Wall clock time and date at job start Mon Mar 30 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 C 1.53003 * 109.47259 * 119.99836 * 2 1 3 5 5 C 1.53000 * 115.55054 * 280.35447 * 4 2 1 6 6 C 1.53071 * 117.51269 * 134.63061 * 4 2 1 7 7 C 1.53002 * 59.98677 * 252.52455 * 6 4 2 8 8 H 1.09002 * 117.50271 * 252.50239 * 7 6 4 9 9 N 1.46901 * 117.49822 * 107.49999 * 7 6 4 10 10 C 1.46903 * 110.99797 * 132.21327 * 9 7 6 11 11 H 1.08996 * 109.47165 * 35.00142 * 10 9 7 12 12 C 1.52997 * 109.47075 * 274.99771 * 10 9 7 13 13 C 1.53006 * 109.46947 * 154.99814 * 10 9 7 14 14 C 1.50697 * 109.47305 * 294.99798 * 13 10 9 15 15 H 1.08004 * 119.99780 * 0.02562 * 14 13 10 16 16 C 1.37874 * 119.99997 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99878 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00036 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47264 * 89.99516 * 18 16 14 20 20 H 1.48494 * 109.47209 * 209.99368 * 18 16 14 21 21 H 1.48503 * 109.47333 * 329.99715 * 18 16 14 22 22 H 1.08998 * 109.46983 * 299.99909 * 1 2 3 23 23 H 1.09003 * 109.47047 * 60.00378 * 1 2 3 24 24 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47432 * 239.99813 * 2 1 3 26 26 H 1.09005 * 109.47133 * 173.41060 * 3 2 1 27 27 H 1.08997 * 109.47274 * 293.41019 * 3 2 1 28 28 H 1.09002 * 109.47423 * 53.41671 * 3 2 1 29 29 H 1.08998 * 109.46883 * 205.66528 * 5 4 2 30 30 H 1.08997 * 109.46817 * 325.67067 * 5 4 2 31 31 H 1.09004 * 109.46747 * 85.66782 * 5 4 2 32 32 H 1.09003 * 117.49434 * 145.03979 * 6 4 2 33 33 H 1.09002 * 117.51391 * 0.02562 * 6 4 2 34 34 H 1.00898 * 111.00077 * 8.25375 * 9 7 6 35 35 H 1.09005 * 109.46838 * 300.00275 * 12 10 9 36 36 H 1.09001 * 109.46862 * 59.99889 * 12 10 9 37 37 H 1.08998 * 109.47518 * 180.02562 * 12 10 9 38 38 H 1.08998 * 109.46961 * 174.99799 * 13 10 9 39 39 H 1.08997 * 109.46915 * 54.99875 * 13 10 9 40 40 H 0.97001 * 119.99807 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0261 0.1024 2.5386 6 6 3.1750 -1.7323 1.0682 7 6 1.7555 -2.2201 1.3653 8 1 1.5584 -2.6194 2.3602 9 7 1.0137 -2.8566 0.2687 10 6 0.3952 -4.1134 0.7113 11 1 0.0759 -4.0155 1.7489 12 6 1.4121 -5.2506 0.5957 13 6 -0.8178 -4.4224 -0.1685 14 6 -1.8713 -3.3650 0.0388 15 1 -1.6933 -2.5535 0.7289 16 6 -3.0619 -3.4331 -0.6531 17 7 -3.9811 -2.5100 -0.4725 18 14 -3.3694 -4.8364 -1.8470 19 1 -4.0093 -5.9671 -1.1277 20 1 -4.2656 -4.3722 -2.9363 21 1 -2.0779 -5.2857 -2.4261 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1236 1.4448 0.1179 27 1 1.7761 1.9211 -0.9430 28 1 1.5836 1.9892 0.8252 29 1 2.7819 -0.2821 3.2235 30 1 2.2430 1.1449 2.3061 31 1 1.0433 0.0309 3.0047 32 1 3.9116 -1.8104 1.8678 33 1 3.5586 -1.8834 0.0592 34 1 1.6101 -3.0089 -0.5308 35 1 1.7314 -5.3484 -0.4419 36 1 2.2763 -5.0303 1.2225 37 1 0.9531 -6.1832 0.9237 38 1 -1.2235 -5.3974 0.1015 39 1 -0.5142 -4.4325 -1.2153 40 1 -4.8189 -2.5581 -0.9590 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695841567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:12 Heat of formation + Delta-G solvation = -12.281535 kcal Electronic energy + Delta-G solvation = -16509.372226 eV Core-core repulsion = 14130.415025 eV Total energy + Delta-G solvation = -2378.957201 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19356 -37.31568 -34.72935 -33.85096 -31.04736 -29.50512 -28.32956 -27.64561 -24.62238 -23.30452 -22.42627 -21.32100 -19.00182 -18.72672 -16.75881 -16.54717 -16.04200 -15.23700 -14.99779 -14.79922 -14.40226 -14.14009 -13.95727 -13.69590 -13.61804 -13.35579 -13.20072 -12.98508 -12.63138 -12.43558 -12.40047 -12.16329 -11.91321 -11.76570 -11.60671 -11.51040 -11.26325 -11.09523 -10.98867 -10.62494 -10.33591 -8.65351 -8.11456 -6.08827 1.38232 1.40581 1.50963 2.45736 2.96690 3.20692 3.37985 3.89602 4.04797 4.11824 4.22593 4.30864 4.47109 4.54730 4.56906 4.63637 4.73178 4.86502 4.92722 4.97556 4.99040 5.04536 5.11908 5.12853 5.17862 5.20538 5.24695 5.32642 5.34493 5.36960 5.53467 5.59463 5.72726 5.81271 5.98822 6.45002 6.58862 6.78336 6.99889 7.51002 9.05422 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.008515 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.225997 B = 3287.614291 C = 3964.797726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.036 4.036 3 C -0.141 4.141 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.180 4.180 7 C 0.028 3.972 8 H 0.096 0.904 9 N -0.642 5.642 10 C 0.105 3.895 11 H 0.053 0.947 12 C -0.169 4.169 13 C -0.004 4.004 14 C -0.480 4.480 15 H 0.040 0.960 16 C -0.004 4.004 17 N -0.957 5.957 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.293 1.293 21 H -0.250 1.250 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.337 0.663 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.231 1.126 2.448 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.055 4.055 3 C -0.198 4.198 4 C -0.122 4.122 5 C -0.171 4.171 6 C -0.219 4.219 7 C -0.083 4.083 8 H 0.114 0.886 9 N -0.270 5.270 10 C -0.004 4.004 11 H 0.072 0.928 12 C -0.228 4.228 13 C -0.042 4.042 14 C -0.518 4.518 15 H 0.059 0.941 16 C -0.198 4.198 17 N -0.600 5.600 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.220 1.220 21 H -0.174 1.174 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.484 1.518 2.481 15.755 hybrid contribution -0.267 -0.890 -0.508 1.059 sum 15.217 0.627 1.973 15.358 Atomic orbital electron populations 1.21819 0.96270 1.03486 0.98563 1.20327 0.94218 0.95595 0.95358 1.21867 1.01147 0.95392 1.01360 1.21820 1.02303 0.91093 0.96996 1.21382 1.01057 1.00174 0.94459 1.23755 0.91473 1.03655 1.03022 1.22549 0.94814 0.96073 0.94909 0.88566 1.60041 1.35015 1.25508 1.06458 1.21382 0.93585 0.87540 0.97920 0.92825 1.22453 0.99146 0.99200 1.01963 1.19587 0.93753 0.95058 0.95779 1.21296 0.98731 1.08992 1.22821 0.94137 1.25896 0.96319 0.98523 0.99109 1.70088 1.07931 1.37006 1.45015 0.85810 0.78644 0.79881 0.79079 1.19832 1.21993 1.17381 0.95153 0.95276 0.90884 0.92356 0.91563 0.93128 0.92597 0.91476 0.90819 0.94047 0.87565 0.88632 0.84307 0.92353 0.91880 0.92129 0.96602 0.96690 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 9.04 71.98 0.65 -5.00 16 2 C -0.04 -1.10 2.49 -10.79 -0.03 -1.12 16 3 C -0.14 -3.43 8.18 71.98 0.59 -2.84 16 4 C -0.12 -3.31 1.78 -52.15 -0.09 -3.40 16 5 C -0.11 -2.76 9.62 71.98 0.69 -2.07 16 6 C -0.18 -4.15 9.52 30.62 0.29 -3.86 16 7 C 0.03 0.82 5.63 44.92 0.25 1.08 16 8 H 0.10 2.95 7.60 -2.39 -0.02 2.93 16 9 N -0.64 -22.51 3.97 -469.44 -1.86 -24.37 16 10 C 0.11 3.93 2.51 44.92 0.11 4.04 16 11 H 0.05 2.15 7.55 -2.39 -0.02 2.13 16 12 C -0.17 -4.79 9.16 71.98 0.66 -4.13 16 13 C 0.00 -0.18 3.72 29.85 0.11 -0.07 16 14 C -0.48 -27.44 9.12 25.60 0.23 -27.21 16 15 H 0.04 2.59 7.14 -2.91 -0.02 2.57 16 16 C 0.00 -0.24 5.47 84.65 0.46 0.23 16 17 N -0.96 -61.49 13.96 21.45 0.30 -61.19 16 18 Si 0.94 45.56 27.47 68.60 1.88 47.44 16 19 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 21 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 3.46 5.21 -2.39 -0.01 3.45 16 25 H 0.06 1.80 7.95 -2.39 -0.02 1.78 16 26 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.34 6.77 -2.39 -0.02 1.32 16 29 H 0.07 1.37 7.90 -2.39 -0.02 1.35 16 30 H 0.07 1.61 5.77 -2.39 -0.01 1.59 16 31 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.11 2.04 8.05 -2.39 -0.02 2.02 16 33 H 0.10 2.10 8.02 -2.39 -0.02 2.08 16 34 H 0.34 10.82 8.23 -89.70 -0.74 10.08 16 35 H 0.06 1.57 8.13 -2.38 -0.02 1.55 16 36 H 0.06 1.55 8.07 -2.39 -0.02 1.53 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.02 0.71 7.57 -2.39 -0.02 0.70 16 39 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 40 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -64.91 310.71 4.45 -60.46 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.19 Total: 22.02 kcal Atomic # 6 Polarization: -48.30 SS G_CDS: 3.94 Total: -44.36 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.57 Total: -85.56 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -64.91 4.45 -60.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.182 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds