Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46958 * 2 1 4 4 C 1.52997 * 109.47302 * 239.99677 * 2 1 3 5 5 C 1.53004 * 109.46998 * 175.00051 * 4 2 1 6 6 C 1.53006 * 109.46878 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.49794 * 243.62310 * 6 5 4 8 8 C 1.52998 * 117.49665 * 174.99930 * 6 5 4 9 9 N 1.46898 * 109.46842 * 119.99694 * 2 1 3 10 10 C 1.46896 * 111.00201 * 276.54236 * 9 2 1 11 11 H 1.09001 * 109.47220 * 348.03349 * 10 9 2 12 12 C 1.53000 * 109.47481 * 108.03217 * 10 9 2 13 13 C 1.53004 * 109.47288 * 228.03515 * 10 9 2 14 14 C 1.50702 * 109.46952 * 64.99777 * 13 10 9 15 15 H 1.07998 * 120.00291 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99482 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99525 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00406 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47367 * 89.99775 * 18 16 14 20 20 H 1.48504 * 109.46981 * 209.99838 * 18 16 14 21 21 H 1.48496 * 109.46982 * 329.99617 * 18 16 14 22 22 H 1.08995 * 109.47248 * 303.74075 * 1 2 3 23 23 H 1.09003 * 109.46465 * 63.73753 * 1 2 3 24 24 H 1.08997 * 109.47081 * 183.73585 * 1 2 3 25 25 H 1.09002 * 109.47198 * 55.00159 * 4 2 1 26 26 H 1.08994 * 109.47240 * 294.99995 * 4 2 1 27 27 H 1.08994 * 109.47080 * 300.00043 * 5 4 2 28 28 H 1.08996 * 109.47172 * 60.00453 * 5 4 2 29 29 H 1.08999 * 115.54860 * 29.33102 * 6 5 4 30 30 H 1.09005 * 117.49848 * 0.02562 * 7 6 5 31 31 H 1.08997 * 117.49725 * 145.02127 * 7 6 5 32 32 H 1.09000 * 117.50150 * 214.97704 * 8 6 5 33 33 H 1.09003 * 117.50004 * 0.02562 * 8 6 5 34 34 H 1.00901 * 111.00002 * 152.58840 * 9 2 1 35 35 H 1.09004 * 109.47323 * 185.69115 * 12 10 9 36 36 H 1.09000 * 109.46727 * 305.69284 * 12 10 9 37 37 H 1.08999 * 109.47061 * 65.68754 * 12 10 9 38 38 H 1.08999 * 109.47122 * 184.99705 * 13 10 9 39 39 H 1.08998 * 109.46831 * 304.99764 * 13 10 9 40 40 H 0.97003 * 119.99583 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3341 -2.5631 7 6 4.9766 -2.5529 -2.3571 8 6 5.5705 -1.2401 -2.8719 9 7 2.0196 -0.6924 1.1995 10 6 2.0478 0.2133 2.3556 11 1 1.9028 1.2392 2.0171 12 6 0.9289 -0.1657 3.3279 13 6 3.3995 0.0959 3.0628 14 6 4.4904 0.5858 2.1457 15 1 4.2442 0.9455 1.1576 16 6 5.8026 0.5760 2.5688 17 7 6.7547 1.0031 1.7683 18 14 6.2284 -0.0454 4.2781 19 1 6.4956 -1.5050 4.2220 20 1 7.4371 0.6604 4.7745 21 1 5.0911 0.2147 5.1968 22 1 -0.3633 0.5708 0.8545 23 1 -0.3632 0.4548 -0.9216 24 1 -0.3633 -1.0254 0.0670 25 1 1.6055 -0.2618 -2.1370 26 1 1.7518 -1.7715 -1.2055 27 1 3.8533 0.4369 -1.3572 28 1 3.9995 -1.0728 -0.4258 29 1 3.3868 -1.3538 -3.4082 30 1 5.2061 -2.8415 -1.3313 31 1 4.8817 -3.3748 -3.0667 32 1 5.8664 -1.1985 -3.9201 33 1 6.1912 -0.6652 -2.1846 34 1 2.9286 -1.0991 1.0365 35 1 0.8850 0.5662 4.1345 36 1 -0.0235 -0.1801 2.7980 37 1 1.1281 -1.1533 3.7439 38 1 3.3887 0.7001 3.9699 39 1 3.5842 -0.9465 3.3227 40 1 7.6779 0.9965 2.0660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = -22.068465 kcal Electronic energy + Delta-G solvation = -16312.708433 eV Core-core repulsion = 13933.326839 eV Total energy + Delta-G solvation = -2379.381594 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45089 -38.08951 -35.54466 -34.16844 -31.18615 -29.62020 -29.42016 -25.02932 -24.56784 -23.23362 -21.31798 -21.20131 -21.13089 -18.89723 -16.85629 -16.70583 -16.37595 -16.08412 -15.19184 -14.92843 -14.75226 -14.56210 -13.89254 -13.58960 -13.54678 -13.32014 -13.10572 -12.58429 -12.53776 -12.48744 -12.36636 -12.16771 -12.06804 -11.79784 -11.74137 -11.64944 -11.26779 -11.05390 -10.88680 -10.75925 -10.71699 -9.15701 -8.27441 -6.29799 1.33356 1.35207 1.46197 2.35191 2.91975 3.06603 3.48993 3.69539 4.02112 4.04595 4.13808 4.26814 4.33158 4.42950 4.54745 4.63261 4.70611 4.75134 4.77749 4.87427 4.94409 4.98005 5.04737 5.05017 5.11319 5.17937 5.18687 5.25737 5.28265 5.31864 5.43780 5.51134 5.53017 5.59514 5.70315 6.28315 6.45837 6.67227 6.77759 7.34265 8.87867 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.010979 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.165975 B = 2549.631843 C = 3949.802197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.079 3.921 3 H 0.012 0.988 4 C -0.101 4.101 5 C -0.086 4.086 6 C -0.145 4.145 7 C -0.175 4.175 8 C -0.193 4.193 9 N -0.675 5.675 10 C 0.096 3.904 11 H 0.028 0.972 12 C -0.127 4.127 13 C -0.024 4.024 14 C -0.518 4.518 15 H 0.038 0.962 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.251 1.251 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.340 0.660 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 -5.523 -5.599 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.031 4.031 3 H 0.030 0.970 4 C -0.139 4.139 5 C -0.124 4.124 6 C -0.163 4.163 7 C -0.212 4.212 8 C -0.230 4.230 9 N -0.308 5.308 10 C -0.014 4.014 11 H 0.047 0.953 12 C -0.185 4.185 13 C -0.062 4.062 14 C -0.556 4.556 15 H 0.056 0.944 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.175 1.175 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.144 0.856 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.160 0.840 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.363 -5.756 -5.443 13.044 hybrid contribution 1.862 0.787 0.584 2.104 sum -8.500 -4.969 -4.860 10.980 Atomic orbital electron populations 1.21747 0.93125 1.02330 1.01366 1.21673 0.96603 0.94610 0.90235 0.97018 1.21637 0.93553 1.01559 0.97128 1.21101 0.96737 0.98498 0.96049 1.22349 0.92993 1.01282 0.99672 1.23049 1.04077 0.91979 1.02096 1.22967 0.96465 1.01477 1.02105 1.60907 1.32587 1.33446 1.03864 1.21430 0.94658 0.93506 0.91793 0.95340 1.21772 0.97769 1.01000 0.97946 1.19952 0.93660 0.96385 0.96164 1.21317 0.91562 1.41632 1.01057 0.94383 1.25846 0.96465 0.95171 1.01036 1.70065 1.00782 1.49241 1.38361 0.85798 0.78028 0.78758 0.80884 1.19515 1.21423 1.17455 0.93413 0.91352 0.91647 0.89885 0.90455 0.94859 0.93854 0.85641 0.90594 0.86494 0.86862 0.91716 0.83985 0.92772 0.91817 0.92866 0.96258 0.96253 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.23 71.98 0.66 -2.70 16 2 C 0.08 2.62 2.56 44.92 0.11 2.73 16 3 H 0.01 0.46 7.43 -2.39 -0.02 0.44 16 4 C -0.10 -2.97 4.77 30.59 0.15 -2.82 16 5 C -0.09 -3.06 5.32 30.60 0.16 -2.90 16 6 C -0.15 -4.24 5.74 -10.79 -0.06 -4.30 16 7 C -0.18 -4.96 10.18 30.60 0.31 -4.65 16 8 C -0.19 -5.90 10.25 30.59 0.31 -5.58 16 9 N -0.67 -25.40 6.14 -469.47 -2.88 -28.28 16 10 C 0.10 3.85 2.52 44.92 0.11 3.96 16 11 H 0.03 1.23 7.19 -2.39 -0.02 1.21 16 12 C -0.13 -4.10 9.52 71.98 0.69 -3.42 16 13 C -0.02 -1.12 3.44 29.85 0.10 -1.01 16 14 C -0.52 -29.05 8.82 25.60 0.23 -28.82 16 15 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 16 C 0.01 0.70 5.47 84.65 0.46 1.16 16 17 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 18 Si 0.94 44.71 27.47 68.60 1.88 46.59 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 22 H 0.05 1.27 7.04 -2.39 -0.02 1.26 16 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.83 6.16 -2.39 -0.01 1.81 16 29 H 0.13 2.97 8.07 -2.39 -0.02 2.95 16 30 H 0.08 2.45 8.03 -2.38 -0.02 2.43 16 31 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.34 14.44 5.22 -89.69 -0.47 13.97 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.84 6.94 -2.39 -0.02 1.82 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 39 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 40 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -62.21 314.71 2.99 -59.22 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.45 Total: 29.07 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 3.24 Total: -48.35 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.58 Total: -86.53 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -62.21 2.99 -59.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.148 kcal (2) G-P(sol) polarization free energy of solvation -62.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds