695841556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = -21.743769 kcal Electronic energy + Delta-G solvation = -16337.696335 eV Core-core repulsion = 13958.328821 eV Total energy + Delta-G solvation = -2379.367514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22129 -37.40713 -34.86794 -33.87118 -30.28907 -29.41512 -29.22765 -27.69975 -25.13558 -23.33286 -22.10866 -21.13782 -19.14915 -18.51821 -16.91563 -16.66385 -16.27893 -15.89349 -15.26266 -14.70661 -14.14362 -13.98888 -13.84073 -13.67893 -13.40002 -13.33875 -13.28072 -12.88984 -12.63761 -12.56898 -12.38876 -12.37478 -12.22568 -12.00201 -11.97039 -11.40090 -11.39287 -11.03007 -11.01070 -10.58309 -10.35062 -8.98853 -8.20385 -6.30884 1.37802 1.39771 1.47568 2.38822 2.92606 3.10136 3.31353 3.85572 3.91035 4.08025 4.25672 4.34460 4.39827 4.46896 4.59087 4.66123 4.71762 4.81194 4.83866 4.97098 4.98318 5.01707 5.03812 5.07605 5.13018 5.21181 5.21829 5.25124 5.32897 5.45154 5.46682 5.48172 5.57081 5.63802 5.82716 6.20081 6.48593 6.65349 6.83663 7.37648 8.91121 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.008566 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.274743 B = 3267.871941 C = 4102.037714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.145 4.145 4 C -0.128 4.128 5 C -0.118 4.118 6 C -0.152 4.152 7 C 0.014 3.986 8 H 0.087 0.913 9 N -0.654 5.654 10 C 0.098 3.902 11 H 0.023 0.977 12 C -0.125 4.125 13 C 0.027 3.973 14 C -0.533 4.533 15 H 0.055 0.945 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.957 3.043 19 H -0.284 1.284 20 H -0.270 1.270 21 H -0.266 1.266 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.344 0.656 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.060 0.940 38 H -0.005 1.005 39 H -0.004 1.004 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -4.605 -13.126 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.202 4.202 4 C -0.129 4.129 5 C -0.175 4.175 6 C -0.190 4.190 7 C -0.097 4.097 8 H 0.105 0.895 9 N -0.286 5.286 10 C -0.012 4.012 11 H 0.041 0.959 12 C -0.183 4.183 13 C -0.010 4.010 14 C -0.571 4.571 15 H 0.073 0.927 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.782 3.218 19 H -0.209 1.209 20 H -0.195 1.195 21 H -0.190 1.190 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.166 0.834 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.446 -5.210 -12.904 16.819 hybrid contribution -0.039 1.770 0.528 1.848 sum -9.485 -3.439 -12.376 15.967 Atomic orbital electron populations 1.21859 0.93834 1.02206 1.01989 1.20647 0.96624 0.94955 0.94999 1.21814 1.00304 0.96510 1.01619 1.21946 0.93058 1.00441 0.97481 1.21341 1.00044 1.00856 0.95211 1.23397 1.02621 0.90816 1.02190 1.22585 0.92855 1.03143 0.91149 0.89500 1.60360 1.02949 1.56395 1.08910 1.21464 0.88658 0.94268 0.96763 0.95895 1.21686 0.97806 0.97590 1.01216 1.19144 0.95214 0.94298 0.92377 1.21452 1.23100 1.09856 1.02718 0.92670 1.25874 0.96653 1.01072 0.95645 1.70087 1.37929 1.40688 1.08258 0.85621 0.79468 0.79373 0.77353 1.20928 1.19502 1.19033 0.92607 0.91702 0.91936 0.90439 0.93913 0.94192 0.91255 0.94287 0.89814 0.92920 0.87532 0.89327 0.83449 0.92938 0.93323 0.92141 0.98625 0.98533 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.20 71.98 0.59 -2.02 16 2 C -0.05 -1.19 2.99 -10.80 -0.03 -1.22 16 3 C -0.15 -3.55 9.03 71.98 0.65 -2.90 16 4 C -0.13 -3.43 1.91 -52.16 -0.10 -3.53 16 5 C -0.12 -3.29 8.43 71.98 0.61 -2.68 16 6 C -0.15 -3.99 9.75 30.62 0.30 -3.69 16 7 C 0.01 0.43 5.22 44.91 0.23 0.67 16 8 H 0.09 2.82 7.07 -2.39 -0.02 2.80 16 9 N -0.65 -25.77 6.37 -469.47 -2.99 -28.76 16 10 C 0.10 4.22 2.55 44.92 0.11 4.33 16 11 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 12 C -0.13 -4.59 9.42 71.98 0.68 -3.91 16 13 C 0.03 1.44 4.57 29.85 0.14 1.58 16 14 C -0.53 -29.97 8.12 25.60 0.21 -29.77 16 15 H 0.06 3.00 7.49 -2.91 -0.02 2.98 16 16 C 0.01 0.34 5.46 84.66 0.46 0.80 16 17 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 18 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H 0.05 1.08 6.45 -2.38 -0.02 1.07 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.56 7.90 -2.39 -0.02 1.54 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 1.08 7.29 -2.39 -0.02 1.07 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.25 7.59 -2.38 -0.02 1.23 16 30 H 0.08 1.93 5.58 -2.39 -0.01 1.92 16 31 H 0.05 1.54 7.90 -2.39 -0.02 1.52 16 32 H 0.11 2.31 8.05 -2.39 -0.02 2.30 16 33 H 0.09 2.45 8.05 -2.39 -0.02 2.43 16 34 H 0.34 14.96 5.68 -89.70 -0.51 14.45 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.93 8.07 -2.38 -0.02 1.91 16 38 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 39 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -61.22 314.29 3.64 -57.58 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.47 Total: 23.61 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 3.85 Total: -42.34 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.70 Total: -85.14 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -61.22 3.64 -57.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.840 kcal (2) G-P(sol) polarization free energy of solvation -61.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds