Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47394 * 2 1 4 4 C 1.53006 * 109.47054 * 120.00458 * 2 1 3 5 5 C 1.50698 * 109.47184 * 185.00283 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99809 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99912 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47123 * 90.00333 * 9 7 5 11 11 H 1.48506 * 109.46940 * 210.00455 * 9 7 5 12 12 H 1.48493 * 109.47121 * 329.99876 * 9 7 5 13 13 N 1.46904 * 109.47398 * 240.00036 * 2 1 3 14 14 C 1.46903 * 110.99893 * 84.99864 * 13 2 1 15 15 H 1.09003 * 109.47094 * 325.00670 * 14 13 2 16 16 C 1.53000 * 109.46808 * 85.00112 * 14 13 2 17 17 C 1.52992 * 109.47157 * 205.00159 * 14 13 2 18 18 C 1.53004 * 109.47132 * 65.00303 * 17 14 13 19 19 C 1.52997 * 109.47121 * 179.97438 * 18 17 14 20 20 C 1.52995 * 117.50209 * 243.62227 * 19 18 17 21 21 C 1.52994 * 60.00073 * 252.51253 * 20 19 18 22 22 H 1.09002 * 109.47069 * 59.99674 * 1 2 3 23 23 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47070 * 300.00071 * 1 2 3 25 25 H 1.09001 * 109.47002 * 304.99688 * 4 2 1 26 26 H 1.08993 * 109.46955 * 65.00125 * 4 2 1 27 27 H 0.97004 * 119.99097 * 179.97438 * 8 7 5 28 28 H 1.00894 * 111.00324 * 208.95729 * 13 2 1 29 29 H 1.08996 * 109.47429 * 60.00099 * 16 14 13 30 30 H 1.09001 * 109.47459 * 180.02562 * 16 14 13 31 31 H 1.08999 * 109.47234 * 299.99933 * 16 14 13 32 32 H 1.09003 * 109.47023 * 185.00471 * 17 14 13 33 33 H 1.08999 * 109.47622 * 304.99952 * 17 14 13 34 34 H 1.08998 * 109.46843 * 300.00102 * 18 17 14 35 35 H 1.09004 * 109.46605 * 59.99834 * 18 17 14 36 36 H 1.09003 * 115.55079 * 29.33070 * 19 18 17 37 37 H 1.09004 * 117.49857 * 359.97438 * 20 19 18 38 38 H 1.09001 * 117.50134 * 145.01898 * 20 19 18 39 39 H 1.09001 * 117.49832 * 252.50835 * 21 20 19 40 40 H 1.08994 * 117.50344 * 107.48923 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0861 0.5393 7 6 4.2304 -1.1937 2.3578 8 7 5.5412 -1.1013 2.4129 9 14 3.3014 -2.1090 3.6952 10 1 3.1699 -3.5389 3.3167 11 1 4.0452 -2.0024 4.9761 12 1 1.9508 -1.5132 3.8562 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2226 -2.3469 15 1 1.2577 0.9330 -2.2906 16 6 3.4111 0.9809 -2.3223 17 6 1.9771 -0.5796 -3.6454 18 6 0.5984 -1.2379 -3.7277 19 6 0.4927 -2.0396 -5.0265 20 6 -0.5522 -1.5916 -6.0503 21 6 -0.7729 -2.8717 -5.2420 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.6054 -0.2619 2.1370 26 1 1.7517 -1.7716 1.2055 27 1 6.0254 -1.5081 3.1484 28 1 2.9173 -1.1205 -1.0288 29 1 4.2360 0.2707 -2.3785 30 1 3.4576 1.6603 -3.1734 31 1 3.4862 1.5525 -1.3972 32 1 2.1126 0.0876 -4.4966 33 1 2.7487 -1.3493 -3.6607 34 1 0.4629 -1.9050 -2.8764 35 1 -0.1732 -0.4681 -3.7125 36 1 1.4310 -2.4425 -5.4079 37 1 -1.1648 -0.7259 -5.7984 38 1 -0.3015 -1.6995 -7.1056 39 1 -0.6674 -3.8220 -5.7656 40 1 -1.5303 -2.8481 -4.4586 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = -8.249888 kcal Electronic energy + Delta-G solvation = -15907.334012 eV Core-core repulsion = 13528.551636 eV Total energy + Delta-G solvation = -2378.782376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.09696 -36.98922 -33.94730 -32.17181 -30.03209 -28.00841 -27.47445 -24.01990 -22.67210 -22.35880 -20.26160 -19.96685 -19.41564 -16.75943 -15.63579 -15.38916 -14.65206 -14.23441 -14.15989 -13.75180 -12.91342 -12.76929 -12.69886 -12.21486 -12.09071 -11.66979 -11.58825 -11.48177 -11.30222 -11.23231 -11.03512 -10.81647 -10.67004 -10.36337 -10.15449 -9.99020 -9.75656 -9.70347 -9.40450 -9.18137 -8.54342 -7.57925 -6.05634 -4.03593 3.32063 3.39301 3.43531 3.84408 4.45514 4.68754 4.89762 4.97231 4.99059 5.31055 5.35338 5.37780 5.59564 5.64658 5.70268 5.81768 5.87432 5.90234 5.97663 6.08277 6.08829 6.13017 6.17717 6.23906 6.30546 6.44165 6.46723 6.63315 6.68425 6.72093 6.76884 6.84142 7.24320 7.33006 7.78140 7.99780 8.32455 8.50849 8.97247 9.57627 11.07356 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032293 B = 0.005844 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.855393 B = 4790.442542 C = 5018.323426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 H 0.034 0.966 4 C -0.017 4.017 5 C -0.521 4.521 6 H 0.071 0.929 7 C 0.069 3.931 8 N -0.903 5.903 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.677 5.677 14 C 0.083 3.917 15 H 0.066 0.934 16 C -0.180 4.180 17 C -0.100 4.100 18 C -0.080 4.080 19 C -0.146 4.146 20 C -0.187 4.187 21 C -0.185 4.185 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.262 0.738 28 H 0.357 0.643 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 0.342 -12.701 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.014 4.014 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.559 4.559 6 H 0.089 0.911 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.708 3.292 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.311 5.311 14 C -0.028 4.028 15 H 0.084 0.916 16 C -0.238 4.238 17 C -0.139 4.139 18 C -0.117 4.117 19 C -0.164 4.164 20 C -0.224 4.224 21 C -0.222 4.222 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.179 0.821 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.676 0.038 -12.747 16.628 hybrid contribution 0.508 0.062 0.962 1.090 sum -10.168 0.100 -11.785 15.566 Atomic orbital electron populations 1.21837 0.96865 1.01215 0.99592 1.21365 0.92975 0.96143 0.90873 0.94780 1.19767 0.97006 0.95919 0.92777 1.21110 0.89905 1.35121 1.09807 0.91096 1.25008 0.94663 0.95752 0.97859 1.69924 1.06573 1.45355 1.32312 0.86762 0.80396 0.80582 0.81422 1.20274 1.21595 1.19083 1.60682 1.34973 1.31461 1.03983 1.21542 0.96034 0.93397 0.91835 0.91554 1.22480 0.98956 1.00905 1.01504 1.21518 0.97157 0.99026 0.96151 1.21090 0.97083 0.98416 0.95145 1.22464 0.93542 1.02411 0.98004 1.23009 1.03889 0.98563 0.96934 1.22928 1.00926 0.95014 1.03321 0.94187 0.92758 0.93533 0.96289 0.96167 0.92792 0.82123 0.92376 0.93347 0.92315 0.92737 0.92042 0.89919 0.92849 0.88185 0.89098 0.89441 0.89307 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.40 37.16 0.35 -1.97 16 2 C 0.10 1.90 2.40 -67.71 -0.16 1.74 16 3 H 0.03 0.71 7.11 -51.93 -0.37 0.34 16 4 C -0.02 -0.40 3.64 -27.88 -0.10 -0.50 16 5 C -0.52 -14.34 8.67 -34.44 -0.30 -14.64 16 6 H 0.07 2.08 7.73 -52.48 -0.41 1.67 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 9 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 N -0.68 -12.44 5.51 -99.74 -0.55 -12.99 16 14 C 0.08 1.29 2.40 -67.72 -0.16 1.12 16 15 H 0.07 1.02 7.11 -51.93 -0.37 0.65 16 16 C -0.18 -2.86 9.15 37.16 0.34 -2.52 16 17 C -0.10 -1.35 4.85 -26.73 -0.13 -1.48 16 18 C -0.08 -1.03 5.38 -26.73 -0.14 -1.17 16 19 C -0.15 -1.67 5.74 -90.63 -0.52 -2.19 16 20 C -0.19 -1.89 10.18 -26.74 -0.27 -2.16 16 21 C -0.18 -1.94 10.25 -26.74 -0.27 -2.21 16 22 H 0.04 0.61 7.43 -51.93 -0.39 0.22 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 26 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.36 7.43 6.95 -39.30 -0.27 7.16 16 29 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.05 7.43 -51.93 -0.39 0.66 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 35 H 0.05 0.68 7.87 -51.93 -0.41 0.27 16 36 H 0.10 1.13 8.07 -51.93 -0.42 0.71 16 37 H 0.09 0.89 8.03 -51.93 -0.42 0.48 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -28.33 317.05 -8.71 -37.05 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.57 Total: 4.89 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -1.47 Total: -24.12 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.22 Total: -39.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.33 -8.71 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.799 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds