Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47065 * 2 1 4 4 C 1.52997 * 109.46831 * 119.99953 * 2 1 3 5 5 C 1.53002 * 115.56710 * 34.31084 * 4 2 1 6 6 C 1.53002 * 117.49623 * 248.62072 * 4 2 1 7 7 C 1.53004 * 117.49512 * 179.97438 * 4 2 1 8 8 H 1.08998 * 117.51893 * 0.02562 * 7 4 2 9 9 N 1.46902 * 117.49752 * 214.97339 * 7 4 2 10 10 C 1.46904 * 110.99514 * 154.98742 * 9 7 4 11 11 H 1.09001 * 109.47264 * 35.00354 * 10 9 7 12 12 C 1.52999 * 109.47398 * 275.00226 * 10 9 7 13 13 C 1.53006 * 109.46673 * 155.00415 * 10 9 7 14 14 C 1.50698 * 109.47184 * 294.99738 * 13 10 9 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 10 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09000 * 109.47216 * 300.00286 * 1 2 3 23 23 H 1.08996 * 109.47251 * 60.00271 * 1 2 3 24 24 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46904 * 239.99433 * 2 1 3 26 26 H 1.08997 * 109.46850 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46982 * 299.99538 * 3 2 1 28 28 H 1.09000 * 109.47337 * 59.99788 * 3 2 1 29 29 H 1.08993 * 109.47287 * 205.68966 * 5 4 2 30 30 H 1.09000 * 109.46821 * 325.68966 * 5 4 2 31 31 H 1.08995 * 109.47156 * 85.68755 * 5 4 2 32 32 H 1.08997 * 117.49570 * 145.02704 * 6 4 2 33 33 H 1.08996 * 117.50055 * 0.02562 * 6 4 2 34 34 H 1.00901 * 111.00165 * 31.04295 * 9 7 4 35 35 H 1.09001 * 109.47018 * 300.00279 * 12 10 9 36 36 H 1.09002 * 109.47069 * 60.00290 * 12 10 9 37 37 H 1.08995 * 109.47070 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47002 * 175.00334 * 13 10 9 39 39 H 1.08993 * 109.46955 * 54.99896 * 13 10 9 40 40 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.1851 -1.8963 1.7285 6 6 2.7418 0.1227 2.3151 7 6 3.5550 -0.8286 1.4340 8 1 4.1887 -0.3851 0.6659 9 7 4.0772 -2.0515 2.0583 10 6 5.4680 -2.2965 1.6536 11 1 5.9869 -1.3445 1.5415 12 6 5.4866 -3.0474 0.3207 13 6 6.1695 -3.1371 2.7224 14 6 6.2601 -2.3477 4.0029 15 1 5.8571 -1.3468 4.0498 16 6 6.8563 -2.9037 5.1148 17 7 7.3465 -4.1227 5.0578 18 14 6.9679 -1.9255 6.7022 19 1 7.6489 -2.7413 7.7396 20 1 5.6010 -1.5759 7.1654 21 1 7.7430 -0.6815 6.4638 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5140 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9563 0.8899 29 1 1.3351 -2.0422 2.7981 30 1 0.1338 -1.6836 1.5346 31 1 1.4776 -2.8000 1.1940 32 1 2.5946 -0.1593 3.3577 33 1 2.8399 1.1917 2.1265 34 1 3.4928 -2.8454 1.8429 35 1 4.9678 -3.9994 0.4327 36 1 4.9868 -2.4486 -0.4407 37 1 6.5186 -3.2287 0.0202 38 1 7.1728 -3.3937 2.3821 39 1 5.6006 -4.0501 2.8978 40 1 7.2883 -4.6308 4.2335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695841564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = -1.584357 kcal Electronic energy + Delta-G solvation = -16181.517401 eV Core-core repulsion = 13803.024065 eV Total energy + Delta-G solvation = -2378.493336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.25086 -36.03910 -33.29273 -32.18262 -29.25840 -28.45309 -26.87554 -26.14484 -22.91840 -22.83921 -20.68331 -19.96003 -18.02905 -16.65267 -15.94099 -15.23156 -14.47335 -13.99376 -13.64745 -13.43468 -13.11379 -13.09412 -12.61373 -12.42004 -12.32021 -12.07028 -11.70060 -11.40805 -11.31764 -11.14147 -11.03062 -10.90554 -10.66647 -10.58354 -10.28866 -10.02039 -9.99430 -9.55944 -9.18224 -8.38696 -8.16230 -7.45255 -6.16201 -3.80632 3.54175 3.57300 3.75348 4.04679 4.51844 4.69861 4.83610 4.92430 5.07355 5.11511 5.40998 5.55402 5.56186 5.57683 5.62802 5.69826 5.74504 5.82664 5.83629 5.92593 5.94276 5.99237 6.02350 6.09889 6.23060 6.26089 6.32583 6.36986 6.48830 6.54895 6.62379 6.92746 7.36679 7.49838 7.94956 8.09458 8.46601 8.72207 9.09948 9.87787 11.24282 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032136 B = 0.006494 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.099933 B = 4310.603964 C = 4700.161601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.117 4.117 6 C -0.167 4.167 7 C 0.038 3.962 8 H 0.088 0.912 9 N -0.631 5.631 10 C 0.098 3.902 11 H 0.066 0.934 12 C -0.180 4.180 13 C 0.020 3.980 14 C -0.567 4.567 15 H 0.052 0.948 16 C 0.006 3.994 17 N -0.925 5.925 18 Si 1.068 2.932 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.291 1.291 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.332 0.668 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.007 0.993 39 H 0.006 0.994 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.118 7.693 -10.737 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.206 4.206 4 C -0.144 4.144 5 C -0.174 4.174 6 C -0.205 4.205 7 C -0.074 4.074 8 H 0.106 0.894 9 N -0.260 5.260 10 C -0.012 4.012 11 H 0.084 0.916 12 C -0.240 4.240 13 C -0.017 4.017 14 C -0.606 4.606 15 H 0.070 0.930 16 C -0.195 4.195 17 N -0.563 5.563 18 Si 0.897 3.103 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.218 1.218 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.386 7.924 -8.565 16.303 hybrid contribution -0.634 -0.219 -2.526 2.614 sum -12.020 7.705 -11.091 18.079 Atomic orbital electron populations 1.21887 0.95332 1.01675 1.01286 1.20538 0.95383 0.95357 0.96253 1.21958 1.01150 0.96079 1.01413 1.21900 0.94574 1.00171 0.97772 1.21339 0.98723 0.95858 1.01525 1.23475 1.03591 0.96616 0.96800 1.22528 0.90776 0.95702 0.98348 0.89401 1.60263 1.02805 1.03425 1.59522 1.21692 0.88302 0.98819 0.92356 0.91604 1.22607 1.01619 1.00534 0.99196 1.19229 0.93612 0.94962 0.93935 1.21939 1.39628 1.02433 0.96605 0.92966 1.25761 0.94175 0.97186 1.02390 1.70788 1.44800 1.10436 1.30254 0.83558 0.76184 0.74867 0.75671 1.21148 1.21640 1.21779 0.92570 0.93222 0.92301 0.91615 0.92585 0.93137 0.92161 0.91723 0.91944 0.92963 0.88514 0.89016 0.84744 0.93153 0.94168 0.92590 0.97469 0.97537 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.20 37.16 0.30 -1.09 16 2 C -0.06 -0.63 3.15 -90.62 -0.29 -0.92 16 3 C -0.15 -1.55 7.79 37.15 0.29 -1.26 16 4 C -0.14 -1.90 2.46 -154.50 -0.38 -2.28 16 5 C -0.12 -1.51 8.43 37.16 0.31 -1.20 16 6 C -0.17 -2.52 9.14 -26.70 -0.24 -2.76 16 7 C 0.04 0.61 5.32 -67.68 -0.36 0.25 16 8 H 0.09 1.41 7.24 -51.93 -0.38 1.03 16 9 N -0.63 -12.18 6.02 -99.70 -0.60 -12.78 16 10 C 0.10 2.04 2.43 -67.71 -0.16 1.87 16 11 H 0.07 1.43 7.73 -51.93 -0.40 1.03 16 12 C -0.18 -3.11 9.16 37.16 0.34 -2.77 16 13 C 0.02 0.52 3.97 -27.88 -0.11 0.41 16 14 C -0.57 -16.52 8.84 -34.44 -0.30 -16.83 16 15 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.01 0.19 5.46 -17.82 -0.10 0.10 16 17 N -0.92 -29.21 13.65 55.43 0.76 -28.45 16 18 Si 1.07 26.51 29.90 -169.99 -5.08 21.43 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.55 6.45 -51.93 -0.33 0.21 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.62 7.08 -51.93 -0.37 0.25 16 27 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 28 H 0.06 0.62 6.98 -51.93 -0.36 0.26 16 29 H 0.06 0.93 7.90 -51.93 -0.41 0.52 16 30 H 0.06 0.69 5.58 -51.93 -0.29 0.40 16 31 H 0.05 0.66 7.58 -51.93 -0.39 0.27 16 32 H 0.10 1.64 8.05 -51.93 -0.42 1.22 16 33 H 0.09 1.24 5.85 -51.93 -0.30 0.94 16 34 H 0.33 6.07 6.94 -39.29 -0.27 5.80 16 35 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 39 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 40 H 0.26 8.33 7.22 -40.82 -0.29 8.03 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -30.92 310.51 -8.16 -39.08 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.21 Total: 2.52 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -0.70 Total: -26.48 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.16 Total: -41.23 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.08 Total: 21.43 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.92 -8.16 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.501 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds