Wall clock time and date at job start Mon Mar 30 2020 02:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46930 * 2 1 4 4 C 1.53001 * 109.47076 * 240.00273 * 2 1 3 5 5 C 1.50701 * 109.46930 * 174.99806 * 4 2 1 6 6 H 1.07996 * 120.00211 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99800 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99739 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99911 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47334 * 90.00142 * 9 7 5 11 11 H 1.48507 * 109.46943 * 209.99983 * 9 7 5 12 12 H 1.48492 * 109.47387 * 330.00030 * 9 7 5 13 13 N 1.46901 * 109.47751 * 119.99850 * 2 1 3 14 14 C 1.46898 * 110.99830 * 275.00269 * 13 2 1 15 15 H 1.09001 * 109.47062 * 34.99735 * 14 13 2 16 16 C 1.52997 * 109.47123 * 274.99462 * 14 13 2 17 17 C 1.53006 * 109.47006 * 154.99481 * 14 13 2 18 18 C 1.52995 * 109.47234 * 295.00220 * 17 14 13 19 19 C 1.52996 * 109.47236 * 180.02562 * 18 17 14 20 20 C 1.53003 * 117.49997 * 243.74662 * 19 18 17 21 21 C 1.53004 * 117.49934 * 175.08556 * 19 18 17 22 22 H 1.09002 * 109.47349 * 299.99528 * 1 2 3 23 23 H 1.08999 * 109.47716 * 60.00108 * 1 2 3 24 24 H 1.09008 * 109.46867 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46800 * 294.99231 * 4 2 1 26 26 H 1.08995 * 109.47225 * 54.99385 * 4 2 1 27 27 H 0.97000 * 119.99840 * 179.97438 * 8 7 5 28 28 H 1.00893 * 111.00124 * 151.04782 * 13 2 1 29 29 H 1.09001 * 109.47375 * 300.00082 * 16 14 13 30 30 H 1.09002 * 109.46777 * 60.00637 * 16 14 13 31 31 H 1.09000 * 109.47140 * 180.02562 * 16 14 13 32 32 H 1.09007 * 109.46744 * 54.99841 * 17 14 13 33 33 H 1.08995 * 109.46794 * 175.00086 * 17 14 13 34 34 H 1.09006 * 109.47389 * 299.99793 * 18 17 14 35 35 H 1.09003 * 109.47743 * 59.99455 * 18 17 14 36 36 H 1.08994 * 115.55023 * 29.41509 * 19 18 17 37 37 H 1.08999 * 117.49812 * 359.97438 * 20 19 18 38 38 H 1.08995 * 117.50232 * 145.01438 * 20 19 18 39 39 H 1.09001 * 117.49430 * 214.97966 * 21 19 18 40 40 H 1.08998 * 117.49831 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5397 7 6 4.2304 -1.1934 -2.3579 8 7 3.5764 -1.8385 -3.2990 9 14 6.0920 -1.0609 -2.4370 10 1 6.7010 -2.2128 -1.7246 11 1 6.5290 -1.0694 -3.8563 12 1 6.5260 0.2048 -1.7930 13 7 2.0198 -0.6924 1.1994 14 6 2.0825 0.2227 2.3468 15 1 1.2576 0.9330 2.2906 16 6 3.4111 0.9810 2.3222 17 6 1.9771 -0.5796 3.6454 18 6 0.5985 -1.2380 3.7276 19 6 0.4929 -2.0397 5.0264 20 6 0.3203 -3.5554 4.9090 21 6 -0.8568 -2.6827 5.3520 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 1.7517 -1.7715 -1.2056 26 1 1.6053 -0.2617 -2.1370 27 1 4.0608 -2.2452 -4.0345 28 1 2.9174 -1.1204 1.0287 29 1 4.2360 0.2707 2.3785 30 1 3.4861 1.5526 1.3972 31 1 3.4579 1.6597 3.1739 32 1 2.7488 -1.3493 3.6605 33 1 2.1126 0.0876 4.4966 34 1 -0.1732 -0.4683 3.7125 35 1 0.4630 -1.9051 2.8763 36 1 1.0855 -1.6638 5.8604 37 1 0.2815 -3.9814 3.9064 38 1 0.7990 -4.1767 5.6659 39 1 -1.1518 -2.7301 6.4003 40 1 -1.6693 -2.5349 4.6407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:45 Heat of formation + Delta-G solvation = -11.586434 kcal Electronic energy + Delta-G solvation = -15928.109706 eV Core-core repulsion = 13549.182647 eV Total energy + Delta-G solvation = -2378.927059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.05117 -36.91046 -33.89431 -32.15277 -29.95685 -27.51721 -27.33984 -24.00329 -22.99476 -22.31042 -20.20263 -19.98244 -19.40841 -16.31454 -15.69415 -15.17567 -14.75109 -14.37044 -14.13614 -13.50005 -13.10399 -12.75741 -12.61429 -12.12418 -11.75028 -11.55159 -11.48330 -11.41085 -11.20054 -11.03970 -10.97965 -10.81060 -10.60471 -10.38349 -10.34027 -10.10412 -9.93292 -9.67008 -9.18471 -9.02356 -8.37576 -7.51821 -6.00769 -4.03357 3.30389 3.37246 3.39477 3.88349 4.44573 4.73865 4.94406 5.01413 5.04473 5.33448 5.38821 5.41835 5.62485 5.65843 5.71209 5.81101 5.93647 5.99337 6.02844 6.13331 6.16574 6.18240 6.22700 6.27192 6.33288 6.43254 6.51900 6.66782 6.68503 6.76807 6.98303 7.00636 7.59984 7.67571 7.99889 8.14481 8.35965 8.42784 9.03102 9.60613 11.10242 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.005922 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.006183 B = 4726.763181 C = 4813.838167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.675 5.675 14 C 0.081 3.919 15 H 0.067 0.933 16 C -0.180 4.180 17 C -0.100 4.100 18 C -0.081 4.081 19 C -0.149 4.149 20 C -0.181 4.181 21 C -0.188 4.188 22 H 0.035 0.965 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.025 0.975 26 H 0.019 0.981 27 H 0.260 0.740 28 H 0.354 0.646 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.211 1.522 14.352 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.559 4.559 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.309 5.309 14 C -0.029 4.029 15 H 0.085 0.915 16 C -0.239 4.239 17 C -0.138 4.138 18 C -0.118 4.118 19 C -0.167 4.167 20 C -0.218 4.218 21 C -0.225 4.225 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.175 0.825 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.803 1.169 14.336 15.510 hybrid contribution 1.898 0.585 -0.345 2.016 sum -3.905 1.754 13.991 14.631 Atomic orbital electron populations 1.21802 0.96956 1.01165 0.99300 1.21583 0.93096 0.95938 0.91576 0.95397 1.19271 0.95380 0.96140 0.90892 1.21191 0.92245 1.34272 1.08234 0.92922 1.24987 0.98113 0.95278 0.95749 1.69963 1.35419 1.35691 1.12005 0.86658 0.86143 0.78377 0.77193 1.20644 1.21281 1.20045 1.60660 1.34620 1.31482 1.04135 1.21560 0.95897 0.93465 0.92023 0.91484 1.22495 0.99087 1.00843 1.01470 1.21515 0.97367 0.98823 0.96106 1.21089 0.96937 0.98778 0.94994 1.22439 0.99322 0.94720 1.00198 1.23029 1.02441 0.93590 1.02759 1.22945 0.92323 1.05756 1.01435 0.94569 0.93546 0.92778 0.95702 0.96265 0.93013 0.82526 0.92602 0.92378 0.93328 0.92068 0.92914 0.92632 0.90043 0.88534 0.88523 0.89452 0.89474 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.40 37.15 0.35 -2.07 16 2 C 0.09 1.80 2.40 -67.71 -0.16 1.64 16 3 H 0.03 0.60 7.11 -51.93 -0.37 0.23 16 4 C 0.02 0.52 4.57 -27.88 -0.13 0.39 16 5 C -0.52 -14.22 8.12 -34.44 -0.28 -14.50 16 6 H 0.05 1.39 7.49 -52.49 -0.39 1.00 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -12.63 5.51 -99.74 -0.55 -13.18 16 14 C 0.08 1.27 2.40 -67.71 -0.16 1.10 16 15 H 0.07 1.05 7.11 -51.93 -0.37 0.68 16 16 C -0.18 -2.77 9.15 37.16 0.34 -2.43 16 17 C -0.10 -1.35 4.85 -26.73 -0.13 -1.48 16 18 C -0.08 -1.06 5.38 -26.74 -0.14 -1.20 16 19 C -0.15 -1.73 5.73 -90.62 -0.52 -2.25 16 20 C -0.18 -2.04 10.18 -26.69 -0.27 -2.32 16 21 C -0.19 -1.99 10.26 -26.69 -0.27 -2.26 16 22 H 0.04 0.58 7.43 -51.93 -0.39 0.19 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.35 7.32 6.95 -39.30 -0.27 7.05 16 29 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.06 0.99 7.43 -51.93 -0.39 0.61 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.24 7.49 -51.93 -0.39 0.85 16 36 H 0.10 1.05 8.07 -51.93 -0.42 0.63 16 37 H 0.10 1.16 8.03 -51.93 -0.42 0.75 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -28.03 320.66 -9.09 -37.11 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.61 Total: 4.39 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -1.48 Total: -23.77 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.19 Total: -38.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.03 -9.09 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.528 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds