Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47394 * 2 1 4 4 C 1.53006 * 109.47054 * 120.00458 * 2 1 3 5 5 C 1.50698 * 109.47184 * 185.00283 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99809 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99912 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47123 * 90.00333 * 9 7 5 11 11 H 1.48506 * 109.46940 * 210.00455 * 9 7 5 12 12 H 1.48493 * 109.47121 * 329.99876 * 9 7 5 13 13 N 1.46904 * 109.47398 * 240.00036 * 2 1 3 14 14 C 1.46903 * 110.99893 * 84.99864 * 13 2 1 15 15 H 1.09003 * 109.47094 * 325.00670 * 14 13 2 16 16 C 1.53000 * 109.46808 * 85.00112 * 14 13 2 17 17 C 1.52992 * 109.47157 * 205.00159 * 14 13 2 18 18 C 1.53004 * 109.47132 * 65.00303 * 17 14 13 19 19 C 1.52997 * 109.47121 * 179.97438 * 18 17 14 20 20 C 1.52995 * 117.50209 * 243.62227 * 19 18 17 21 21 C 1.52994 * 60.00073 * 252.51253 * 20 19 18 22 22 H 1.09002 * 109.47069 * 59.99674 * 1 2 3 23 23 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47070 * 300.00071 * 1 2 3 25 25 H 1.09001 * 109.47002 * 304.99688 * 4 2 1 26 26 H 1.08993 * 109.46955 * 65.00125 * 4 2 1 27 27 H 0.97004 * 119.99097 * 179.97438 * 8 7 5 28 28 H 1.00894 * 111.00324 * 208.95729 * 13 2 1 29 29 H 1.08996 * 109.47429 * 60.00099 * 16 14 13 30 30 H 1.09001 * 109.47459 * 180.02562 * 16 14 13 31 31 H 1.08999 * 109.47234 * 299.99933 * 16 14 13 32 32 H 1.09003 * 109.47023 * 185.00471 * 17 14 13 33 33 H 1.08999 * 109.47622 * 304.99952 * 17 14 13 34 34 H 1.08998 * 109.46843 * 300.00102 * 18 17 14 35 35 H 1.09004 * 109.46605 * 59.99834 * 18 17 14 36 36 H 1.09003 * 115.55079 * 29.33070 * 19 18 17 37 37 H 1.09004 * 117.49857 * 359.97438 * 20 19 18 38 38 H 1.09001 * 117.50134 * 145.01898 * 20 19 18 39 39 H 1.09001 * 117.49832 * 252.50835 * 21 20 19 40 40 H 1.08994 * 117.50344 * 107.48923 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0861 0.5393 7 6 4.2304 -1.1937 2.3578 8 7 5.5412 -1.1013 2.4129 9 14 3.3014 -2.1090 3.6952 10 1 3.1699 -3.5389 3.3167 11 1 4.0452 -2.0024 4.9761 12 1 1.9508 -1.5132 3.8562 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2226 -2.3469 15 1 1.2577 0.9330 -2.2906 16 6 3.4111 0.9809 -2.3223 17 6 1.9771 -0.5796 -3.6454 18 6 0.5984 -1.2379 -3.7277 19 6 0.4927 -2.0396 -5.0265 20 6 -0.5522 -1.5916 -6.0503 21 6 -0.7729 -2.8717 -5.2420 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.6054 -0.2619 2.1370 26 1 1.7517 -1.7716 1.2055 27 1 6.0254 -1.5081 3.1484 28 1 2.9173 -1.1205 -1.0288 29 1 4.2360 0.2707 -2.3785 30 1 3.4576 1.6603 -3.1734 31 1 3.4862 1.5525 -1.3972 32 1 2.1126 0.0876 -4.4966 33 1 2.7487 -1.3493 -3.6607 34 1 0.4629 -1.9050 -2.8764 35 1 -0.1732 -0.4681 -3.7125 36 1 1.4310 -2.4425 -5.4079 37 1 -1.1648 -0.7259 -5.7984 38 1 -0.3015 -1.6995 -7.1056 39 1 -0.6674 -3.8220 -5.7656 40 1 -1.5303 -2.8481 -4.4586 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = -23.873399 kcal Electronic energy + Delta-G solvation = -15908.011498 eV Core-core repulsion = 13528.551636 eV Total energy + Delta-G solvation = -2379.459862 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31381 -38.11870 -35.55486 -34.11817 -31.25752 -29.87018 -28.87920 -25.20934 -24.51754 -23.14860 -21.36455 -21.16817 -20.97730 -18.91410 -16.84557 -16.61176 -16.36995 -15.68272 -15.31515 -15.07132 -14.62004 -14.21551 -13.98835 -13.80488 -13.61491 -13.44402 -12.93391 -12.62563 -12.55326 -12.43427 -12.33989 -12.20498 -11.89562 -11.85139 -11.70653 -11.51612 -11.23847 -11.15266 -10.88485 -10.74332 -10.60578 -9.07229 -8.26846 -6.29163 1.37237 1.38035 1.49706 2.37764 3.01837 3.07431 3.51210 3.73481 4.10258 4.17371 4.19165 4.24765 4.35728 4.44040 4.56158 4.60853 4.67132 4.76331 4.84078 4.85759 4.88071 5.00502 5.07064 5.13738 5.15183 5.19844 5.25382 5.29408 5.32501 5.35671 5.41720 5.53196 5.58619 5.65426 5.71506 6.27821 6.49674 6.68161 6.78110 7.35223 8.89204 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032293 B = 0.005844 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.855393 B = 4790.442542 C = 5018.323426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.098 3.902 3 H 0.019 0.981 4 C -0.013 4.013 5 C -0.520 4.520 6 H 0.037 0.963 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.675 5.675 14 C 0.084 3.916 15 H 0.075 0.925 16 C -0.174 4.174 17 C -0.093 4.093 18 C -0.072 4.072 19 C -0.160 4.160 20 C -0.176 4.176 21 C -0.186 4.186 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.020 0.980 26 H 0.021 0.979 27 H 0.264 0.736 28 H 0.339 0.661 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 0.134 -13.525 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.011 4.011 3 H 0.037 0.963 4 C -0.051 4.051 5 C -0.558 4.558 6 H 0.056 0.944 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.173 1.173 13 N -0.306 5.306 14 C -0.027 4.027 15 H 0.093 0.907 16 C -0.233 4.233 17 C -0.131 4.131 18 C -0.110 4.110 19 C -0.179 4.179 20 C -0.213 4.213 21 C -0.223 4.223 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.158 0.842 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.936 -0.159 -13.590 18.763 hybrid contribution 1.254 0.184 1.141 1.706 sum -11.682 0.025 -12.449 17.072 Atomic orbital electron populations 1.21734 0.93950 1.01808 1.01052 1.21304 0.95168 0.94739 0.89934 0.96291 1.19715 0.94192 0.96385 0.94784 1.21381 0.92067 1.33771 1.08573 0.94433 1.25910 0.95436 0.96968 1.00579 1.70070 1.08427 1.47109 1.33500 0.85708 0.79611 0.79415 0.78159 1.19484 1.21396 1.17329 1.60787 1.33666 1.31968 1.04221 1.21650 0.95875 0.93363 0.91764 0.90694 1.22418 0.98814 1.00795 1.01254 1.21449 0.97450 0.98816 0.95342 1.20960 0.96555 0.98183 0.95256 1.22394 0.94151 1.03367 0.97940 1.23080 1.02580 0.98372 0.97258 1.22999 1.00072 0.95751 1.03498 0.92269 0.92547 0.92587 0.96206 0.96098 0.92726 0.84152 0.93852 0.90604 0.94985 0.90850 0.93033 0.92030 0.92349 0.88261 0.88659 0.88180 0.88402 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.40 71.98 0.68 -3.33 16 2 C 0.10 3.84 2.40 44.92 0.11 3.95 16 3 H 0.02 0.80 7.11 -2.39 -0.02 0.78 16 4 C -0.01 -0.61 3.64 29.85 0.11 -0.50 16 5 C -0.52 -29.23 8.67 25.60 0.22 -29.01 16 6 H 0.04 2.31 7.73 -2.91 -0.02 2.28 16 7 C 0.01 0.46 5.47 84.65 0.46 0.92 16 8 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 9 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 13 N -0.67 -24.73 5.51 -469.46 -2.59 -27.32 16 14 C 0.08 2.53 2.40 44.91 0.11 2.64 16 15 H 0.07 2.17 7.11 -2.39 -0.02 2.15 16 16 C -0.17 -5.57 9.15 71.98 0.66 -4.92 16 17 C -0.09 -2.36 4.85 30.59 0.15 -2.21 16 18 C -0.07 -1.73 5.38 30.59 0.16 -1.57 16 19 C -0.16 -3.36 5.74 -10.80 -0.06 -3.42 16 20 C -0.18 -3.07 10.18 30.59 0.31 -2.76 16 21 C -0.19 -3.50 10.25 30.59 0.31 -3.19 16 22 H 0.06 1.63 7.43 -2.39 -0.02 1.61 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 26 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 27 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.34 14.53 6.95 -89.70 -0.62 13.90 16 29 H 0.04 1.49 8.13 -2.39 -0.02 1.47 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.03 1.17 7.43 -2.39 -0.02 1.15 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.74 7.75 -2.39 -0.02 1.73 16 35 H 0.06 1.33 7.87 -2.39 -0.02 1.32 16 36 H 0.10 2.09 8.07 -2.39 -0.02 2.07 16 37 H 0.09 1.59 8.03 -2.39 -0.02 1.57 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -61.25 317.05 3.11 -58.14 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.29 Total: 25.01 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 3.22 Total: -43.40 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.29 Total: -86.33 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -61.25 3.11 -58.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.267 kcal (2) G-P(sol) polarization free energy of solvation -61.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds