Wall clock time and date at job start Mon Mar 30 2020 02:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46944 * 2 1 4 4 C 1.52997 * 109.47104 * 240.00341 * 2 1 3 5 5 C 1.50701 * 109.47140 * 174.99950 * 4 2 1 6 6 H 1.08004 * 119.99836 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99959 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00061 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99844 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47135 * 90.00019 * 9 7 5 11 11 H 1.48494 * 109.46964 * 209.99956 * 9 7 5 12 12 H 1.48500 * 109.47057 * 329.99812 * 9 7 5 13 13 N 1.46896 * 109.47242 * 120.00102 * 2 1 3 14 14 C 1.46910 * 111.00052 * 276.87403 * 13 2 1 15 15 H 1.08998 * 109.46919 * 342.77028 * 14 13 2 16 16 C 1.52999 * 109.46623 * 102.76991 * 14 13 2 17 17 C 1.52999 * 109.47112 * 222.76815 * 14 13 2 18 18 H 1.09000 * 115.54960 * 279.96475 * 17 14 13 19 19 C 1.52996 * 117.49780 * 65.63847 * 17 14 13 20 20 C 1.53003 * 117.49487 * 134.26275 * 17 14 13 21 21 C 1.52997 * 117.50035 * 359.97438 * 20 17 14 22 22 C 1.52995 * 117.49814 * 145.02425 * 20 17 14 23 23 H 1.09001 * 109.47334 * 183.35392 * 1 2 3 24 24 H 1.09004 * 109.47054 * 303.35556 * 1 2 3 25 25 H 1.08999 * 109.47579 * 63.35569 * 1 2 3 26 26 H 1.08996 * 109.47206 * 294.99640 * 4 2 1 27 27 H 1.08994 * 109.47565 * 54.99962 * 4 2 1 28 28 H 0.97000 * 120.00274 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00380 * 40.83150 * 13 2 1 30 30 H 1.09000 * 109.47765 * 63.54631 * 16 14 13 31 31 H 1.09000 * 109.47307 * 183.54168 * 16 14 13 32 32 H 1.08996 * 109.47394 * 303.54067 * 16 14 13 33 33 H 1.09000 * 117.50035 * 214.97632 * 19 17 14 34 34 H 1.09000 * 117.50027 * 359.97438 * 19 17 14 35 35 H 1.08998 * 109.47049 * 63.18584 * 21 20 17 36 36 H 1.09003 * 109.47116 * 183.19285 * 21 20 17 37 37 H 1.09002 * 109.46864 * 303.19056 * 21 20 17 38 38 H 1.08996 * 109.47416 * 59.99277 * 22 20 17 39 39 H 1.08994 * 109.47193 * 179.97438 * 22 20 17 40 40 H 1.09004 * 109.46956 * 299.99491 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1934 -2.3578 8 7 3.5765 -1.8384 -3.2990 9 14 6.0921 -1.0609 -2.4369 10 1 6.7010 -2.2129 -1.7245 11 1 6.5291 -1.0694 -3.8560 12 1 6.5260 0.2049 -1.7929 13 7 2.0197 -0.6925 1.1994 14 6 2.0404 0.2112 2.3575 15 1 1.9853 1.2440 2.0134 16 6 0.8429 -0.0901 3.2608 17 6 3.3368 0.0037 3.1431 18 1 3.3493 -0.8580 3.8105 19 6 4.6490 0.3823 2.4534 20 6 4.1015 1.2525 3.5865 21 6 3.5116 2.6131 3.2100 22 6 4.8256 1.1964 4.9332 23 1 -0.3634 -1.0259 0.0601 24 1 -0.3633 0.5651 0.8584 25 1 -0.3634 0.4608 -0.9185 26 1 1.7517 -1.7714 -1.2057 27 1 1.6054 -0.2617 -2.1370 28 1 4.0608 -2.2452 -4.0344 29 1 1.4683 -1.5152 1.3925 30 1 0.9308 -1.1024 3.6553 31 1 0.8227 0.6210 4.0867 32 1 -0.0781 -0.0035 2.6843 33 1 5.5250 -0.2301 2.6673 34 1 4.5887 0.7787 1.4398 35 1 2.5431 2.7358 3.6946 36 1 4.1853 3.4046 3.5383 37 1 3.3863 2.6679 2.1286 38 1 5.5659 0.3967 4.9146 39 1 5.3238 2.1481 5.1177 40 1 4.1030 1.0044 5.7264 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695857915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:52 Heat of formation + Delta-G solvation = 0.384786 kcal Electronic energy + Delta-G solvation = -16399.646679 eV Core-core repulsion = 14021.238731 eV Total energy + Delta-G solvation = -2378.407948 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.86524 -36.32931 -33.01029 -31.50673 -28.72338 -27.69301 -27.41674 -27.15530 -23.01374 -22.83798 -20.21883 -19.66311 -18.25317 -16.12411 -15.17688 -14.87261 -14.40397 -14.20041 -13.79982 -13.49600 -13.08563 -12.70306 -12.55266 -12.23614 -12.01656 -11.95394 -11.81240 -11.58434 -11.33529 -11.22357 -10.97998 -10.93521 -10.63991 -10.49682 -10.17418 -9.98770 -9.43520 -9.30846 -9.00746 -8.84718 -8.19470 -7.44250 -5.81882 -3.78582 3.43198 3.48835 3.52361 4.04736 4.61677 4.81569 4.98905 5.14507 5.26658 5.39431 5.51659 5.52768 5.56564 5.72383 5.76802 5.79723 5.87876 5.90698 5.98664 6.03781 6.11883 6.13685 6.15456 6.28518 6.31465 6.35049 6.46023 6.52394 6.63330 6.69912 6.82699 7.10698 7.66725 7.78571 8.13040 8.15747 8.29155 8.67894 9.27090 9.82224 11.30504 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021764 B = 0.009086 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.233093 B = 3081.049794 C = 4044.098250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.092 3.908 3 H 0.061 0.939 4 C 0.032 3.968 5 C -0.482 4.482 6 H 0.060 0.940 7 C 0.048 3.952 8 N -0.906 5.906 9 Si 0.887 3.113 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.656 5.656 14 C 0.109 3.891 15 H 0.071 0.929 16 C -0.173 4.173 17 C -0.121 4.121 18 H 0.092 0.908 19 C -0.145 4.145 20 C -0.146 4.146 21 C -0.112 4.112 22 C -0.110 4.110 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.256 0.744 29 H 0.331 0.669 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 5.804 14.053 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.018 4.018 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.521 4.521 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.285 5.285 14 C -0.002 4.002 15 H 0.089 0.911 16 C -0.232 4.232 17 C -0.140 4.140 18 H 0.110 0.890 19 C -0.182 4.182 20 C -0.147 4.147 21 C -0.169 4.169 22 C -0.167 4.167 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.149 0.851 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.048 5.813 13.724 15.045 hybrid contribution 0.075 -0.095 0.065 0.137 sum -1.973 5.719 13.789 15.058 Atomic orbital electron populations 1.22672 0.99865 1.00920 1.00652 1.21868 0.89644 0.97835 0.92437 0.92037 1.19117 0.96285 0.95350 0.89764 1.21169 0.91854 1.32497 1.06577 0.92169 1.24999 0.97802 0.96088 0.96138 1.69963 1.35059 1.37231 1.12477 0.86671 0.86757 0.78311 0.76667 1.20963 1.21744 1.20054 1.60452 1.58734 1.07462 1.01891 1.21170 0.91418 0.97132 0.90440 0.91098 1.22496 0.98821 1.01588 1.00309 1.22321 0.93443 0.96786 1.01404 0.88961 1.23064 0.96602 1.01501 0.97009 1.21633 1.04227 0.92574 0.96241 1.21310 0.99808 0.94363 1.01423 1.21291 0.99160 1.01417 0.94816 0.93189 0.94263 0.92703 0.96618 0.96664 0.93454 0.85052 0.92651 0.92865 0.92735 0.89770 0.87963 0.92838 0.92786 0.92141 0.92749 0.92680 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.87 37.16 0.33 -2.75 16 2 C 0.09 1.84 2.47 -67.72 -0.17 1.68 16 3 H 0.06 1.28 7.41 -51.93 -0.38 0.89 16 4 C 0.03 0.82 4.65 -27.88 -0.13 0.70 16 5 C -0.48 -13.60 8.84 -34.44 -0.30 -13.90 16 6 H 0.06 1.68 7.06 -52.48 -0.37 1.31 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.79 13.29 55.43 0.74 -27.05 16 9 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.66 -12.15 5.78 -99.74 -0.58 -12.73 16 14 C 0.11 1.67 2.49 -67.71 -0.17 1.50 16 15 H 0.07 1.14 5.09 -51.93 -0.26 0.87 16 16 C -0.17 -2.23 9.02 37.16 0.34 -1.89 16 17 C -0.12 -1.82 5.03 -90.62 -0.46 -2.28 16 18 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 19 C -0.14 -2.39 9.50 -26.73 -0.25 -2.64 16 20 C -0.15 -1.99 2.70 -154.51 -0.42 -2.41 16 21 C -0.11 -1.42 8.42 37.16 0.31 -1.11 16 22 C -0.11 -1.25 9.85 37.15 0.37 -0.89 16 23 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 24 H 0.04 0.58 6.44 -51.93 -0.33 0.24 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.33 5.88 7.96 -39.29 -0.31 5.56 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.69 6.23 -51.93 -0.32 0.37 16 33 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 34 H 0.10 1.97 7.39 -51.93 -0.38 1.58 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.61 7.98 -51.93 -0.41 0.20 16 37 H 0.06 0.85 7.18 -51.93 -0.37 0.47 16 38 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 39 H 0.05 0.57 7.96 -51.93 -0.41 0.16 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 315.40 15.07 4.75 4.75 Total: -1.00 -29.68 315.40 -8.10 -37.77 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.34 Total: 2.55 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -0.65 Total: -22.67 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.16 Total: -39.78 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.68 -8.10 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.157 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds