Wall clock time and date at job start Mon Mar 30 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46930 * 2 1 4 4 C 1.53001 * 109.47076 * 240.00273 * 2 1 3 5 5 C 1.50701 * 109.46930 * 174.99806 * 4 2 1 6 6 H 1.07996 * 120.00211 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99800 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99739 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99911 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47334 * 90.00142 * 9 7 5 11 11 H 1.48507 * 109.46943 * 209.99983 * 9 7 5 12 12 H 1.48492 * 109.47387 * 330.00030 * 9 7 5 13 13 N 1.46901 * 109.47751 * 119.99850 * 2 1 3 14 14 C 1.46898 * 110.99830 * 275.00269 * 13 2 1 15 15 H 1.09001 * 109.47062 * 34.99735 * 14 13 2 16 16 C 1.52997 * 109.47123 * 274.99462 * 14 13 2 17 17 C 1.53006 * 109.47006 * 154.99481 * 14 13 2 18 18 C 1.52995 * 109.47234 * 295.00220 * 17 14 13 19 19 C 1.52996 * 109.47236 * 180.02562 * 18 17 14 20 20 C 1.53003 * 117.49997 * 243.74662 * 19 18 17 21 21 C 1.53004 * 117.49934 * 175.08556 * 19 18 17 22 22 H 1.09002 * 109.47349 * 299.99528 * 1 2 3 23 23 H 1.08999 * 109.47716 * 60.00108 * 1 2 3 24 24 H 1.09008 * 109.46867 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46800 * 294.99231 * 4 2 1 26 26 H 1.08995 * 109.47225 * 54.99385 * 4 2 1 27 27 H 0.97000 * 119.99840 * 179.97438 * 8 7 5 28 28 H 1.00893 * 111.00124 * 151.04782 * 13 2 1 29 29 H 1.09001 * 109.47375 * 300.00082 * 16 14 13 30 30 H 1.09002 * 109.46777 * 60.00637 * 16 14 13 31 31 H 1.09000 * 109.47140 * 180.02562 * 16 14 13 32 32 H 1.09007 * 109.46744 * 54.99841 * 17 14 13 33 33 H 1.08995 * 109.46794 * 175.00086 * 17 14 13 34 34 H 1.09006 * 109.47389 * 299.99793 * 18 17 14 35 35 H 1.09003 * 109.47743 * 59.99455 * 18 17 14 36 36 H 1.08994 * 115.55023 * 29.41509 * 19 18 17 37 37 H 1.08999 * 117.49812 * 359.97438 * 20 19 18 38 38 H 1.08995 * 117.50232 * 145.01438 * 20 19 18 39 39 H 1.09001 * 117.49430 * 214.97966 * 21 19 18 40 40 H 1.08998 * 117.49831 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5397 7 6 4.2304 -1.1934 -2.3579 8 7 3.5764 -1.8385 -3.2990 9 14 6.0920 -1.0609 -2.4370 10 1 6.7010 -2.2128 -1.7246 11 1 6.5290 -1.0694 -3.8563 12 1 6.5260 0.2048 -1.7930 13 7 2.0198 -0.6924 1.1994 14 6 2.0825 0.2227 2.3468 15 1 1.2576 0.9330 2.2906 16 6 3.4111 0.9810 2.3222 17 6 1.9771 -0.5796 3.6454 18 6 0.5985 -1.2380 3.7276 19 6 0.4929 -2.0397 5.0264 20 6 0.3203 -3.5554 4.9090 21 6 -0.8568 -2.6827 5.3520 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 1.7517 -1.7715 -1.2056 26 1 1.6053 -0.2617 -2.1370 27 1 4.0608 -2.2452 -4.0345 28 1 2.9174 -1.1204 1.0287 29 1 4.2360 0.2707 2.3785 30 1 3.4861 1.5526 1.3972 31 1 3.4579 1.6597 3.1739 32 1 2.7488 -1.3493 3.6605 33 1 2.1126 0.0876 4.4966 34 1 -0.1732 -0.4683 3.7125 35 1 0.4630 -1.9051 2.8763 36 1 1.0855 -1.6638 5.8604 37 1 0.2815 -3.9814 3.9064 38 1 0.7990 -4.1767 5.6659 39 1 -1.1518 -2.7301 6.4003 40 1 -1.6693 -2.5349 4.6407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:44 Heat of formation + Delta-G solvation = -26.343719 kcal Electronic energy + Delta-G solvation = -15928.749630 eV Core-core repulsion = 13549.182647 eV Total energy + Delta-G solvation = -2379.566983 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.28790 -38.09048 -35.56909 -34.03321 -31.17766 -29.38586 -28.86359 -25.28474 -24.83907 -23.15860 -21.35053 -21.14353 -21.02972 -18.48226 -16.92770 -16.59996 -16.34008 -15.70367 -15.45535 -14.84735 -14.47826 -14.26459 -13.90533 -13.65213 -13.43893 -13.29889 -12.89801 -12.68541 -12.58281 -12.40112 -12.33315 -12.30484 -12.18844 -11.87381 -11.73755 -11.48282 -11.19960 -10.94542 -10.90037 -10.60096 -10.56243 -9.03130 -8.18051 -6.27852 1.39581 1.39938 1.50251 2.40664 3.00796 3.13966 3.53517 3.77023 4.10634 4.13935 4.23424 4.28430 4.41352 4.49347 4.57697 4.64568 4.69850 4.75119 4.84359 4.88761 4.92329 5.02364 5.08993 5.15499 5.20062 5.25715 5.28949 5.32816 5.35074 5.42852 5.45345 5.54186 5.64088 5.70655 5.87089 6.23770 6.54304 6.75507 6.87729 7.40703 8.93774 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.005922 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.006183 B = 4726.763181 C = 4813.838167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.098 3.902 3 H 0.023 0.977 4 C 0.028 3.972 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.676 5.676 14 C 0.081 3.919 15 H 0.072 0.928 16 C -0.176 4.176 17 C -0.092 4.092 18 C -0.076 4.076 19 C -0.154 4.154 20 C -0.190 4.190 21 C -0.179 4.179 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.047 0.953 25 H -0.005 1.005 26 H -0.009 1.009 27 H 0.262 0.738 28 H 0.340 0.660 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 2.325 16.511 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.012 4.012 3 H 0.041 0.959 4 C -0.010 4.010 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.308 5.308 14 C -0.029 4.029 15 H 0.090 0.910 16 C -0.234 4.234 17 C -0.130 4.130 18 C -0.113 4.113 19 C -0.172 4.172 20 C -0.227 4.227 21 C -0.216 4.216 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.013 0.987 26 H 0.009 0.991 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.351 1.985 16.516 17.474 hybrid contribution 1.712 0.336 -1.009 2.016 sum -3.639 2.321 15.507 16.096 Atomic orbital electron populations 1.21706 0.94821 1.01199 1.00665 1.21369 0.94749 0.94788 0.90322 0.95948 1.19132 0.94898 0.94603 0.92337 1.21529 0.93208 1.33778 1.08195 0.92288 1.25883 1.03197 0.94940 0.95412 1.70101 1.37462 1.36860 1.12794 0.85541 0.80033 0.78805 0.77213 1.19834 1.21104 1.19009 1.60706 1.33713 1.32188 1.04155 1.21684 0.96301 0.93344 0.91608 0.91002 1.22436 0.98564 1.00892 1.01545 1.21456 0.97292 0.98736 0.95519 1.20989 0.96827 0.98523 0.95000 1.22420 1.00463 0.94548 0.99731 1.23061 1.03426 0.93718 1.02480 1.23017 0.91737 1.04437 1.02390 0.92057 0.93280 0.93413 0.98663 0.99071 0.92937 0.84055 0.93160 0.94523 0.90556 0.92858 0.90494 0.92277 0.92613 0.87250 0.89996 0.88218 0.87690 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.40 71.98 0.68 -3.80 16 2 C 0.10 4.05 2.40 44.91 0.11 4.15 16 3 H 0.02 0.96 7.11 -2.39 -0.02 0.94 16 4 C 0.03 1.46 4.57 29.85 0.14 1.59 16 5 C -0.53 -29.34 8.12 25.60 0.21 -29.13 16 6 H 0.06 3.13 7.49 -2.91 -0.02 3.11 16 7 C 0.00 0.20 5.46 84.66 0.46 0.67 16 8 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 9 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 N -0.68 -25.16 5.51 -469.47 -2.59 -27.75 16 14 C 0.08 2.38 2.40 44.92 0.11 2.49 16 15 H 0.07 2.08 7.11 -2.39 -0.02 2.06 16 16 C -0.18 -5.08 9.15 71.98 0.66 -4.42 16 17 C -0.09 -2.28 4.85 30.59 0.15 -2.13 16 18 C -0.08 -1.87 5.38 30.59 0.16 -1.71 16 19 C -0.15 -3.23 5.73 -10.79 -0.06 -3.30 16 20 C -0.19 -4.03 10.18 30.62 0.31 -3.72 16 21 C -0.18 -3.41 10.26 30.62 0.31 -3.10 16 22 H 0.06 1.86 7.43 -2.39 -0.02 1.84 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 25 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.34 14.23 6.95 -89.70 -0.62 13.60 16 29 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 30 H 0.04 1.20 7.43 -2.39 -0.02 1.18 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.40 8.14 -2.38 -0.02 1.39 16 35 H 0.06 1.67 7.49 -2.39 -0.02 1.65 16 36 H 0.11 2.05 8.07 -2.39 -0.02 2.03 16 37 H 0.08 1.96 8.03 -2.39 -0.02 1.95 16 38 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -60.57 320.66 3.30 -57.27 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.35 Total: 23.14 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 3.23 Total: -42.40 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.30 Total: -84.22 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -60.57 3.30 -57.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.922 kcal (2) G-P(sol) polarization free energy of solvation -60.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds