Wall clock time and date at job start Mon Mar 30 2020 02:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46958 * 2 1 4 4 C 1.52997 * 109.47302 * 239.99677 * 2 1 3 5 5 C 1.53004 * 109.46998 * 175.00051 * 4 2 1 6 6 C 1.53006 * 109.46878 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.49794 * 243.62310 * 6 5 4 8 8 C 1.52998 * 117.49665 * 174.99930 * 6 5 4 9 9 N 1.46898 * 109.46842 * 119.99694 * 2 1 3 10 10 C 1.46896 * 111.00201 * 276.54236 * 9 2 1 11 11 H 1.09001 * 109.47220 * 348.03349 * 10 9 2 12 12 C 1.53000 * 109.47481 * 108.03217 * 10 9 2 13 13 C 1.53004 * 109.47288 * 228.03515 * 10 9 2 14 14 C 1.50702 * 109.46952 * 64.99777 * 13 10 9 15 15 H 1.07998 * 120.00291 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99482 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99525 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00406 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47367 * 89.99775 * 18 16 14 20 20 H 1.48504 * 109.46981 * 209.99838 * 18 16 14 21 21 H 1.48496 * 109.46982 * 329.99617 * 18 16 14 22 22 H 1.08995 * 109.47248 * 303.74075 * 1 2 3 23 23 H 1.09003 * 109.46465 * 63.73753 * 1 2 3 24 24 H 1.08997 * 109.47081 * 183.73585 * 1 2 3 25 25 H 1.09002 * 109.47198 * 55.00159 * 4 2 1 26 26 H 1.08994 * 109.47240 * 294.99995 * 4 2 1 27 27 H 1.08994 * 109.47080 * 300.00043 * 5 4 2 28 28 H 1.08996 * 109.47172 * 60.00453 * 5 4 2 29 29 H 1.08999 * 115.54860 * 29.33102 * 6 5 4 30 30 H 1.09005 * 117.49848 * 0.02562 * 7 6 5 31 31 H 1.08997 * 117.49725 * 145.02127 * 7 6 5 32 32 H 1.09000 * 117.50150 * 214.97704 * 8 6 5 33 33 H 1.09003 * 117.50004 * 0.02562 * 8 6 5 34 34 H 1.00901 * 111.00002 * 152.58840 * 9 2 1 35 35 H 1.09004 * 109.47323 * 185.69115 * 12 10 9 36 36 H 1.09000 * 109.46727 * 305.69284 * 12 10 9 37 37 H 1.08999 * 109.47061 * 65.68754 * 12 10 9 38 38 H 1.08999 * 109.47122 * 184.99705 * 13 10 9 39 39 H 1.08998 * 109.46831 * 304.99764 * 13 10 9 40 40 H 0.97003 * 119.99583 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3341 -2.5631 7 6 4.9766 -2.5529 -2.3571 8 6 5.5705 -1.2401 -2.8719 9 7 2.0196 -0.6924 1.1995 10 6 2.0478 0.2133 2.3556 11 1 1.9028 1.2392 2.0171 12 6 0.9289 -0.1657 3.3279 13 6 3.3995 0.0959 3.0628 14 6 4.4904 0.5858 2.1457 15 1 4.2442 0.9455 1.1576 16 6 5.8026 0.5760 2.5688 17 7 6.7547 1.0031 1.7683 18 14 6.2284 -0.0454 4.2781 19 1 6.4956 -1.5050 4.2220 20 1 7.4371 0.6604 4.7745 21 1 5.0911 0.2147 5.1968 22 1 -0.3633 0.5708 0.8545 23 1 -0.3632 0.4548 -0.9216 24 1 -0.3633 -1.0254 0.0670 25 1 1.6055 -0.2618 -2.1370 26 1 1.7518 -1.7715 -1.2055 27 1 3.8533 0.4369 -1.3572 28 1 3.9995 -1.0728 -0.4258 29 1 3.3868 -1.3538 -3.4082 30 1 5.2061 -2.8415 -1.3313 31 1 4.8817 -3.3748 -3.0667 32 1 5.8664 -1.1985 -3.9201 33 1 6.1912 -0.6652 -2.1846 34 1 2.9286 -1.0991 1.0365 35 1 0.8850 0.5662 4.1345 36 1 -0.0235 -0.1801 2.7980 37 1 1.1281 -1.1533 3.7439 38 1 3.3887 0.7001 3.9699 39 1 3.5842 -0.9465 3.3227 40 1 7.6779 0.9965 2.0660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:50 Heat of formation + Delta-G solvation = -6.440861 kcal Electronic energy + Delta-G solvation = -16312.030770 eV Core-core repulsion = 13933.326839 eV Total energy + Delta-G solvation = -2378.703930 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.04167 -36.71693 -33.87873 -32.19731 -29.73315 -28.05217 -27.77616 -23.74543 -22.62289 -22.01594 -20.00372 -19.79770 -19.49244 -16.74903 -15.48015 -15.19042 -14.89901 -14.24764 -13.76945 -13.50309 -13.29393 -12.64303 -12.22876 -12.11652 -12.01723 -11.85009 -11.55043 -11.30366 -11.11894 -11.04511 -10.88173 -10.67605 -10.59418 -10.29940 -10.19860 -9.76438 -9.64305 -9.49296 -9.39198 -9.11924 -8.56417 -7.59766 -6.07374 -4.05478 3.29325 3.37330 3.41654 4.15781 4.43441 4.91291 4.96098 5.28237 5.28694 5.31932 5.41048 5.60841 5.72412 5.78881 5.90717 5.95756 5.96819 6.10338 6.14768 6.16910 6.22023 6.30943 6.40726 6.42063 6.47577 6.52525 6.56236 6.64984 6.73969 6.77740 6.89061 6.95786 7.23180 7.27542 7.76395 8.01715 8.34335 8.49055 8.96300 9.55908 11.05090 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.010979 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.165975 B = 2549.631843 C = 3949.802197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.084 3.916 3 H 0.042 0.958 4 C -0.112 4.112 5 C -0.093 4.093 6 C -0.146 4.146 7 C -0.183 4.183 8 C -0.184 4.184 9 N -0.680 5.680 10 C 0.094 3.906 11 H 0.045 0.955 12 C -0.136 4.136 13 C -0.027 4.027 14 C -0.522 4.522 15 H 0.073 0.927 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.266 1.266 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.354 0.646 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.004 -4.131 -5.599 10.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.060 0.940 4 C -0.150 4.150 5 C -0.130 4.130 6 C -0.164 4.164 7 C -0.220 4.220 8 C -0.221 4.221 9 N -0.315 5.315 10 C -0.016 4.016 11 H 0.063 0.937 12 C -0.194 4.194 13 C -0.065 4.065 14 C -0.560 4.560 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.191 1.191 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.176 0.824 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.410 -4.368 -5.451 10.933 hybrid contribution 1.249 0.295 0.651 1.439 sum -7.161 -4.073 -4.799 9.535 Atomic orbital electron populations 1.21827 0.95817 1.01597 1.00248 1.21538 0.94609 0.96265 0.90251 0.94032 1.21698 0.95489 1.00879 0.96962 1.21255 0.94957 1.00672 0.96128 1.22310 0.92755 1.01341 1.00031 1.23006 1.05105 0.91475 1.02411 1.22975 0.96601 1.01140 1.01360 1.60726 1.33706 1.33838 1.03262 1.21470 0.95315 0.93898 0.90896 0.93655 1.21870 0.98479 1.00648 0.98430 1.19989 0.92929 0.96797 0.96794 1.21114 0.90335 1.42672 1.01866 0.90915 1.24989 0.96485 0.94695 0.96938 1.69915 1.00373 1.47307 1.36194 0.86820 0.77941 0.79136 0.85640 1.20339 1.21570 1.19090 0.93129 0.93565 0.92523 0.92386 0.91668 0.91523 0.90305 0.88633 0.88568 0.89665 0.89603 0.88121 0.82381 0.93824 0.93580 0.93193 0.96241 0.96496 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.23 37.16 0.34 -1.62 16 2 C 0.08 1.40 2.56 -67.71 -0.17 1.23 16 3 H 0.04 0.78 7.43 -51.93 -0.39 0.40 16 4 C -0.11 -1.70 4.77 -26.73 -0.13 -1.83 16 5 C -0.09 -1.58 5.32 -26.73 -0.14 -1.72 16 6 C -0.15 -2.19 5.74 -90.62 -0.52 -2.71 16 7 C -0.18 -2.66 10.18 -26.73 -0.27 -2.94 16 8 C -0.18 -2.78 10.25 -26.73 -0.27 -3.06 16 9 N -0.68 -12.80 6.14 -99.74 -0.61 -13.41 16 10 C 0.09 1.89 2.52 -67.71 -0.17 1.72 16 11 H 0.05 0.96 7.19 -51.93 -0.37 0.58 16 12 C -0.14 -2.35 9.52 37.16 0.35 -2.00 16 13 C -0.03 -0.64 3.44 -27.88 -0.10 -0.74 16 14 C -0.52 -14.11 8.82 -34.44 -0.30 -14.42 16 15 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 18 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 H 0.05 0.73 7.04 -51.93 -0.37 0.37 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.08 1.55 6.16 -51.93 -0.32 1.23 16 29 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.10 1.51 8.03 -51.93 -0.42 1.09 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.35 7.29 5.22 -39.29 -0.20 7.08 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.73 6.94 -51.93 -0.36 0.37 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 39 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -27.86 314.71 -8.67 -36.53 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.43 Total: 7.45 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -1.48 Total: -26.19 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.16 Total: -39.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.86 -8.67 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.093 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds