Wall clock time and date at job start Mon Mar 30 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 C 1.53003 * 109.47259 * 119.99836 * 2 1 3 5 5 C 1.53000 * 115.55054 * 280.35447 * 4 2 1 6 6 C 1.53071 * 117.51269 * 134.63061 * 4 2 1 7 7 C 1.53002 * 59.98677 * 252.52455 * 6 4 2 8 8 H 1.09002 * 117.50271 * 252.50239 * 7 6 4 9 9 N 1.46901 * 117.49822 * 107.49999 * 7 6 4 10 10 C 1.46903 * 110.99797 * 132.21327 * 9 7 6 11 11 H 1.08996 * 109.47165 * 35.00142 * 10 9 7 12 12 C 1.52997 * 109.47075 * 274.99771 * 10 9 7 13 13 C 1.53006 * 109.46947 * 154.99814 * 10 9 7 14 14 C 1.50697 * 109.47305 * 294.99798 * 13 10 9 15 15 H 1.08004 * 119.99780 * 0.02562 * 14 13 10 16 16 C 1.37874 * 119.99997 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99878 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00036 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47264 * 89.99516 * 18 16 14 20 20 H 1.48494 * 109.47209 * 209.99368 * 18 16 14 21 21 H 1.48503 * 109.47333 * 329.99715 * 18 16 14 22 22 H 1.08998 * 109.46983 * 299.99909 * 1 2 3 23 23 H 1.09003 * 109.47047 * 60.00378 * 1 2 3 24 24 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47432 * 239.99813 * 2 1 3 26 26 H 1.09005 * 109.47133 * 173.41060 * 3 2 1 27 27 H 1.08997 * 109.47274 * 293.41019 * 3 2 1 28 28 H 1.09002 * 109.47423 * 53.41671 * 3 2 1 29 29 H 1.08998 * 109.46883 * 205.66528 * 5 4 2 30 30 H 1.08997 * 109.46817 * 325.67067 * 5 4 2 31 31 H 1.09004 * 109.46747 * 85.66782 * 5 4 2 32 32 H 1.09003 * 117.49434 * 145.03979 * 6 4 2 33 33 H 1.09002 * 117.51391 * 0.02562 * 6 4 2 34 34 H 1.00898 * 111.00077 * 8.25375 * 9 7 6 35 35 H 1.09005 * 109.46838 * 300.00275 * 12 10 9 36 36 H 1.09001 * 109.46862 * 59.99889 * 12 10 9 37 37 H 1.08998 * 109.47518 * 180.02562 * 12 10 9 38 38 H 1.08998 * 109.46961 * 174.99799 * 13 10 9 39 39 H 1.08997 * 109.46915 * 54.99875 * 13 10 9 40 40 H 0.97001 * 119.99807 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0261 0.1024 2.5386 6 6 3.1750 -1.7323 1.0682 7 6 1.7555 -2.2201 1.3653 8 1 1.5584 -2.6194 2.3602 9 7 1.0137 -2.8566 0.2687 10 6 0.3952 -4.1134 0.7113 11 1 0.0759 -4.0155 1.7489 12 6 1.4121 -5.2506 0.5957 13 6 -0.8178 -4.4224 -0.1685 14 6 -1.8713 -3.3650 0.0388 15 1 -1.6933 -2.5535 0.7289 16 6 -3.0619 -3.4331 -0.6531 17 7 -3.9811 -2.5100 -0.4725 18 14 -3.3694 -4.8364 -1.8470 19 1 -4.0093 -5.9671 -1.1277 20 1 -4.2656 -4.3722 -2.9363 21 1 -2.0779 -5.2857 -2.4261 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1236 1.4448 0.1179 27 1 1.7761 1.9211 -0.9430 28 1 1.5836 1.9892 0.8252 29 1 2.7819 -0.2821 3.2235 30 1 2.2430 1.1449 2.3061 31 1 1.0433 0.0309 3.0047 32 1 3.9116 -1.8104 1.8678 33 1 3.5586 -1.8834 0.0592 34 1 1.6101 -3.0089 -0.5308 35 1 1.7314 -5.3484 -0.4419 36 1 2.2763 -5.0303 1.2225 37 1 0.9531 -6.1832 0.9237 38 1 -1.2235 -5.3974 0.1015 39 1 -0.5142 -4.4325 -1.2153 40 1 -4.8189 -2.5581 -0.9590 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695841567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:12 Heat of formation + Delta-G solvation = 4.375973 kcal Electronic energy + Delta-G solvation = -16508.649902 eV Core-core repulsion = 14130.415025 eV Total energy + Delta-G solvation = -2378.234877 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.97494 -35.83116 -33.05284 -32.09914 -29.53403 -27.84180 -27.15147 -26.36320 -22.72854 -22.05688 -21.22820 -19.68463 -17.78299 -16.55459 -15.46892 -15.10035 -14.30528 -13.75140 -13.60248 -13.30119 -13.02131 -12.87690 -12.41563 -12.24422 -12.15962 -11.96502 -11.72510 -11.56555 -11.30120 -11.23466 -10.74598 -10.64516 -10.37518 -10.27893 -10.12844 -9.99296 -9.67997 -9.51166 -9.10896 -8.93684 -8.38184 -7.36287 -5.86753 -3.80259 3.38186 3.46340 3.49166 4.12987 4.58058 4.60507 5.05644 5.17584 5.29648 5.43779 5.49435 5.61315 5.68353 5.76680 5.79838 5.84418 5.91340 5.98073 6.01791 6.11543 6.21752 6.27191 6.30323 6.38369 6.41396 6.51212 6.57171 6.58237 6.83759 6.87090 7.01040 7.18590 7.37302 7.63460 7.87427 7.95195 8.10635 8.76571 9.25525 9.76595 11.26885 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.008515 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.225997 B = 3287.614291 C = 3964.797726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 C -0.147 4.147 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.214 4.214 7 C 0.048 3.952 8 H 0.102 0.898 9 N -0.624 5.624 10 C 0.099 3.901 11 H 0.071 0.929 12 C -0.182 4.182 13 C -0.005 4.005 14 C -0.487 4.487 15 H 0.080 0.920 16 C 0.061 3.939 17 N -0.907 5.907 18 Si 0.872 3.128 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.269 1.269 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.110 0.890 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.332 0.668 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.011 0.989 39 H 0.015 0.985 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.566 2.077 2.755 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.060 4.060 3 C -0.204 4.204 4 C -0.112 4.112 5 C -0.173 4.173 6 C -0.253 4.253 7 C -0.063 4.063 8 H 0.120 0.880 9 N -0.252 5.252 10 C -0.010 4.010 11 H 0.089 0.911 12 C -0.241 4.241 13 C -0.043 4.043 14 C -0.526 4.526 15 H 0.098 0.902 16 C -0.138 4.138 17 N -0.548 5.548 18 Si 0.701 3.299 19 H -0.208 1.208 20 H -0.218 1.218 21 H -0.194 1.194 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.129 0.871 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.151 0.849 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.033 0.967 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.789 2.480 2.779 13.320 hybrid contribution 0.575 -1.267 -0.666 1.542 sum 13.363 1.213 2.113 13.583 Atomic orbital electron populations 1.21943 0.93111 1.06327 0.99375 1.20418 0.97162 0.93636 0.94818 1.21935 1.00003 0.97352 1.01086 1.21740 1.01161 0.91437 0.96864 1.21386 1.01446 0.99552 0.94952 1.23770 0.92682 1.06974 1.01887 1.22582 0.92551 0.95393 0.95824 0.88044 1.60191 1.33824 1.25849 1.05332 1.21643 0.93915 0.85353 1.00097 0.91115 1.22625 0.99706 1.00820 1.00934 1.19616 0.93155 0.96630 0.94885 1.21048 0.97658 1.09278 1.24586 0.90168 1.25002 0.96369 0.95667 0.96773 1.69914 1.07210 1.34459 1.43176 0.86911 0.78139 0.83261 0.81621 1.20779 1.21757 1.19366 0.94438 0.94412 0.87115 0.91934 0.93574 0.93321 0.92799 0.93365 0.91982 0.92202 0.89784 0.89398 0.84852 0.93172 0.93883 0.92635 0.97053 0.96661 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.04 37.16 0.34 -2.50 16 2 C -0.04 -0.64 2.49 -90.62 -0.23 -0.87 16 3 C -0.15 -1.93 8.18 37.16 0.30 -1.63 16 4 C -0.11 -1.60 1.78 -154.47 -0.27 -1.88 16 5 C -0.12 -1.51 9.62 37.16 0.36 -1.16 16 6 C -0.21 -2.81 9.52 -26.69 -0.25 -3.07 16 7 C 0.05 0.75 5.63 -67.71 -0.38 0.36 16 8 H 0.10 1.59 7.60 -51.93 -0.39 1.19 16 9 N -0.62 -11.04 3.97 -99.73 -0.40 -11.44 16 10 C 0.10 1.87 2.51 -67.71 -0.17 1.70 16 11 H 0.07 1.40 7.55 -51.93 -0.39 1.01 16 12 C -0.18 -2.82 9.16 37.16 0.34 -2.48 16 13 C -0.01 -0.12 3.72 -27.88 -0.10 -0.22 16 14 C -0.49 -13.51 9.12 -34.44 -0.31 -13.83 16 15 H 0.08 2.42 7.14 -52.48 -0.37 2.04 16 16 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 17 N -0.91 -28.05 13.96 55.43 0.77 -27.27 16 18 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 21 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.11 2.49 5.21 -51.93 -0.27 2.22 16 25 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.69 6.77 -51.93 -0.35 0.34 16 29 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 30 H 0.06 0.75 5.77 -51.93 -0.30 0.45 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 33 H 0.09 1.13 8.02 -51.93 -0.42 0.72 16 34 H 0.33 5.52 8.23 -39.29 -0.32 5.20 16 35 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.04 0.60 8.07 -51.93 -0.42 0.18 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 39 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 310.71 15.07 4.68 4.68 Total: -1.00 -29.10 310.71 -7.47 -36.57 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.38 Total: 4.08 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -0.48 Total: -23.87 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.38 Total: -38.71 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.10 -7.47 -36.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.943 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds