Wall clock time and date at job start Mon Mar 30 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46897 * 2 1 4 4 C 1.52994 * 109.47208 * 239.99623 * 2 1 3 5 5 C 1.50707 * 109.47272 * 175.00063 * 4 2 1 6 6 H 1.08001 * 119.99388 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00162 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99751 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47105 * 90.00165 * 9 7 5 11 11 H 1.48505 * 109.47044 * 209.99573 * 9 7 5 12 12 H 1.48491 * 109.47375 * 330.00140 * 9 7 5 13 13 N 1.46899 * 109.46976 * 119.99814 * 2 1 3 14 14 C 1.46898 * 111.00208 * 272.81620 * 13 2 1 15 15 H 1.09000 * 109.47008 * 340.76008 * 14 13 2 16 16 C 1.53002 * 109.47276 * 100.75640 * 14 13 2 17 17 C 1.52996 * 109.47721 * 220.75852 * 14 13 2 18 18 C 1.53002 * 109.47187 * 64.99372 * 17 14 13 19 19 C 1.52999 * 109.47504 * 180.02562 * 18 17 14 20 20 C 1.53000 * 117.50047 * 243.75445 * 19 18 17 21 21 C 1.52999 * 117.50308 * 175.09152 * 19 18 17 22 22 H 1.08998 * 109.47423 * 179.50430 * 1 2 3 23 23 H 1.09004 * 109.47316 * 59.50681 * 1 2 3 24 24 H 1.09000 * 109.47208 * 299.51004 * 1 2 3 25 25 H 1.08996 * 109.47558 * 295.00053 * 4 2 1 26 26 H 1.08997 * 109.47218 * 55.00298 * 4 2 1 27 27 H 0.96995 * 120.00373 * 180.02562 * 8 7 5 28 28 H 1.00903 * 111.00075 * 148.86621 * 13 2 1 29 29 H 1.08999 * 109.47010 * 55.60039 * 16 14 13 30 30 H 1.09000 * 109.47523 * 175.60313 * 16 14 13 31 31 H 1.09000 * 109.46926 * 295.60233 * 16 14 13 32 32 H 1.08999 * 109.47469 * 184.99924 * 17 14 13 33 33 H 1.09002 * 109.47288 * 305.00256 * 17 14 13 34 34 H 1.08999 * 109.47367 * 300.00615 * 18 17 14 35 35 H 1.09007 * 109.46939 * 60.00879 * 18 17 14 36 36 H 1.09004 * 115.54388 * 29.41824 * 19 18 17 37 37 H 1.08995 * 117.50046 * 359.97438 * 20 19 18 38 38 H 1.09000 * 117.49626 * 145.02000 * 20 19 18 39 39 H 1.08999 * 117.49593 * 214.98587 * 21 19 18 40 40 H 1.08998 * 117.49286 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0862 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 3.5764 -1.8371 -3.2999 9 14 6.0919 -1.0603 -2.4372 10 1 6.7008 -2.2129 -1.7257 11 1 6.5290 -1.0678 -3.8564 12 1 6.5260 0.2048 -1.7922 13 7 2.0196 -0.6925 1.1995 14 6 2.1315 0.2344 2.3336 15 1 2.1601 1.2593 1.9638 16 6 0.9241 0.0589 3.2569 17 6 3.4153 -0.0632 3.1109 18 6 4.6277 0.2321 2.2255 19 6 5.9115 -0.0661 3.0024 20 6 6.8497 1.1069 3.2936 21 6 7.2377 0.0569 2.2495 22 1 -0.3634 -1.0276 -0.0089 23 1 -0.3634 0.5215 -0.8855 24 1 -0.3634 0.5062 0.8943 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.0607 -2.2439 -4.0352 28 1 2.9003 -1.1504 1.0185 29 1 0.8506 -0.9842 3.5644 30 1 1.0453 0.6897 4.1375 31 1 0.0163 0.3461 2.7263 32 1 3.4545 0.5638 4.0016 33 1 3.4272 -1.1129 3.4046 34 1 4.5885 -0.3949 1.3347 35 1 4.6159 1.2818 1.9318 36 1 5.8325 -0.8472 3.7587 37 1 6.5525 2.0910 2.9313 38 1 7.3884 1.0972 4.2412 39 1 8.0314 -0.6431 2.5106 40 1 7.1955 0.3499 1.2005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:46 Heat of formation + Delta-G solvation = -23.792547 kcal Electronic energy + Delta-G solvation = -16281.956138 eV Core-core repulsion = 13902.499783 eV Total energy + Delta-G solvation = -2379.456356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46427 -38.07178 -35.58070 -34.05886 -31.07805 -29.46982 -29.13772 -25.04765 -24.98763 -23.24584 -21.34178 -21.20293 -21.13952 -18.49660 -16.88550 -16.65552 -16.40843 -16.13216 -15.34862 -15.05128 -14.66704 -14.24923 -13.66259 -13.57214 -13.36115 -13.21660 -13.08379 -12.65539 -12.59124 -12.44419 -12.34657 -12.29048 -12.23537 -12.07119 -11.74315 -11.62750 -11.10803 -11.03002 -10.81367 -10.66069 -10.57004 -9.11259 -8.18841 -6.27839 1.36773 1.37426 1.46933 2.38783 2.90572 3.13372 3.51266 3.65534 4.00059 4.05420 4.13683 4.27702 4.32691 4.44600 4.59452 4.67044 4.68275 4.73071 4.75857 4.84836 4.94683 4.98380 5.03953 5.04496 5.15073 5.21313 5.23926 5.26850 5.30196 5.39677 5.46422 5.56969 5.60327 5.63840 5.86039 6.24015 6.54051 6.75913 6.87849 7.40445 8.93145 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.012288 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.196494 B = 2278.106428 C = 4016.997752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.097 3.903 3 H 0.021 0.979 4 C 0.025 3.975 5 C -0.526 4.526 6 H 0.063 0.937 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.682 5.682 14 C 0.077 3.923 15 H 0.035 0.965 16 C -0.130 4.130 17 C -0.110 4.110 18 C -0.098 4.098 19 C -0.151 4.151 20 C -0.166 4.166 21 C -0.202 4.202 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.064 0.936 25 H -0.004 1.004 26 H -0.008 1.008 27 H 0.261 0.739 28 H 0.344 0.656 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 5.153 14.714 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.012 4.012 3 H 0.039 0.961 4 C -0.013 4.013 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.316 5.316 14 C -0.033 4.033 15 H 0.053 0.947 16 C -0.188 4.188 17 C -0.148 4.148 18 C -0.135 4.135 19 C -0.169 4.169 20 C -0.203 4.203 21 C -0.239 4.239 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.014 0.986 26 H 0.010 0.990 27 H 0.070 0.930 28 H 0.165 0.835 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.496 4.839 14.738 15.584 hybrid contribution 1.641 0.314 -1.189 2.051 sum 3.137 5.153 13.549 14.831 Atomic orbital electron populations 1.21783 0.94805 1.01266 1.00800 1.21497 0.94994 0.94450 0.90298 0.96076 1.19187 0.95068 0.94643 0.92380 1.21574 0.93050 1.33681 1.08139 0.91861 1.25820 1.02802 0.95050 0.95489 1.70093 1.37321 1.36952 1.12784 0.85667 0.80603 0.78985 0.77205 1.19695 1.21212 1.18890 1.60719 1.35351 1.30635 1.04927 1.21745 0.95723 0.93979 0.91880 0.94650 1.21808 0.96797 1.01926 0.98289 1.21782 0.92122 1.02472 0.98439 1.21277 0.93672 1.00500 0.98093 1.22339 0.90381 1.01822 1.02359 1.23095 1.02981 0.93869 1.00354 1.23023 0.99474 1.04103 0.97266 0.93357 0.93347 0.91725 0.98600 0.98957 0.92978 0.83537 0.92623 0.91195 0.93186 0.89589 0.91257 0.93205 0.93112 0.86598 0.89156 0.86917 0.87704 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.40 71.98 0.68 -3.98 16 2 C 0.10 4.12 2.57 44.91 0.12 4.23 16 3 H 0.02 0.92 7.30 -2.39 -0.02 0.91 16 4 C 0.02 1.30 4.56 29.85 0.14 1.44 16 5 C -0.53 -29.14 8.11 25.60 0.21 -28.93 16 6 H 0.06 3.35 5.92 -2.91 -0.02 3.33 16 7 C 0.01 0.36 5.46 84.65 0.46 0.83 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 9 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 13 N -0.68 -25.99 6.17 -469.49 -2.90 -28.89 16 14 C 0.08 2.32 2.66 44.91 0.12 2.44 16 15 H 0.04 1.14 7.17 -2.39 -0.02 1.13 16 16 C -0.13 -3.29 9.44 71.98 0.68 -2.61 16 17 C -0.11 -2.92 4.63 30.59 0.14 -2.77 16 18 C -0.10 -2.96 5.35 30.59 0.16 -2.80 16 19 C -0.15 -3.88 5.73 -10.79 -0.06 -3.94 16 20 C -0.17 -3.69 10.18 30.62 0.31 -3.38 16 21 C -0.20 -5.35 10.25 30.62 0.31 -5.04 16 22 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 23 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.06 2.01 6.14 -2.39 -0.01 1.99 16 25 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.34 14.47 5.06 -89.69 -0.45 14.02 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.29 6.19 -2.39 -0.01 1.28 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.87 5.00 -2.39 -0.01 1.86 16 35 H 0.05 1.59 7.88 -2.38 -0.02 1.57 16 36 H 0.12 2.63 8.08 -2.39 -0.02 2.62 16 37 H 0.09 2.02 8.03 -2.39 -0.02 2.01 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -61.26 313.30 3.21 -58.05 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.53 Total: 25.45 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 3.27 Total: -44.51 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.61 Total: -85.41 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -61.26 3.21 -58.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.254 kcal (2) G-P(sol) polarization free energy of solvation -61.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds