Wall clock time and date at job start Mon Mar 30 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46897 * 2 1 4 4 C 1.52994 * 109.47208 * 239.99623 * 2 1 3 5 5 C 1.50707 * 109.47272 * 175.00063 * 4 2 1 6 6 H 1.08001 * 119.99388 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00162 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99751 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47105 * 90.00165 * 9 7 5 11 11 H 1.48505 * 109.47044 * 209.99573 * 9 7 5 12 12 H 1.48491 * 109.47375 * 330.00140 * 9 7 5 13 13 N 1.46899 * 109.46976 * 119.99814 * 2 1 3 14 14 C 1.46898 * 111.00208 * 272.81620 * 13 2 1 15 15 H 1.09000 * 109.47008 * 340.76008 * 14 13 2 16 16 C 1.53002 * 109.47276 * 100.75640 * 14 13 2 17 17 C 1.52996 * 109.47721 * 220.75852 * 14 13 2 18 18 C 1.53002 * 109.47187 * 64.99372 * 17 14 13 19 19 C 1.52999 * 109.47504 * 180.02562 * 18 17 14 20 20 C 1.53000 * 117.50047 * 243.75445 * 19 18 17 21 21 C 1.52999 * 117.50308 * 175.09152 * 19 18 17 22 22 H 1.08998 * 109.47423 * 179.50430 * 1 2 3 23 23 H 1.09004 * 109.47316 * 59.50681 * 1 2 3 24 24 H 1.09000 * 109.47208 * 299.51004 * 1 2 3 25 25 H 1.08996 * 109.47558 * 295.00053 * 4 2 1 26 26 H 1.08997 * 109.47218 * 55.00298 * 4 2 1 27 27 H 0.96995 * 120.00373 * 180.02562 * 8 7 5 28 28 H 1.00903 * 111.00075 * 148.86621 * 13 2 1 29 29 H 1.08999 * 109.47010 * 55.60039 * 16 14 13 30 30 H 1.09000 * 109.47523 * 175.60313 * 16 14 13 31 31 H 1.09000 * 109.46926 * 295.60233 * 16 14 13 32 32 H 1.08999 * 109.47469 * 184.99924 * 17 14 13 33 33 H 1.09002 * 109.47288 * 305.00256 * 17 14 13 34 34 H 1.08999 * 109.47367 * 300.00615 * 18 17 14 35 35 H 1.09007 * 109.46939 * 60.00879 * 18 17 14 36 36 H 1.09004 * 115.54388 * 29.41824 * 19 18 17 37 37 H 1.08995 * 117.50046 * 359.97438 * 20 19 18 38 38 H 1.09000 * 117.49626 * 145.02000 * 20 19 18 39 39 H 1.08999 * 117.49593 * 214.98587 * 21 19 18 40 40 H 1.08998 * 117.49286 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0862 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 3.5764 -1.8371 -3.2999 9 14 6.0919 -1.0603 -2.4372 10 1 6.7008 -2.2129 -1.7257 11 1 6.5290 -1.0678 -3.8564 12 1 6.5260 0.2048 -1.7922 13 7 2.0196 -0.6925 1.1995 14 6 2.1315 0.2344 2.3336 15 1 2.1601 1.2593 1.9638 16 6 0.9241 0.0589 3.2569 17 6 3.4153 -0.0632 3.1109 18 6 4.6277 0.2321 2.2255 19 6 5.9115 -0.0661 3.0024 20 6 6.8497 1.1069 3.2936 21 6 7.2377 0.0569 2.2495 22 1 -0.3634 -1.0276 -0.0089 23 1 -0.3634 0.5215 -0.8855 24 1 -0.3634 0.5062 0.8943 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.0607 -2.2439 -4.0352 28 1 2.9003 -1.1504 1.0185 29 1 0.8506 -0.9842 3.5644 30 1 1.0453 0.6897 4.1375 31 1 0.0163 0.3461 2.7263 32 1 3.4545 0.5638 4.0016 33 1 3.4272 -1.1129 3.4046 34 1 4.5885 -0.3949 1.3347 35 1 4.6159 1.2818 1.9318 36 1 5.8325 -0.8472 3.7587 37 1 6.5525 2.0910 2.9313 38 1 7.3884 1.0972 4.2412 39 1 8.0314 -0.6431 2.5106 40 1 7.1955 0.3499 1.2005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:46 Heat of formation + Delta-G solvation = -8.551469 kcal Electronic energy + Delta-G solvation = -16281.295236 eV Core-core repulsion = 13902.499783 eV Total energy + Delta-G solvation = -2378.795453 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.14997 -36.78515 -33.87095 -32.16937 -29.76246 -28.03812 -27.20760 -23.82795 -23.02304 -22.21451 -20.18673 -19.89827 -19.44047 -16.35369 -15.50190 -15.20626 -15.06612 -14.38636 -13.85184 -13.81315 -13.28771 -12.54175 -12.31189 -12.02049 -11.80436 -11.60065 -11.45393 -11.30210 -11.18006 -11.07365 -10.96097 -10.82713 -10.64373 -10.40082 -10.30325 -10.11527 -9.86633 -9.59113 -9.03875 -9.01722 -8.38045 -7.56756 -6.01318 -4.03975 3.29594 3.36600 3.37875 3.96676 4.43623 4.76416 4.93817 5.08690 5.10833 5.32091 5.35418 5.46110 5.56308 5.73294 5.80853 5.85891 5.98321 6.01815 6.06660 6.12026 6.19273 6.25103 6.25714 6.32873 6.36086 6.39068 6.56357 6.59466 6.71909 6.75979 6.99178 7.03365 7.60687 7.68466 7.99572 8.15824 8.37395 8.42598 9.02598 9.59971 11.09731 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.012288 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.196494 B = 2278.106428 C = 4016.997752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.088 3.912 3 H 0.029 0.971 4 C 0.018 3.982 5 C -0.522 4.522 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.081 3.919 15 H 0.043 0.957 16 C -0.137 4.137 17 C -0.120 4.120 18 C -0.102 4.102 19 C -0.143 4.143 20 C -0.186 4.186 21 C -0.185 4.185 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.260 0.740 28 H 0.355 0.645 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 4.324 12.303 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 H 0.047 0.953 4 C -0.019 4.019 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.316 5.316 14 C -0.030 4.030 15 H 0.061 0.939 16 C -0.195 4.195 17 C -0.158 4.158 18 C -0.139 4.139 19 C -0.162 4.162 20 C -0.223 4.223 21 C -0.222 4.222 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.178 0.822 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.711 3.995 12.305 12.957 hybrid contribution 1.916 0.558 -0.442 2.044 sum 2.627 4.553 11.863 12.975 Atomic orbital electron populations 1.21869 0.96982 1.01196 0.99388 1.21694 0.93292 0.95662 0.91489 0.95336 1.19313 0.95458 0.96164 0.91003 1.21232 0.92186 1.34356 1.08247 0.92645 1.24973 0.98001 0.95287 0.95754 1.69958 1.35391 1.35671 1.11975 0.86718 0.86320 0.78514 0.77260 1.20487 1.21325 1.19900 1.60632 1.36035 1.29984 1.04906 1.21597 0.93586 0.95244 0.92567 0.93861 1.21869 0.98247 1.01377 0.97980 1.21849 0.93878 1.01824 0.98260 1.21388 0.91717 1.01954 0.98836 1.22330 0.91421 1.00283 1.02126 1.23020 1.04483 0.94665 1.00090 1.22985 0.98724 1.02469 0.98001 0.92799 0.93652 0.94222 0.95704 0.96197 0.93012 0.82195 0.92519 0.93838 0.92823 0.92167 0.91489 0.89615 0.92203 0.88072 0.89067 0.89386 0.89142 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.40 37.16 0.35 -2.16 16 2 C 0.09 1.84 2.57 -67.72 -0.17 1.67 16 3 H 0.03 0.62 7.30 -51.93 -0.38 0.24 16 4 C 0.02 0.46 4.56 -27.88 -0.13 0.33 16 5 C -0.52 -14.09 8.11 -34.44 -0.28 -14.37 16 6 H 0.06 1.44 5.92 -52.49 -0.31 1.13 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 9 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -13.03 6.17 -99.75 -0.62 -13.64 16 14 C 0.08 1.29 2.66 -67.71 -0.18 1.11 16 15 H 0.04 0.73 7.17 -51.93 -0.37 0.36 16 16 C -0.14 -1.92 9.44 37.16 0.35 -1.57 16 17 C -0.12 -1.72 4.63 -26.73 -0.12 -1.84 16 18 C -0.10 -1.59 5.35 -26.73 -0.14 -1.73 16 19 C -0.14 -1.99 5.73 -90.62 -0.52 -2.51 16 20 C -0.19 -2.32 10.18 -26.69 -0.27 -2.59 16 21 C -0.18 -2.60 10.25 -26.69 -0.27 -2.87 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.65 6.14 -51.93 -0.32 0.33 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.36 7.38 5.06 -39.29 -0.20 7.18 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.77 6.19 -51.93 -0.32 0.45 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.60 5.00 -51.93 -0.26 1.34 16 35 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 36 H 0.10 1.30 8.08 -51.93 -0.42 0.88 16 37 H 0.09 1.13 8.03 -51.93 -0.42 0.72 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -28.07 313.30 -8.86 -36.93 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.19 Total: 6.36 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -1.49 Total: -24.91 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.12 Total: -39.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.07 -8.86 -36.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.374 kcal (2) G-P(sol) polarization free energy of solvation -28.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds