Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47065 * 2 1 4 4 C 1.52997 * 109.46831 * 119.99953 * 2 1 3 5 5 C 1.53002 * 115.56710 * 34.31084 * 4 2 1 6 6 C 1.53002 * 117.49623 * 248.62072 * 4 2 1 7 7 C 1.53004 * 117.49512 * 179.97438 * 4 2 1 8 8 H 1.08998 * 117.51893 * 0.02562 * 7 4 2 9 9 N 1.46902 * 117.49752 * 214.97339 * 7 4 2 10 10 C 1.46904 * 110.99514 * 154.98742 * 9 7 4 11 11 H 1.09001 * 109.47264 * 35.00354 * 10 9 7 12 12 C 1.52999 * 109.47398 * 275.00226 * 10 9 7 13 13 C 1.53006 * 109.46673 * 155.00415 * 10 9 7 14 14 C 1.50698 * 109.47184 * 294.99738 * 13 10 9 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 10 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09000 * 109.47216 * 300.00286 * 1 2 3 23 23 H 1.08996 * 109.47251 * 60.00271 * 1 2 3 24 24 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46904 * 239.99433 * 2 1 3 26 26 H 1.08997 * 109.46850 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46982 * 299.99538 * 3 2 1 28 28 H 1.09000 * 109.47337 * 59.99788 * 3 2 1 29 29 H 1.08993 * 109.47287 * 205.68966 * 5 4 2 30 30 H 1.09000 * 109.46821 * 325.68966 * 5 4 2 31 31 H 1.08995 * 109.47156 * 85.68755 * 5 4 2 32 32 H 1.08997 * 117.49570 * 145.02704 * 6 4 2 33 33 H 1.08996 * 117.50055 * 0.02562 * 6 4 2 34 34 H 1.00901 * 111.00165 * 31.04295 * 9 7 4 35 35 H 1.09001 * 109.47018 * 300.00279 * 12 10 9 36 36 H 1.09002 * 109.47069 * 60.00290 * 12 10 9 37 37 H 1.08995 * 109.47070 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47002 * 175.00334 * 13 10 9 39 39 H 1.08993 * 109.46955 * 54.99896 * 13 10 9 40 40 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.1851 -1.8963 1.7285 6 6 2.7418 0.1227 2.3151 7 6 3.5550 -0.8286 1.4340 8 1 4.1887 -0.3851 0.6659 9 7 4.0772 -2.0515 2.0583 10 6 5.4680 -2.2965 1.6536 11 1 5.9869 -1.3445 1.5415 12 6 5.4866 -3.0474 0.3207 13 6 6.1695 -3.1371 2.7224 14 6 6.2601 -2.3477 4.0029 15 1 5.8571 -1.3468 4.0498 16 6 6.8563 -2.9037 5.1148 17 7 7.3465 -4.1227 5.0578 18 14 6.9679 -1.9255 6.7022 19 1 7.6489 -2.7413 7.7396 20 1 5.6010 -1.5759 7.1654 21 1 7.7430 -0.6815 6.4638 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5140 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9563 0.8899 29 1 1.3351 -2.0422 2.7981 30 1 0.1338 -1.6836 1.5346 31 1 1.4776 -2.8000 1.1940 32 1 2.5946 -0.1593 3.3577 33 1 2.8399 1.1917 2.1265 34 1 3.4928 -2.8454 1.8429 35 1 4.9678 -3.9994 0.4327 36 1 4.9868 -2.4486 -0.4407 37 1 6.5186 -3.2287 0.0202 38 1 7.1728 -3.3937 2.3821 39 1 5.6006 -4.0501 2.8978 40 1 7.2883 -4.6308 4.2335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695841564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -19.817605 kcal Electronic energy + Delta-G solvation = -16182.308054 eV Core-core repulsion = 13803.024065 eV Total energy + Delta-G solvation = -2379.283989 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.41782 -37.62136 -35.05048 -33.69830 -30.32383 -29.95767 -28.76021 -27.02996 -25.03371 -23.85594 -22.06462 -21.60102 -19.18098 -18.74055 -17.13904 -16.54415 -15.64038 -15.52946 -15.35563 -15.25578 -14.51752 -14.28671 -13.76212 -13.66669 -13.43662 -13.32828 -13.17523 -13.01050 -12.70537 -12.52361 -12.30838 -12.22146 -12.14083 -11.93803 -11.90624 -11.53678 -11.40977 -11.13444 -10.57892 -10.47354 -10.37091 -8.91056 -8.56555 -6.21480 1.52392 1.61648 1.80631 2.61776 2.87569 3.14089 3.30075 3.85677 3.89068 4.01458 4.12105 4.19496 4.27934 4.33286 4.46355 4.53648 4.66129 4.71853 4.82548 4.84988 4.92526 4.95164 5.01521 5.05528 5.06488 5.11076 5.15384 5.18582 5.22747 5.26292 5.43853 5.48153 5.49055 5.59002 6.13742 6.32737 6.41453 6.62595 6.74902 7.55428 8.84454 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032136 B = 0.006494 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.099933 B = 4310.603964 C = 4700.161601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.174 4.174 7 C 0.018 3.982 8 H 0.092 0.908 9 N -0.649 5.649 10 C 0.107 3.893 11 H 0.055 0.945 12 C -0.168 4.168 13 C 0.022 3.978 14 C -0.575 4.575 15 H 0.045 0.955 16 C -0.048 4.048 17 N -0.949 5.949 18 Si 1.115 2.885 19 H -0.285 1.285 20 H -0.275 1.275 21 H -0.272 1.272 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.335 0.665 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.056 0.944 38 H -0.012 1.012 39 H -0.014 1.014 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.623 9.124 -11.738 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.205 4.205 4 C -0.117 4.117 5 C -0.176 4.176 6 C -0.212 4.212 7 C -0.093 4.093 8 H 0.110 0.890 9 N -0.280 5.280 10 C -0.003 4.003 11 H 0.073 0.927 12 C -0.227 4.227 13 C -0.016 4.016 14 C -0.613 4.613 15 H 0.063 0.937 16 C -0.243 4.243 17 N -0.588 5.588 18 Si 0.938 3.062 19 H -0.211 1.211 20 H -0.201 1.201 21 H -0.197 1.197 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.006 0.994 39 H 0.004 0.996 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.905 9.366 -9.595 18.610 hybrid contribution -0.193 -0.662 -2.243 2.346 sum -13.098 8.704 -11.838 19.684 Atomic orbital electron populations 1.21869 0.93819 1.02188 1.02072 1.20588 0.96588 0.95471 0.94785 1.21944 1.00567 0.95724 1.02271 1.21988 0.92386 0.99438 0.97848 1.21376 1.00113 0.95868 1.00230 1.23487 1.04193 0.97551 0.95962 1.22540 0.92858 0.94713 0.99184 0.89030 1.60087 1.02117 1.04800 1.60961 1.21367 0.88838 0.97610 0.92440 0.92660 1.22440 1.02188 1.00533 0.97557 1.19160 0.92950 0.94660 0.94793 1.22253 1.38818 1.02287 0.97945 0.93659 1.27263 0.93562 0.97373 1.06127 1.70923 1.46663 1.11516 1.29731 0.82947 0.77142 0.74213 0.71923 1.21079 1.20106 1.19700 0.92652 0.91643 0.91929 0.91233 0.93516 0.91428 0.92194 0.93738 0.89632 0.92667 0.90793 0.87431 0.84419 0.92853 0.91542 0.92442 0.99359 0.99603 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.20 71.98 0.59 -1.66 16 2 C -0.06 -1.08 3.15 -10.80 -0.03 -1.11 16 3 C -0.15 -2.68 7.79 71.98 0.56 -2.11 16 4 C -0.12 -2.87 2.46 -52.18 -0.13 -3.00 16 5 C -0.12 -2.88 8.43 71.98 0.61 -2.27 16 6 C -0.17 -5.12 9.14 30.61 0.28 -4.84 16 7 C 0.02 0.55 5.32 44.93 0.24 0.79 16 8 H 0.09 2.82 7.24 -2.39 -0.02 2.80 16 9 N -0.65 -25.10 6.02 -469.34 -2.83 -27.93 16 10 C 0.11 4.50 2.43 44.92 0.11 4.61 16 11 H 0.06 2.41 7.73 -2.39 -0.02 2.39 16 12 C -0.17 -5.62 9.16 71.98 0.66 -4.96 16 13 C 0.02 1.16 3.97 29.85 0.12 1.28 16 14 C -0.57 -34.09 8.84 25.60 0.23 -33.87 16 15 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 16 C -0.05 -2.90 5.46 84.65 0.46 -2.43 16 17 N -0.95 -61.19 13.65 21.45 0.29 -60.90 16 18 Si 1.12 53.38 29.90 68.60 2.05 55.43 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.95 6.45 -2.39 -0.02 0.93 16 25 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.05 0.93 7.08 -2.39 -0.02 0.91 16 27 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.06 1.09 6.98 -2.39 -0.02 1.07 16 29 H 0.04 1.25 7.90 -2.39 -0.02 1.23 16 30 H 0.09 1.67 5.58 -2.39 -0.01 1.66 16 31 H 0.05 1.31 7.58 -2.39 -0.02 1.29 16 32 H 0.07 2.52 8.05 -2.39 -0.02 2.50 16 33 H 0.11 2.78 5.85 -2.39 -0.01 2.76 16 34 H 0.34 12.22 6.94 -89.69 -0.62 11.60 16 35 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 36 H 0.07 1.88 8.07 -2.39 -0.02 1.86 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H -0.01 -0.67 8.01 -2.39 -0.02 -0.68 16 39 H -0.01 -0.82 8.01 -2.39 -0.02 -0.84 16 40 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 Total: -1.00 -67.10 310.51 3.67 -63.43 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.46 Total: 19.54 kcal Atomic # 6 Polarization: -53.26 SS G_CDS: 3.69 Total: -49.57 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -2.53 Total: -88.83 kcal Atomic # 14 Polarization: 53.38 SS G_CDS: 2.05 Total: 55.43 kcal Total: -67.10 3.67 -63.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.611 kcal (2) G-P(sol) polarization free energy of solvation -67.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds